RNA id: XM_036950618.1


Basic Information

Item Value
RNA id XM_036950618.1
length 4951
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC110493251
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74313191 ~ 74387161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagaaagagacagggagaaaatGAGGGTGAAATTGACAAGTATAAAGAGATATGAAGAAAGGAGTGGGAGAAaaagagaaggggatagagaaagagggggagaccgACCGTGAGGACCacgaggagaaagagagatggagaaacagagggagTTTCAGTGTGTTGGAGAAAAAGAGAGCTAGAGCATttcaggagtgtgtgtgagtgaatgttaAAGAGTGCAAGATAATTATGTgatagagagggaaagggagacagagactcTGTGAAAAGGGGAGTGAGGAAAAAATGAATTGCAGATTGAGGgaccttctctccttctccctccctcttttatcTATCTCATCTGAAACCACGCCTCCCTCCTTTCACTTGTGTGTGCATCTATAACAGTAGGCTTTCAACGTCGGGCTATGTGGGGGTTAGACTCTCAGACTGCCAGCAGAGCGGACACTAGGGCACAGGACAGGAGTGTGTCCAGGACTGGTcagagcaggtgtgtgtgtgaaccgACGGACGGAGCTTTGTGTGTATCCTACGTGTGTCGGCTCACTCGCTCCAACCAGGGACATCGCTGCTGAGGAACACAGCTGGGAGGTGGAGTGAGGGagctgcagcagcagcagagtgCCCCGTGCTACAGTGAAAAAGAGGTGAAGAACACAGGGTAGAGCCATGGCAGGATGGggactccttctcctcctcctgtggGTGGTCTCCTTGGCCCAGGGCTCGTCCTTGTTCTCTGGTCAGCGCCACCGCACCCGTCTGCAGAGGGACCGTCAAGCACGCAACAACGTCCGACCCAACATAATCATCATCCTCACCGATGACCAGGACATTGAACTGGgcTCAATGCAGGCCATGAATAAGACACGGCGTATCATGGAGCAGGGAGGCACCCATTTCTCTAATGCCTTCTCCACCACTCCCATGTGCTGCCCGTCACGCTCCTCTATTCTGACAGGGAAGTACGTTCACAACCACCACACCTTCACTAACAACGAGAACTGTTCCTCACCCTCCTGGCAGGCCCACCATGAGCCTCACACCTTCGCTGTGCACCTTAACAACTCAGGGTACAGGACGGCGTTATTTGGGAAGTACCTGAATGAGTACAACGGCTCCTATGTGCCCCCTGGCTGGAGGGAGTGGGTAGCACTGGTGAAGAACTCTCGCTTCTACAACTACACTCTGTGCAGGAACAGCGTGCGGGAGAAGCATGGCAGCCAATATCCAAAGGACTATCTCACAGACATCATCACCAATGACAGCATCAACTACTTCCGCTCGTCCAAGAGGATGTACCCCCACCGACCAGTGATGATGGTCCTGAGCCACGCTGCCCCCCATGGGCCGGAGGACTCAGCACCACAGTACAGCACTGCCTTCCAGAATGCCTCGCAGCACATAACCCCAAGCTATAACTACGCTCCTAACCCAGACAAACATTGGATCCTGCGCTACACAGGCCCCATGAAACCTGTCCACATGCAGTTCACGAACATGCTGCAGCGCCGGAGGATGCAGACCCTGCTGTCTGTGGACGACAGTGTGGACAAGGTGTACAACATGCTGGTGGAGACAGGTGAGTTGGACAACACCTATATTATCTACACATCAGACCACGGCTACCATATTGGTCAGTTCGGCCTGGTCAAAGGCAAGTCCATGCCATATGAGTTTGACATCCGGGTGCCCTTCTTCATACGAGGCCCCAACGTGGAGGCAGGAGCCATTAACCCTCATGTGGTGCTGAACATTGACCTGGCTCCCACACTGTTGGACATGGCCGGATTGGACGTTCCCTCTGACATGGACGGTAAATCCATCCTGAAACTCCTGGACACAGACAAACCTATCAACAGGTTCCAGGTGAACAAGAAGGGGAAGATGTGGAGGGACTCCTTCCTGGTAGAGAGAGGGAAGCTGCTCCACAAGAGGTCTGATGGGAAGGACTTGGCCCAGGAGGAGAACTTCCTGCCAAAGTACCAGCGGGTCAAAGACCTGTGTCAGAGAGCACAGTACCAGAGCTCCTGTGAACAGCCAGGACAGAAGTGGCAGTGTGTGGAGGACCCTTCTGGTAAGCTGAGTCTGTATAAGTGTAAGGGCATGGCAAGTCTCTATGCCTCACGTATGCAGGCTCTGATGGCCAGCAGCGGGTCCCAGCAGTGGGTTGGACGTGTCTCCGATGCTGGAGACAGCTGTGACTGTGGCCCCCTAGGCCCCAAACGTTCACCCCTGAAGAGGAAGAGACTGCTCACCAAGAAGAAGGTAAAGTCCGGTAAGAGTCTGACTAAGAACCGTTGGGCCCGGTCCGTTCCATTTGAGCTGCATGGAGACATGTATGCTGTGGACCTGGTTGAGGGCTACAGGCCTGTGGGCCTCAGGAACACCAGCTggcctggggagaggaggagaggagcaggcctgCTGGAGGACAACGATGAGGAGTTCAGTGGCATGGGAGTCACAGCAAGACCCCCAACCAACAAGAGCCTTACACCAACTGCCGCTCTTAAAGTCACCTACAgGTGCTCCATCCTGATGAATGACACAGTCAGGTGTGATGGAGGACTCTACAAATCCCTCCAGGCCTGGAAAGACCATAAGCTCCACATTGAGCATGAGattgaaacaTTGCAGACGAAAATAAAGAATCTGCGTGAAGTCAAGGGTCACCTGAAGAAGGTTCGGCCTGAAGAGTGCCAGTGTAACACCCCCAGTTACTTATCCAAAAACAAAGGGATGTTCAGACTCAATGCAGGTCGCATTTATTCACTCAGCAAAATGCCCTCTAAGCAGAAGAAGCAGTGGCTGATGAAGGAGCAGAAACGCAGGAAGAAGCTCCGTAAACTGCTCAAGAGGCTCCGTAACAACGACACCTGCAGCATGCCTGGTCTCACCTGCTTCACCCACGACAACCAGCACTGGCAGACAGCCCCCTTCTGGACAATGGGTCCATTCTGTGCTTGTACCAGTGCAAACAACAACACCTACTGGTGCCTGAGGACCATCAACGACACACACAACTTCATATTCTGCGAGTTCGCTACAGGCTTCATAGAGTACTTTGATCTGAACAATGACCCATACCAGTTGATAAATGGGGTTAGCACCTTGGACCGCACTGCCCTCAACCAGATGCACCAGCAGCTAATGGAACTGAGGAGCTGCAAAGGCCACAAACAATGCAACCCAGAGACAGGTAGTAAAGACAGAAACTCCTTCAGTGAATACAGGCCAGTTCAGCGTCGAAAGAAGCCAAAAGTGAAGAAGCCCTCCTCCAAATCGCTAGGGCAGATTTGGGAAGGATGGGTTGGTTAGCAACCTGTGTCGCACAATCCACCAACAGAGTGTGCCAACAGAGGACGACCAGAACTGGAGAACCTGAGGACCTTGTACAGACTTCATGGGAATGTAACCTGAAATAGCATTATTGTAGGAGTTTATGGAAGAGGATGCTGATCCAACATTAGCTACCACTGATACTCAGATCATCACCCAGAAGAGAAAATACTGAAACAGCCAAGAAAATGAAAACTATAACCTCTCCCgtcgtctttctctctgtctcacacacacacacacacacacacacacacacacacacacacacacacacacattcacatcggcacacactcacacagaaatGTCCTTACCGCTCCTATCTCCCCAGATCTCAGGACCACCAACCTGAGTTGGAGACTCATCAGTTGAGCGTGGATACACTCTGAACCTTTACTTTGACTTTCAACAACTGCGCTGAGTGAACAGTGAATGTGAGGTGTGTTTAATATTAGTTTCTCGTTAACGCCTTAACATTGGGTGCCGAGATTAGCTTAATGTCAACTCTGCTGCTACAACCTGACATGTATCATCCCTTATGGCCTTGTGCCATTAGTATATGGTATATGATGTCAGGCAATTACATCAAGTcaagctttgcacactcacagCATGAAAAGTACTGTCAACAAAACATCAGTACCCTGGAAACTCTCCTCAAGGCCCACAACTCAAGACTCCTCACCTCCTTTTATTGGTGCTACGGCTACAGAATGATTCCCCCAGGACATGTACTCCATTCTTTTGTATTGTAACTAATATTAACGTTGATCAAATTTCATGCAAGGATTATTTACAGCCCCCAAGAATGAGGCAGGTGTGATGACGATAACACACCAGACTGTATGGGGATGAAGCTGGTTAGGATATGACACATCACATCATCATCTAGCTTATGCCCCCTAGTTCACTTCAAACTCAGGATGGGACTTCTCTAACCAATACCCCACCCTCCTAGACAATGGTACAAACAATTGGTATAAACATCTTCACACCAGCAGAACGCTTACATTTCATTAGTGGATGTCATTTTACTCCGTTGTATTGCTAATGCCACCAGCTAGGTCTGGTCAGGTTAGTTTGTTCAGCTTGCTATACATGGTGCAATGATAACATTGTGAAAATAAGGACTTGctgtacagtatgtatttgaATGTATGTTGTGCAGTTAATTTTTTATAATACTGAAAAGGAGGCAGACTTCTCTTTTGTGTTCGATATGAGTTGACAAATATGACCTTTTAGATAAGAACTTAGCCTGATGAATTGTCCTAGTTCTGTATTTGTCCGTTTGTTCTCTCTGCACATCTTTCTGAATTTCTTCTCTGCTCTGTCAAAACCCACTTTTAGTTTGAAAAAAAATAAACGTATTTATGATGAAAAAGCACTTAGAAAATATTCACTGTGAAAAGAATTCCCTGTAAAATGACTCTGCTCGTCTGCTGTACACAACAGTAAACAACACAACAATGTAATGCAGCTTGACATGCATATTCATTATATTGCCTTTTTTTGCTTTCTTCGTTTCTTAGCAGTGACACTCCCACAGCAGAGAGTTGTAATAGTGAGTAACTGTGAATAAAGTGTTGATTGCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1700371 lncRNA upstream 30901 74282067 ~ 74282292 (+) True G1487149
TU1700320 lncRNA upstream 78946 74233960 ~ 74234247 (+) True G1487100
TU1700128 lncRNA upstream 127453 74185537 ~ 74185740 (+) True G1486938
TU1700118 lncRNA upstream 167526 74145452 ~ 74145667 (+) True G1486928
TU1700052 lncRNA upstream 231743 74034319 ~ 74081450 (+) True G1486869
TU1700488 lncRNA downstream 24974 74412135 ~ 74412430 (+) True G1487264
TU1700491 lncRNA downstream 28664 74415825 ~ 74416409 (+) True G1487267
TU1700468 lncRNA downstream 44418 74431579 ~ 74432121 (+) True LOC110493252
TU1700530 lncRNA downstream 97113 74484274 ~ 74507789 (+) True G1487295
TU1700561 lncRNA downstream 159261 74546422 ~ 74555701 (+) False G1487325
XR_005037069.1 mRNA upstream 120261 74189995 ~ 74192932 (+) True LOC118940492
XM_021569693.2 mRNA upstream 128460 74151279 ~ 74184733 (+) False LOC110494547
XM_036950621.1 mRNA downstream 1267 74388428 ~ 74432420 (+) False LOC110493252
XM_036950623.1 mRNA downstream 1337 74388498 ~ 74432420 (+) False LOC110493252
XM_021569698.2 mRNA downstream 48456 74435617 ~ 74455534 (+) False LOC110494551
XM_021569700.2 mRNA downstream 48456 74435617 ~ 74455534 (+) False LOC110494551
XM_021569701.2 mRNA downstream 48456 74435617 ~ 74455534 (+) False LOC110494551
TU1699979 other upstream 333758 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1031174 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1187837 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1267605 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 1858269 72454563 ~ 72454924 (+) True G1484897
TU1700469 other downstream 1375 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 2296438 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 3621129 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3631207 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3801851 78189012 ~ 78190290 (+) False G1491963

Expression Profile