RNA id: XR_005037069.1


Basic Information

Item Value
RNA id XR_005037069.1
length 2482
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC118940492
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74189995 ~ 74192932 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGCGAGGGCCAATAGCACCGCCGTTTTAGCGCTAGAAGGACGGTTCACAAATGCGTTCTTGGCCAATGGGAGCGCGCGCTGGTTATAATGATTTACATTCTGTTTGAGGGATGCCGTTACAAATCGAAACAAATTTCTGTATTTTTACGGGTGAGATGTGGGAATCCAGCTGTCCATGGTTTAGGGACTCTGCAGGTGTAGAGTTCCTGGGGACACTCAAGGATTGTCCAAACAAGCCGAGGCAGACTGGCAGGCGCCAGCGCCGTGACGTCACCCATTCATCCGAGCATTGACGCCTGTCAGCCTGGCGCCGAGCGGGCGGTCGCTATGGAGACCTCAAACAACAGGCTCTCATTCCCCCATTCACCTGCATAGCGCGCAAACCCTGAGAACAAACTGGCTGCGGTGATCATCATTCATTTATCACCTTAAGTCACTCTGATGATATTACCGCCCCACGCACCTGCAAAGACTATTTAGGGAAAGAAAGCTAAAGATGGAGAGCTGTAAAGTGAAAGCATGCATTTGTACCGCATTTTTACCAAATTGATAGGATAAGTTGTGGCAGCATTCCTTCACATGGAAATATGTCTATATGCAGGAGTCTGTCTCTGTGGATGTCTCATCACATGAACACACTAGCAACCAGCAAAATGTGTTATATGAAATATGCAGCTTTTCTCAAAGCTAGAATGTCCAAGAAAAAGTGATGTATACATTAACCAAGCTATTGATTGCAAACAGTGTTTTATAGTGCAATTATATGTCATGCAACATTTTAAGACCATATGCGAAAATAACTataaaggttttttttttttttttttgtaaatgttcCCCTAGTTTTTCTAGGTTAATTTGCTTATGTATATAATTGCAATTGtttttaaatattacatttataaaCTAAACCCATTGTTATAAGGATCCAAATAAATTACCCATATGAGTAAGCAACCAGCCTCACAAGCAAAAAGGATGACTTAACTTTGTTTTTACCAGAAATAATAGTTAACAaggaaccttttttttttttacttgctgCAGTAGCCCCTaaaactaaaaaaaaatatatatatattgccctCTGTCCCAGGTCGCAGATGACAtggcagagggagaagggggggcaGCAAGAACAATGGGAGTGCGGTGCAGGGATTGTGGGAGAGAATCTAGACTGGAGCCACAGTGTCTGGAGCGCCCCTCCAATCCCCTCATCCAGCTTTTGTTCAGCTGCAAAAGCTATCAGCACTTCCTACTGACACCAACAATAACTCCACACAGCTGGGCCCTTTTCAGCCTGTTTGCAGCACATCAAGGcaatggaagagagagggaagaggcagaggagggaaaAGAAAAGTGAAACATATTAACTCCTGATTTTAACTGACAGAATAGCAATGCCTCCCACCATCACCCACCCATCCAAAATTCCCTCTTCCATGGCCAGTTATTCATTGTAGTTAATGCTGGAATGCAAACTGACATGTAATTGCACCAATGAATTATAATGATTTGTGGTAAAAATTTGATCCCACATTGTATTTCATCTTTGTACATTGTATTCTGTATGTATCAATGTCAACACATGCAATCAGATTACTTGATGATGGCAGCTGATGACGGAGACACTAGCATCCTTTAAACTTCTTTCTGGACAAGACAGCAGCCTTTGACACAGTGAATCATGAGATTCTCATCAGCAGACTTAAGAACTTTTTGGGATTCTCTGGCACAGCACTCCAGTGGTTTTGCTCCTATCTGACTGATAGACAAGAATTTGTGACACTTGGAAATTATGAACCCAACCCTGCCACAGTCACTCAAGGGGTCCCACAGTGCTCTGCTCTGGGGCCACTCCTGTTAACTATATACATGCTGCCACTTGATATACTAATCCAAAGATTTGGAGTAAACTTTCATTTTTATGCTGTTGACCCAGAAATATATTTGAGAACAAAAGGGGACACTGAGACTGTAACAACCAAACTGACAGAACTGTCTAGATGCAACCAAGAGATGCATGCAGTTGAACTTCCTAAAACTTAATTGCAGCAAAAGAGAGCTTGTGCCCTTTGGCTCTAAGAGTGCACAGAGTAAGATGAGCACTTTCTACATTTTAACCACCTGTATAACATTGCTTGAATCAGGTTATTCTTGTCCACTGCAGATGCTGAGAAGCTTGTCCATGCCCTGGTGACATCTCAGCTTGACTATTGTAGTGCACAGCTGACAGAAATCGCAGTAAGGCTTCTGTCTCGACTCCAGATAATCCAGAACGAAGCTGCCAGGATGCTCTCACAAACTACACAAAAAACTCACAGCACCCCTGTTTTATTCAACCTCCATTGGCTTCCTGTTCAATACAGGATCACATTTTAAATTCTGCTGCTGACCTTGTTTTTTCTACTTTTTGATGTATTGTTGCTGaattttgtttgtgtttttacaaataaattattattactaTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1700128 