RNA id: XM_036950621.1


Basic Information

Item Value
RNA id XM_036950621.1
length 5135
RNA type mRNA
GC content 0.54
exon number 10
gene id LOC110493252
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74388428 ~ 74432420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGATGAACGAGAATTACCGGGATGCGGAGTTGGGGGATGACCCCATTATCGTGACTCACGTGCAGAGGCGGAGACACCATATGAATTACTACGGGACAACTGTCTCGTGTTCATACCGTCCAACAAGTCCTGATTGGGTGGAGATCCTGGAGCCACGCTCTCGAGAGCACATGTACCTGAACCTGGCCACCAGCGAATGCGGATGGGACCCTCCTTTGGGCACCGCCATTCGTCAGGCCGATGGTAAACAGTGGTGGGAGCTGTTTGACCCCCAGAGCGGCCGCTTCTACTACTACAATTCCGTGGAACGGCGGACTATCTGGCACCGACCCCAGGGGGGTGACATAGTGCCCCTGTCTCAGCTACAGGCTATAAAGCACTGTTCTGAGGCCAAGCGGGccggggagagcagagagaggcacCATGGGGCAGGGAGTACAGGGAGCCAGGGATGCCGCACCCCTCTTCCAGAGCACCTAGGGGCAGGGAGCCTCGGGAGTACAGGGAGCCAGGGATGCCGCACCCCTCTTCCAAAGCACCTAGGGGCAGGGAGTCTCAGGAGTACAGGGAGCCAGGGATGCTTCATCCCTCTTCCAGAGCACCTAGGGGCAGGGAGTCTCAGGAGTACAGGGAGCCAGGGATGCTTCATCCCTCTTCCAGAGCACCTAGGGGCAGGGAGCCTCGGGAGTACAGGGAGCCAGGGATGCCGCACCCCTCTTCCAGAGCACCTAGGGGAAGGGAGCCTTGGGAGTACAGGGAGCCAGGGATGCCGCACCCCTCTTCCAGAGCACCATGGGGCAGGGAGCCTGGGGCACCGCACTTCTCTCCCAGAGCAGGAGAACTCCGTCCCCAAAACCCCTGAAACCCACAGCGAGAGTGAGACCAAGGACATAGGACCAACTCAGGGAGGCAGCAGCTCTGACGGAACCGAGGAGTCACTGAAGGAGCTCTCTCAGAGATGGCAGCCTTCCCCAGTGTCTAAGGCAGCCATATTGATCAACGTGAACAGTGTCAGTCGGATCCAGCCTGGAGGCCCATCTAGCCCGGCCCTGCAACTCCgtcaccataacacacacaccaagcccagTGGCCACCAGACCTTCACCCTCCTCCCCGTCAGCAGCAAGCCCCCGTGGGCCCACTCCTGCTTTGCCCAGGGCTACAAGACCGCTCCCTCTGGCAAGATGGCCACCGATGCCCACCACCTAAGGAAGATGGGCAATGGAAGTTTCTATCTGGTGTCCTCTGACCCTCCCCAAACCCCAGGCAATCTCAGGTCCCAGCTCAGCACCCCCAGGTCAGTGTCACCCCAGTATGCCTCCACACTTCCCCTCTACGATGACGAGGGATCACAGTGTCCCATCTATGATGAGCCTCCTGCGGACATGGAGGTGGAGGGGGCTAACCTCCATAATGGGCCTGATGGTTTGTCCCgcctcacccccacacacagcctgCAGAAGCTCAGGCTCCTCCAGCACCCTGGCTCCTCTCACTCAATCTCTAGGCACAAGAGGAACCCCTCTGACTACAGTCCTGCTGGCCTGGAGGGCATCAGGCACATGGTCAATGTGGACCCCAAACAGGCCCTTCTGTCCAACTCCGCTGGTCTCAAACGCACCCCCACCCCACGGCCGGACCCTCTCTTGGCCCAGCCCGAGAGGGAGTCAGGGACCCCAGTGATGCCAGGTATCCTGGAGAAGAAGCAGACATGGCGGGCCCTGGAGGCCAGTGTGTTGAGGGCAATGGAGGCTCGCCACAACAGGCAGAGCAGCAAGGACTTCCAGACACCTCCAGGGCCCCAGACCACCATCACCTACCAGGACTCTGGCTACTCCACTGGGCCCTCACCCAGCCTGAGGAGGAAGAGCCGGCGGAGGGTGGGGGCCGGGGGGAGACCAGGCTCAGTGGGCAGCAGCGGGGACCTGTGTGCCCTCAACGAGAGGCTGATGTTGGAGATGAGGGAGGTGGTGAGCCGCTCCAACACCATGAGGGAGATGAAGGATGGAGGCCTGGGGGCGCGAGAAGACGTCCACTCCTCCAGCCGTTTGCTGAGCAGGGTAGGTAATCATAGCATCCCGGCCCTGGCGCCGCTGGAGATGACAGGAAGGCAGAAGAGGACCTATGAGAAGGTGGACAGCCTGAAGAAGAGCATCACCAGCCAAGCCAGCCTCTCCTCACCAGACACCCCCGGACCCCCCTTACAGGTGGGGACCCTGGAACTGAAGGCTCAGTTGGACAGCAGGAAGAAAGGTACGGTAGATGGACAAACAGGCTCACTGGGCCCCCACCACCAACTCTCCATCTCCCAtgacaacagagagggaggaggaataggaggctCATACCACCAGCTCTCTTACGCCACACTGCGCCAGCCCCCGACCACAGACACCTCAGGCATGGCGGACTGGGCCAGCAAGCACCTGAACATGCACACCCAGGGCCTGTTCCGCCGCCGTGTCTCCATCGCCAACATGCTCTCCTGGAACCGCGGCTCCATCAAGAAGCCCATGCTGGTGACCAGCGACCGCGCTGTGAGGAAGGAGGCCTGTGAGATGTTCAAGCTGGTCCAGGCCTACATGGGAGACAGACCCTCCCGCCTAGACCGCCGCCACACTTCCCTGCTCATCATCACTAAGTGCTGGGGCACGCAGGGCCTGAGGGACGAGCTGTATGTGCAGCTGGTGAGGCAGACCACGGGCAACACCAGCCCAAGGAGCCTGGCTGCAGGCTGGGAGCTGATGGCTGTCAGCCTGGCCTTCTTTGCCCCCTCGCCCAAGTTCCGCTGCTACCTAGAGGGATACATCCAGAGGCACTCGGATCCGAGCAGCGACAATAAACAGGTGACTCAGTTCATACTAGAGCAGCAAGACATGAAACTGAAGAAGAACTCAAAGTCCAGAAAGAAACGGAAACAGAATACAGATGAAGAAGGTCTACCTATCAGCTCGTACGCAAAGTTCTGCTATCGCAAACTACAGAAAGTGGCCGTAACTGGAGGCAAAAAGGGTCTTCGTAAGCCTACTCTGGAGGAGATTGACCACAGCAGACGGGCCATCGTGACCCCCTCCCTGTTTGGCAGCTCCCTGGACGAGGTGATGGAGCGCCAGAGTGAACTCTTCCCAGACAGGAAGCTACCCTGGGTACAGGTGCAGCTCTCCCAATACGTCCTGGCACTGGGAGGGGCCCAGACCGAGGGCATCTTCAGGGTGCCAGGAGATATCGATGAAGTCAACGCACTTAAGCTTCAGGTTGACCAATGGAGGATCCCAGAAAACCGCTCAGACCCCAACGTACCTGcctCCCTTATGAAGCTTTGGTATCGTGAGTTGGAGGAGCCTCTCATCCCCATGGCCTTCTACAAGCAGTGTGTCAGTAACTATGATGACCCTGTGGCGGCTGTCAATGTTGTCCAGTGCCTGCCTGAGCTCAACAGACTGGTGCTGTGCTACTTCATCCACTTCCTGCAGGTGTTTGCTCAGCCTGCCAATGTGTCTGTTACTAAGATGGATGTCAATAACCTTGCCATGGTGATGGCCCCAAACTGCCTCCGCTGCCAGTCTGATGATCCACTAATCATCTTTGAGAACACACGCAAGGAGATGTCCTTCCTGCGCATGCTCATCGTTCACCTGGACACCACTTTCATTGAGGGTGTTGTATAGACTGACTCCTGCCTTCCCTGACATCACATGCCCCATGGTCACAGAGAGATTCACTCTGCTTTTCTGTATGATGCCTGCCCCACTCCATTGACTGGTCTGAAAGCACGAAGCAGCAACACATGCAGTGGAAAATCAtagtatatgttacgaatttgttgTGCTTAATATCCTGGAGTGCATCTTTAATACTGTCACTTGACATTGGACCCGCCCTCTGTTCTACTGGCTGGCTGCAGaacaatacatactgtatgtgctgaCTGCAGAGGAGATATTGTGCTCTTTGATGGAAACCCCACAATGATGACACTCAAAAAGACTACAAATGACTTCACATCGTAGGTAGCGGTTTTTATCCAGTTCGTTTTGATGATTTTTTAACTGCATGTAAAATCTAAATGTCCTTATGACTGAATGTGAAGTGCTATTGTTCCACTGGATATGTGGGCTGTGCATAAGGAGTTTCATATTGTTTGTATAGGACTTTGTCGCCAGGAAACGGGGCAACTGACAAACAGACCCGGGGTCCCTGCCTTATTTATATCTACATAGAAATCATGTTGATATTTGGCCTCTTTTGTCGGGCTGCGTGTGTGTTtttgggtgcgtgtgtgtgtgatgaggggGAAAATATATTTACAATGTCTCATTGGAAATGAGCTTGCCTGTGATGTTTTAGTAGTTGTATTAACAAGAGCCTGCATTAGTCTCAATGCTATGTTGATGCTTTTATCTGAAGCGGCAGAGTACCACCACAGCTAttttaatatactgtacagtcaGAGCCTGGCACGTGTCAAAGTACAAACTGTAAGAAATAAGACCATGTGTTTTGGAGCTTATGTAAAATGCCCTTTTATAGTGGTCTGTGGAGAGAGTGTTCTGCACTAAAAACCTTCTGGTGTTAAACTGCTGAGGAAGGAGGTTGTAAATGTATACTGTCTGGTACATgtatgtgttgtactgtactgtgtgtatggGAGATCTATTCAAGGCGATAAACCAATATCTCGTTGAAAAGAGGCATAAACAAATGTATAAAGTACTACTGTCACATTTTCTTTGTGGTCTATAGATCTTTTGGCTCAGGTGTTCTGTTACAACAGTTTTAGTGATAACTGCTCTCTGCTTCCCGGTCTACCTGAAAGTCAGATTTTTACGTGCTCCAAAACTATAGATGGGGCAGATAAGACTGTCCCTGAAGGCTTTGCTCATGTAAATAATGCTTGTACATAGTCAAATCTATgggtgtattttttttaatgatccAGGGTAAAGGTGAATATTTCTGTTGCGATAGAGAAAAAAAACAGGTGTTTTTGTTGGTTTTTTAATTACTGTTCATTTCCTTGCTGTAAACTTGCCTTTGACAATAGTACTGATTCAACCACTCGTGTGTGCGTTTATTAACCTCTGTTACTCTATGGAAGGATTGTTAATGAAAAATAAAGGTTTGTTTATTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1700375 lncRNA upstream 74992 74313283 ~ 74313436 (+) True LOC110493251
TU1700371 lncRNA upstream 106136 74282067 ~ 74282292 (+) True G1487149
TU1700320 lncRNA upstream 154181 74233960 ~ 74234247 (+) True G1487100
TU1700128 lncRNA upstream 202688 74185537 ~ 74185740 (+) True G1486938
TU1700118 lncRNA upstream 242761 74145452 ~ 74145667 (+) True G1486928
TU1700530 lncRNA downstream 51854 74484274 ~ 74507789 (+) True G1487295
TU1700561 lncRNA downstream 114002 74546422 ~ 74555701 (+) False G1487325
TU1700562 lncRNA downstream 114002 74546422 ~ 74555701 (+) True G1487325
TU1700618 lncRNA downstream 210259 74642679 ~ 74643086 (+) True G1487372
TU1700584 lncRNA downstream 224258 74656678 ~ 74657334 (+) True G1487346
XM_036950620.1 mRNA upstream 1267 74313191 ~ 74387161 (+) False LOC110493251
XM_036950617.1 mRNA upstream 1267 74313193 ~ 74387161 (+) False LOC110493251
XM_036950618.1 mRNA upstream 1267 74313193 ~ 74387161 (+) False LOC110493251
XM_036950619.1 mRNA upstream 1267 74333361 ~ 74387161 (+) False LOC110493251
XR_005037069.1 mRNA upstream 195496 74189995 ~ 74192932 (+) True LOC118940492
XM_021569698.2 mRNA downstream 3197 74435617 ~ 74455534 (+) False LOC110494551
XM_021569700.2 mRNA downstream 3197 74435617 ~ 74455534 (+) False LOC110494551
XM_021569701.2 mRNA downstream 3197 74435617 ~ 74455534 (+) False LOC110494551
XM_021569703.2 mRNA downstream 3197 74435617 ~ 74455534 (+) False LOC110494551
XM_021569704.2 mRNA downstream 3197 74435617 ~ 74455534 (+) False LOC110494551
TU1699979 other upstream 408993 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1106409 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1263072 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1342840 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 1933504 72454563 ~ 72454924 (+) True G1484897
TU1703557 other downstream 2251179 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 3575870 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3585948 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3756592 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3756592 78189012 ~ 78190290 (+) False G1491963

Expression Profile