RNA id: XM_021569696.2


Basic Information

Item Value
RNA id XM_021569696.2
length 6471
RNA type mRNA
GC content 0.53
exon number 21
gene id LOC110494547
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74151265 ~ 74184733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATTGCTCTTTTGCAAGCTGGCTTCTTGCGCTTTGGGAGTGTTTCCCATTTAAACAAACACAGTGGTGAAGATGGCGGAGAGTTAATAGGGACAAGAAAGAAACTGGTGTAGCCTACTCAATGAATGTGTTGAAGCGGGTGCTGATATGTGCTGAGGATGAGTGGCGTGGCAGACAACTCCATGGCGCCCATGTGCTCCGAACGGAAACGCAAGATCTCCACCTGTGATACACCAGGCCTTGGGTGTGACAAGCGCAGAAGGGAGCAGGAGAGTAAATACATCGAGGAGCTGGCCGAGCTGATCTCTGCCAACCTCAGCAACATGGTCAGCTTCAACGTGAAGCCAGACAAATGTGCCATCCTCAAGGAAACCGTCCGGCAGATTAGGCAAATCAAAGAGCAAGGGAAGAGTTCATGCAGCGATGACGACGTCCAGAAGGCAGATGTGTCTTCCACTGGTCAAGGGGTCATTGACAAAGACCATCTGGGACCGCTGCTACTACAGgCCCTGGATGGGTTTCTGTTTGTGGTGAACCAGGAGGGCAGTGTCGTGTTTGTGTCTGACAACGTGACCCAGTACCTACAGTACAAACAGGAGGAGCTCATCAATACCTCTGTCTACAACATCCTCCATGAGGATGACCGGGAGCAGCTGCACAAGAACCTGCCCAAGAACAACACACCCAATGGTGGGTCATGGGGAGGAGAGGCACTGCGGCAGAAGAGCCACACCTTTAACTGCCGTATGCTGGTGAAATACGGTCACGGACAGAACCATCAGAACCATGGGCAGTCTGAGGGTCCCAACAGGCAGCGCTACGAGACCATGCAGTGCTTcgccctgacccagccccgtgcCATGATGGAGGAAGAAGACCTGCAGTCGTGTATGATCTGCGTGGCCCGTCGCGTCAATGCAGTGGAGAGGACTGAGAGGTTCAGCACCCGCCATGAGCTCTCAGGTAAACTGATAGAGATCGAACAGCAGAGTTCTCTCCACACTACCATGCATCCAGGCTGGGAGGACCTGGTGAGGCGCTGCATGCAAATGTTCCTCCATCGCAGCGAGGGCCAGCCCTGGTCCTACAAACGTCACTACCAGGAGGCCTTTCTGCATGGCCGTGCCGAGACGCCATCTTACCGGTTCTCTCTCTCCGACGGCACCCCGGTCACTGCTCAAACCAGGAGCGAACTGTGTCGTAACCACACCTCCAATGAGCCACCCACCTTCCTTTCTACCCACCTGCTGCAGAGGGAGCAGAATGGCTTCCAAACCAACCAGGGGGGTGTGATGAGGCACCAGGGCATGGGCCTCCCCAACACCCAGATGAACATGGCTCCTGGAGGGGGCATGGGTGGCATGAATAGGGGCTTCGGCACGGGGGCAGAGCAGGGGCACATGGGTCAGAGAGGCGGGCCCCCGTATGCAGCTGGCAACAGGATGAACTGTATTAATCAGATTAACCCTTCGATGCATCAAATGAACTCTCAAAGGAATTCAATGAACAATATGAGTCCGATGAATTCCGTTAATCCAACAAACTCCATGCATCCAATGAACTCTCAGATGAATTCCATGAACCAGATTAATTCTATGAGTCAGATGAACCAGATAAATCGGATGAACCAGAGGAGTCAGATGAGCCTCCCTGGAATGCATCAGCAGCATCCTCAGCAGCAGCAGACACCGTTCCATGGAGCGGGGTACAGCATGGGTGCCATGACTAGCCCCCCCCAGGGCAGTCCAGGTATGAATATCCCCCAGCAGAACATCATGGGCTCCCCTAGAGTAAGGGGGAGCCCCAAAATGTGTGCTAGCCCCTTCTCCCCAGGAGGTATGCACTCTCCCATGAGCTCGGGTCACCCAGGGGGGTCTGGAGTTAGCACTGGCTTCTCCAGCAGCTCCCTAAATGCCCTCCAGGCCATCAGTGAGGGGGTGGGCACCtctctacctgcactcacctctcccccCGCACACAAGCCTGACAGCTCCCCAAGCGTCAACTCCACCCAGCAGGGACAAAGCCAGTGGCAGGGCGCGGTCTGTAAACCAGGCAGTTCAGACTCCAAGAGCCCGAGTAGCTCACTGGCCAGTGGAggggagcagcagcagcaacacacCCCCACCACAGAGGGGACCTCAGACAAGCCAGACAGCCAGGCCAACAGGGAGGGCCCAGCCTGGGGAGAAGCCAACCGACGGGTCCCTGACAACAAGGGGGGCCATAAGAAGCTCCTGCAGCTCCTCACCTCCCCTACAGAGGAGCTGGTGCCCCATAACCCCCAGGCTGGCCCTGGCACCACCCCCATGGGCTCTGAGGCCAAGGATGACATGCAGGGTATGCCCAGCCCCTCCACGGGTGTGTCGTCCTCCACTGCTGCAGTGGGACAGCAAGGCCTGGGAACAGGGGCTGCAGCAGCACACTTTGCCAACCAGTCCCTGCAGGAGAAGCACAAGATACTCCACAAGCTGCTGCAGAATGGCAACACCCCAGATGAGGTGGCCCGTATCACAGCTGAGGCCACGGGAAAGATCGCTGATGGTGGTCCAGAGGCTGGGCCAGGAGGTCCAGGATTGGGGCCAGGAGCGAGGGGGGCTGAGATGAAGCAAGAGCAGCACAGCCCCAAGAAGGAGAAGACCCACGCCCTCCTCCACTACCTCCTCAACAAGGATGACTCTGAAGGGGCAAGGAGAGATGTCAAGCCAAAGCTGGATGACCTAGAGGGGAGGGGAGCCTCAGGGGTCACAACCTCTGAACCCAACCCCATGGTGGGGAAGGTCAAGACTGAACCACCTGATGAGTTGGAAACCCTGGAGACAATTCTTGGAGGCTGCAGGAACGCCAGCTCTGGGTTTTATCCCGAGCCCGACTCCAGAGCAGGAAAAGGGGGAAACCAGCGGGGAAGTGGCCCAGACAGTTTGCATGATGGGGGGAGAGGAGCCATGATGTCTGCCCAGCGTGGTCCCCTCCAAAGGGCTCTGTCATTGGACGCTAGGCCCCTGGATGGTGGTGGAGGCCTGGCAGGGAGGAGGAACGTCCCCTGCCCCACCCTCATCAAATTGGAGAACATGGAGGCCCCTATCCAGCCAGGCATAACCAACGGTTTTCCAGGACCTGGAGGCATGGGTATGAACAGGGCTATGGGGATGCCACAGCGGCCCTCCATggcagggcaaggtgactgggggATGCCAAGGTCcagtggcagtcctgtgggtgcaCCAGGACACCCCTCAATGGGACGGCCAGGGATGGACTTCAACTCCAAGGGCATAATGAGAGGCCCCTTGGTCAACCGATCCAATAGTTTACCTGGCAACACCAGGTCTATGCTGAAGCAGCAACTCATGGAAATGGCTTCCAATGAGGTGAATATGGGGATGAGTCCCTTCAGTGGGCAGGGTCCTCCACCTCACTCCCCCCCCTGGCCTGACAGTGCCATGGGAATGGACAGACCACCCACTAACACAAATAGGCGTCAGTTTGGGAACCCCCTTGATGAGCTCCTGGTTCCGCCCTCCACCAGCCAGGGGCAGAGTGATGAGCTGGCGCTGCTGGACCAGCTGGactctctgctcaacaacactgatgtTATCGCCCTGGAGGAAATCGACCGGGCCCTGGGCATCCCCGACCTCGTAggacagACTCATGGTCCAGAGCAGCAGCCACAGCCAGGTCCGGGGCGGAGGCCCCCATCAGAGCCCTTCACTGGCCCAGGACCAGACACCTCCATGGGGATGGAGCAGAAGCCCATGTATGGCCAGGGGTACCCAGGACCCCCCTCTATGGGCATGCAGTCAGCCTATGGGGGTAACCCCATGCAGGGCCAGTCCCCTGCTGGTTTCAACCACATGATGAACCAGATGGGGGGCCAGCAAGGCTCGGGGGGCTTCCCTGGCATGGGGGAGATGGGCCACCCCCGCGCCAACATGAGACCCCGCATGATGAGTGCCATCAAGCCCCTTAGACAGCAGCTGGTGCAGAGGTTACAGGGCCAGCAGTTCATGAATCAGACCCGTCAAGGTATGGGCATCAAGATGGAGAATACCCCTACAGGAAACCCTGCGTTGCGGCCTGGGATGCAGCCCAGTATGGGGAGTCAGCCTGGATTCCTGAATGCTCAGATGATGGCTCAGCGCAGCAGAGAGATGATGACACTACAGATGAGGAGACAGAGGATGATGATGCTAATGCAGCAGCAACAGGCTGCAGCAGGAGGCTTCAGCCCCCCACCTAACATCACGGCCCCTGCAGGCATGGACAACCCAATGGCAGGACCCCCCATGAACCAGCCAGGACAGCAGCAGTTCAACTACGGCGGGAACTATGGAATGAGCCAGCAGGGGGACCACTCGTTTGTAGGTGCAGGCAGCAGCCCGCCCAGCAACATGATGCCAGGTTGTGTGGGAGGGCCTCAGAATCCCATGATGCAACACCACCCCCACAGCGGCCCCATGTACCAGTCAGCAGACATGAAAGGCTGGCCACAGGGTGGAGTTCCACGGAACAACTCATACCCCCAGCATCATCAGTTCACCCAGCAGGGGAACCCAGGCCAGTTTGGGGGGCCCATGATGATGAATGGCTCCATGGGCGGGCCAGGCCCGGTCAGTGGTGCTGGTGGAGCACAGATGGGCATGAACTCCATGGGAATGGGCCGGATGCCAATGGGACCTGAACAGAAATATTGCTGAAAACGTATGTAATCTATAAGAGCCCTCACCAGGAGGTCAGCAAAGACTGCAGTGCCCCACCTATGTGTCTGCAGTGTGGGTGGGAGAAGGGATGGCTAGGGGTCACCGGACACAGCCCCAAGATCTTCTCCCTCCACTGTTCTCCGGTTTGCGCGTGGAGGACACTCATAATAAGCCACAGTGAAAACAAACCAACTACACAGTGAGAGACTCTGGAATAAAGATACACCTCATACCTAATGCAGCCTCCCGTTGTAGGCTTGCCCCTCTCTGGGTGGCGTGTTTATGACTTAATTCAAGAAGAGGCCCTGCTTGTTCTTCCTGTGGGAGTGTCTGCTACACCAGAGGAGGCCGCATAGTATGTGTGCTGGGAAACAGAATCTATTTGATACAGGATGGGATACGGTACAACTAGCTATGGCTGCACTTTACCAGAGGGCTTCTATGTAAAAGGATTGTTGCAATATTTCTTAGTCATTACAGCCTTACTAGATTCAATGCATTCACAGCATTGGTTTCTTTTTCTTTTATCTTTTGGATATGcccctaaaaaaaataaaaaataaaaaaattggggAGCTGTTAGCGCAGGTTATTTCTATATTATGCAGATTCAAGCAATACAACTTTCTTCAGATGGAAACTGAGTGTCAAACTCATAAGCAAACGGTACTGCAGTATTAATGTCACAATTTATTCTATGTGAATATGAAATGTAAATATGCTACAAAAGTATCCTACATGCTTTTTATAGATCACTTTTTTTTGCACAGAGTGTGAGACTTGGTCAAATTCTAACTTGTGTATTTGTCTACAAGGTCAATACCATTTTAGTTTGCAGTTTATTTTAACGTTTTGGACTGATGAGTGAGGGTTTCCCACTTTCAACTTTGTCATTATCCTCTGAACATGTTTCTTCTAAGTGATAACAGCCATGTTTCTTTTTAGAAACACTTTTATTTGGATATGGTGCATTGACAGTTTGGAGCTTTGAAATTGCAGTGAATGAAGAAAGGAAAGTCTCAAATGAGCAGAGCTTCCTGTCAAGCTGCTGTGTTGGCGTGTGTATGAGCATTATAGAAAAGAGGTGGGGTGGCGTTATTGACTAGGGACTGTTTATAAAGTAGTTATTCCTTTCTTTCCTAgctctcagtagtgttttatgtcCTTTGACTGTTACTCTTGACTCCAAGAAATGTACCTTTAAATCTTGCGCAATCCAAAGATATTTTTCCAGTTCTTTGTATGGTTTTTGACAGTGTACATTTTTATCTATGCTTGGTATATGCAGACAGTAACTAGGTACATATCGTCATATGATATTGTACTGATAGCATAGGGGACTGAGTACTGTTGTTCAGAAGCCAGTGGGTAGCTAACAGTAGCAGTAATATGTGGATGGGTGATTCAGTGACAGGCGAAGCCCTTTGCAGTGGCATGCAACAGAATGAAATCCAcctcttactttttttttttttttcttcctgaaAATAACATTCTGTTTTGTCCAGTTGAATTACTTAATTGCATTTCTACATAAGTAATTTCCTTAAGTCAAACAAAGGATTCACCTGGTTATGTTAATTTTTGTAGTTTTCGTTTGTTTTACAGGATGTATATTCTGACGGGTTTTTTTCTCGATGTTGATAGGGCCATGCTATCCTCGATCCTTGGGACATCTCTAATGTTTATGGTTAGTGACATCCCAAAGGAACCTGGCTAGCATTAACTGATGTTGATATTGATGTAAATACAAATTTCTATTTAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1700118 lncRNA upstream 5598 74145452 ~ 74145667 (+) True G1486928
