RNA id: TCONS_00047197


Basic Information

Item Value
RNA id TCONS_00047197
length 560
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id XLOC_023468
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24553793 ~ 24695757 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGTGTGGCTTCCTATCTAAACGATCACATTTAAGGACAAAGTGCATGTTTTGCCTTGTCATGTGCTTAAGTGTTTGATGACAGCTTTGTGAGGGCCGTTTGCAAGAGACTCAATGAGACTTAAATTGATTTAAGACCAATTCTCCAAGCTGCTTTACATGTCGACTCGTCCATACACCTTATGAACAGGAAAAGGATGGATTTTCTGTCATACCTTTGAACCAATAACCCTAAAAGGTGCTAAGCTAGGGAATCAACGGACGGATGATGCATCAAAAAAGTGTTCAGAGTCGTTACCTGGACACGAGAAGGTCAAAGATTTCCAGATCCAGAAATCAAAGCAGCTTTTCCAGTGGATCCTGTATTCTGGAGATAGATGGGAGGAAAAGCTGGCGTGATTGAGCCACCGCTGCGGGAGCGTCTGACTGACAGGTGTTTGGCAGGTCAGGCCCTCTCTGTAGAGTCTGCCCTGCTTCAGGACACACTCCTGTCATCTCAGGTGAATCTGTGCACATCTAAAGCAGAGCCAGCAGGCCGGATAAAGAGCCCTCGTCCCACT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046424 lncRNA downstream 95112 24416324 ~ 24503022 (-) False XLOC_023466
TCONS_00046862 lncRNA downstream 105617 24492203 ~ 24492517 (-) True XLOC_023467
TCONS_00047196 lncRNA downstream 141772 24439129 ~ 24456362 (-) True XLOC_023466
TCONS_00047194 lncRNA downstream 141788 24416324 ~ 24456346 (-) False XLOC_023466
TCONS_00046423 lncRNA downstream 146287 24416324 ~ 24451847 (-) False XLOC_023466
TCONS_00047199 lncRNA upstream 105019 24800776 ~ 24828667 (-) False XLOC_023471
TCONS_00047200 lncRNA upstream 105019 24800776 ~ 24829401 (-) True XLOC_023471
TCONS_00046437 lncRNA upstream 280579 24976336 ~ 24982957 (-) True XLOC_023474
TCONS_00047201 lncRNA upstream 312560 25008317 ~ 25026099 (-) False XLOC_023476
TCONS_00046443 lncRNA upstream 327668 25023425 ~ 25026099 (-) True XLOC_023476
TCONS_00046420 mRNA downstream 315707 24273371 ~ 24282427 (-) False XLOC_023465
TCONS_00046421 mRNA downstream 316328 24273449 ~ 24281806 (-) False XLOC_023465
TCONS_00046422 mRNA downstream 316342 24276566 ~ 24281792 (-) True XLOC_023465
TCONS_00046419 mRNA downstream 326505 24183752 ~ 24271629 (-) True XLOC_023464
TCONS_00046416 mRNA downstream 429601 24164227 ~ 24168533 (-) False XLOC_023463
TCONS_00046425 mRNA upstream 6023 24701780 ~ 24724233 (-) False XLOC_023469
TCONS_00046426 mRNA upstream 6263 24702020 ~ 24724284 (-) True XLOC_023469
TCONS_00046427 mRNA upstream 37550 24733307 ~ 24797455 (-) False XLOC_023470
TCONS_00046428 mRNA upstream 47532 24743289 ~ 24796695 (-) False XLOC_023470
TCONS_00046429 mRNA upstream 47773 24743530 ~ 24796583 (-) True XLOC_023470
TCONS_00046414 other downstream 435024 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other downstream 451259 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046409 other downstream 479739 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046400 other downstream 620849 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046386 other downstream 1324775 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046441 other upstream 312560 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046479 other upstream 1663482 26359239 ~ 26362471 (-) False XLOC_023496
TCONS_00046480 other upstream 1665989 26361746 ~ 26368871 (-) True XLOC_023496
TCONS_00046487 other upstream 1779425 26475182 ~ 26479841 (-) False XLOC_023500
TCONS_00046496 other upstream 1813131 26508888 ~ 26534654 (-) False XLOC_023502

Expression Profile

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