lncRNA upstream 4255 74185537 ~ 74185740 (+) True G1486938
TU1700118 lncRNA upstream 44328 74145452 ~ 74145667 (+) True G1486928
TU1700052 lncRNA upstream 108545 74034319 ~ 74081450 (+) True G1486869
TU1699990 lncRNA upstream 202847 73986355 ~ 73987148 (+) True G1486822
TU1699986 lncRNA upstream 208053 73981654 ~ 73981942 (+) True G1486818
TU1700320 lncRNA downstream 41028 74233960 ~ 74234247 (+) True G1487100
TU1700371 lncRNA downstream 89135 74282067 ~ 74282292 (+) True G1487149
TU1700375 lncRNA downstream 120351 74313283 ~ 74313436 (+) True LOC110493251
TU1700488 lncRNA downstream 219203 74412135 ~ 74412430 (+) True G1487264
TU1700491 lncRNA downstream 222893 74415825 ~ 74416409 (+) True G1487267
XM_021569692.2 mRNA upstream 5262 74151265 ~ 74184733 (+) False LOC110494547
XM_021569696.2 mRNA upstream 5262 74151265 ~ 74184733 (+) False LOC110494547
XM_021569693.2 mRNA upstream 5262 74151279 ~ 74184733 (+) False LOC110494547
XM_036950615.1 mRNA upstream 5262 74151315 ~ 74184733 (+) False LOC110494547
XM_021569695.2 mRNA upstream 5262 74151326 ~ 74184733 (+) False LOC110494547
XM_036950620.1 mRNA downstream 120259 74313191 ~ 74387161 (+) False LOC110493251
XM_036950617.1 mRNA downstream 120261 74313193 ~ 74387161 (+) False LOC110493251
XM_036950618.1 mRNA downstream 120261 74313193 ~ 74387161 (+) False LOC110493251
XM_036950619.1 mRNA downstream 140429 74333361 ~ 74387161 (+) False LOC110493251
XM_036950621.1 mRNA downstream 195496 74388428 ~ 74432420 (+) False LOC110493252
TU1699979 other upstream 210560 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 907976 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1064639 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1144407 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 1735071 72454563 ~ 72454924 (+) True G1484897
TU1700469 other downstream 195604 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 2490667 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 3815358 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3825436 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3996080 78189012 ~ 78190290 (+) False G1491963

Expression Profile