TU1700052 lncRNA upstream 69815 74034319 ~ 74081450 (+) True G1486869
TU1699990 lncRNA upstream 164117 73986355 ~ 73987148 (+) True G1486822
TU1699986 lncRNA upstream 169323 73981654 ~ 73981942 (+) True G1486818
TU1699983 lncRNA upstream 169647 73981303 ~ 73981618 (+) True G1486815
TU1700128 lncRNA downstream 804 74185537 ~ 74185740 (+) True G1486938
TU1700320 lncRNA downstream 49227 74233960 ~ 74234247 (+) True G1487100
TU1700371 lncRNA downstream 97334 74282067 ~ 74282292 (+) True G1487149
TU1700375 lncRNA downstream 128550 74313283 ~ 74313436 (+) True LOC110493251
TU1700488 lncRNA downstream 227402 74412135 ~ 74412430 (+) True G1487264
XM_036950607.1 mRNA upstream 66685 74070061 ~ 74084580 (+) False LOC110494543
XM_036950608.1 mRNA upstream 66685 74070061 ~ 74084580 (+) False LOC110494543
XM_036950609.1 mRNA upstream 66685 74070063 ~ 74084580 (+) False LOC110494543
XM_036950606.1 mRNA upstream 66685 74070066 ~ 74084580 (+) True LOC110494543
XM_036950605.1 mRNA upstream 84450 74056175 ~ 74066815 (+) True LOC110494542
XR_005037069.1 mRNA downstream 5262 74189995 ~ 74192932 (+) True LOC118940492
XM_036950620.1 mRNA downstream 128458 74313191 ~ 74387161 (+) False LOC110493251
XM_036950617.1 mRNA downstream 128460 74313193 ~ 74387161 (+) False LOC110493251
XM_036950618.1 mRNA downstream 128460 74313193 ~ 74387161 (+) False LOC110493251
XM_036950619.1 mRNA downstream 148628 74333361 ~ 74387161 (+) False LOC110493251
TU1699979 other upstream 171830 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 869246 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1025909 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1105677 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 1696341 72454563 ~ 72454924 (+) True G1484897
TU1700469 other downstream 203803 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 2498866 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 3823557 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3833635 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 4004279 78189012 ~ 78190290 (+) False G1491963

Expression Profile