RNA id: XM_021569709.2


Basic Information

Item Value
RNA id XM_021569709.2
length 5537
RNA type mRNA
GC content 0.48
exon number 17
gene id LOC110494551
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74435617 ~ 74455534 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCGCCGGTAGTGCGACTCGAGTGCATCGGGAAGAAAATTTTACTGCGTGCACTGGAATCAGACGTGGAGGCACCACACGAAAATATTTTATCGCTCATTGCACATCATCATCGGAAAGAATACTCAGAAATCAAGCAGGAGGTGGATGTGGACACAATGAGCAAGACACCCCCTAACAGAAGAGGAATAACCTTTGAGGTGGGAGCAACGCTGGAGGCCAGAGACGCCCTCAAAAACTGGTATCCGGCCAACATAGAGAAGATTGACTATGATGACGAGAAGGTCCTGATCCACTACCGTCAGTGGAGCCACCGCTATGATGAGTGGTTTGACTGGACCAGCCCCTACCTGAGACCTGTAGAGAGGATCCAGCTGAGACGACAGGGACTGCTGGACGACTGTCCTATCCCTGTAAGAGATGGATTTCATGTGAATGACAAGGTCCTCGCCAGTTGGTCTGATTGCCGCTTCTACCCTGCCAAGGTCTTGGCAGTGAATAAAGATGCATCTTACACCGTGAAGTTTTATGATGGCGTCGTCCAGACGGTAAAGGGGATCCACGTGAAACCTTTTGTAAGAGAGagaggaggaggaaaggctCGGTCCACTGAGAAGAATGGCGTGAAGAAGCCCCAGAATGGCAGAGACCGGAGGCCTCAGGAATACGgcccaaaaaataaaataacaagatGCAGTACCTCTGACCAGGAGGGGGACAGTGACACAGAGGATGGTGACAATAATGATGAAGATGAATGGcatgagagggaggtggaggagaagacaAAGAGGAAGGATAGTGAGGGGGATGTCACCAAAGAGACACCATCCATAGTtaagcagcaggaggaggataCAGAGCAACATGCAGGACAGAACAACCTCGGGGATCACGTGGCAGCCACTGTGGGCCCGACTGAAGTAAAAATGGAAGAAGACGGAGGACAGAGTGAGGAGAAGCCTACTCATTTAAATGAAGGGATAAAGAAAGAAGAGGTGGAAATGAAAACTGAGTACACAGTCCTGAGCTCACCTAATGAAACTAAGCCATCCACTGAGTCACCCAATCAGATGTCAACACAGACTGGGCCAGTGTCTGTCCCATTACCCTCAGCTATGTCCACCATTGACCGAGTGGAGCAGATGTCAGAAAGCCAACCGGATAGCGCCAAACCTGCACCATTGGCCCTCCCAGTGAAACCGATAAGGAAGCAGGGTTTCCACAACCCCAACCGATTTagcagagagccatTGTACAGAGTGATCAAAAACCAGCCTCCCCCAGTCCTGTCCATCAACTTGGACCACAACCCATTTAAATGCAGCGCTGTAGGCTGCACCAAGTCGTTCCGCAAGGCCAAACTGCTTCACTACCACATGAAATACTACCATGGAGAGGAGCAGCAGCTAGAGGACGATCTAAGCCCCACCAGGAGCGCCCAGACACGGGCCTCAGAGAAGCACCCCTCCCCTACCTCTCTGGAAAGTCCTAAGAGGAGACGCACCATCTCCGCCTCAATGCACTCCAATGTGCACAGTCCTACTAGAACTCCCCCATCTCCACGTAGTGAGGCCAAGACAATGAACAGACGCACATCAGCTCCACCTGCTGTCAACACCCAGCGCCAGCAGCAGAGGGCTCTACTGAGGGAGAAGAGCAAAGAGAACCAACTGGAcagaaatggacagagaccagtggAGACGGAGACTACTGAGAGCAGTGGTATGGACATATGTCTGTCAGTGGTGAAAGAACGAGATCGGCTGAAGGATAAGAAACAGAGGGAGTTCCTTCGTATTaatctgaagaagaagaagaagaaaaagaaggtcAAGTGTGAGTACACAGGTAGTGAGGAGAATATTGACATCTCAATATTCGCTCTTCAGTCCAAATTGAATTTGCCACTCAAATTCCCCCTCTCACACAATCACAAGCCTGAGTCCTACCACTTCAGGCCCGGATACAACCAGTCAGAGCAGATGCACGTGGATGATGAGGATAGCATCAGTGATTGGTCCACTGACAGTTGTGAGTGGAGTGATGACGAGCTGGGGGCGGAGCTGGACAATGCAACAACTCCCCTAAGTCTGGGCTCTGTTGCCTTGGAGACAGGCAGTCAGGAGGTTGTGCGTTGCGTCTGTGAGGCAGAAGAGGAAAACGACTTCATGATACAGTGTGAGGAGTGTCTATGCTGGCAGCATGGCACCTGCATGGGCCTCCTGGAGGAGAACGTCCCGGACAAATACGCCTGCTACGTCTGCAGAGACCCACCAGGTCAGAGGCAAAGCCTGCGCTACCGGTATGACCGTGATTGGCTGAGCAGTGGTCACATGTATGGTCTGTCCTTCCTGGATGAGAACTACTCCCACCAGAATGCCAAGAAGATTGCCGCAACACACCAGCTACTAGGAGACGTACAGCGTGTGGTGGAGGTGCTCAATGGCCTCCAGCTCAAAATGAGCGTCCTACAGACCCAGACCCACCCAGACCTGCAGTTGTGGTGCCAGCCCTGGAAGAGAGCAGAGAGGCCCTGGAGGAGAGGTGGGACGGGCACCGACGCAGCACCCTCTCCTGCGCTAACAGACGAGGGTTCCGAGAAGGACCACAAGAGTCTCGCCCGTGGTGGCGCAGAAGCTCTGATGTCAGCCGCCATGGAGAAGCTTAGCcgagcctcctcttcctcctcctcgtcttcctcctcgCCCTATCAGTCGTTCCAGGACTCGTACATAATGAGTGAGCATTGCTACCAGAAGCCGCGGGCATACTACCCTGCAGTGGAGCAGAGGCTGGTGGTGGAGACCACACGGAGGGGATCTGAGCTGGAGGACAGCCTAAGAAGCACTGAGGACCTGCTGGAGAGAGAGCAGCGCTATGGAGGCATGCTGGAGACAGCCAGGCCCAAAGCCCCCACACATCTGAACACTCACACCAAGGGTTCAGATGTTGGTCGGTGGGGCCAGGCCGAGGTGAAGCGAGAGGAGGGTGTTGGCTGCGGTGGGGGAGGGGACGTGGACGGCAGTGGCCAGCAGCACCAGTGGCAGATCAACCTGCTGGATCACATAGATGCTGTCCAGGACGAGGTCACACACAGGATGGACTTCATCGAGAGGGAGCTGGATGtgTTGGAGAGCTGGCTGGACTACACAGGAGAGCTGGAGCCCCCAGAGCCCCTGGCCCGGCTGCCTCAGCTCAAACACCGCATGAAGCTGCTGCTTACAGAGCTGGCCAAGGTGCAGCAGATCGCTCTGTGCTGCTCCACATGAGGGCACAAGTGAGCAGTGTGACATCCATGTTCACAGCACTCGGAGAGACAATGAGGGGATTTGATTAATGCCCCGGGCCGGCCCTGTGTGAACCATGTCAGCATTGTTTGCATTAGTTTTGGAACTGGGCTGCCTCCCGGACGTGAGCCAGGTGGCCCGTTTTGGCCGTCCACAAAGTCTGCTCCAAACTAAAGTGACGTAGGTTAAGCATGTGGAGTAATGAGTAGGGTtctgttttcacatgcaaaagtgattgcttttgagAAGGCTTTATCTGTCTTCCCAATGAAAACACATTATTCTTTTCCATAAAATATGTTTCGGAATGATGCAccgctgggcacacactggttgattcaatgtttccatgtcatttcaatgaaatgacgttgaaccaatgtggaatagatgttgatttggcatctgtgcccagtgggaggctgccttgttgacaacatgaccgaGTGGCGCAGATCACTGTTCAATTTGAGAAGGGCGCTCCTCCCTCACGGCTTTTACCCGTCACAGGCCATAGCCCGGTGCACTTAATTGAACTCCCTCATTGCAGTTGAGAGCAGCACTAACTGGTCTATCTATGGCATTTGGGGGTTGGACTGAGGAGAATTTACCAGATAATGTAATGCAAATGCACTTATTTTCATTATGCTGTAGACTGGTGGGCGCATCTCACGGCATGGGGTTGAATGCTTGAGGATGTCAGTTGGTCTTCCTCTTTAAGGCCTCATGTCTGTACAGGGAAAACTCCACAGAATGGAAGTGTACTGTATCATAGTCAAAGATACAGATGGTAATGGATGGAGTAAATATAAGAGAACCAACAGGGACAGTTTATGGTAGTATGGGTTTGTTGGTGCAAACCTGCATCATGCCTTGGTCTGAGGTTCAGTTTGAAGCTTGCTGTCAGGTACTTACCAAATTGTTGCGCTGCAATGTGTATTCAAAGACTGATAGGCACACTTTTAATCTTCATAATGTCAACTTTCAGTAACTGACTGAACTCTTTCCTTGGAGCCATGTTCAGCAAACTTTTTTTCCTTTCTGTAAAGTACTTAGTATTTGATTATCTCCCATTGCATAATTGTTAAGCTTATGTTTGTTGAACATGTGGACTGTTTTACGGAGCATAGCCGTAATATTAGGgctgggacgataccagtatttCAATACTCATTTAGTGCCGTGGCAAGGAAACATAACACTGTGGATTTAACTTAGGAAAACAGCCATAATGTTAGAAACAAACATCATTCTGTTGTCATCGAGtcacattttatttatatttcaaGCTATAGCACACTATTTTACATtaagcaggtttttaaaggataaACAAGTTTAGTCAgttttgttttcatttttgccatgggaAATGTTTTGCGATACCGGTATTGTCACAGGCCTACTTCATAAGATTTTAAATAGGGAGTGAAAATACAAACTATATATTCTTATATAATGGCACTGTAGGTAGATAAGTACTGTCTTTCTGATTTTACGCAGTGAATTATATTGCTACAGCTTATACAGTTAGTGTCTGTATTATAGACACTGGAGGGACAGTGTCACACATTTTGACAAGTGACATTTGTGGATtgaaagtatatatatattagttgaaatgtttgttttctttccATTCTCATTGTTTTCTTGTGGATATCCTCTATCCTATTCACTCTTGTCTCGATGTCTTTGGTTGAATTCCTGCCCGACTACATTGCAGCTGTATGCCAGATCTTTGAAAGCATGTATAGATAGGTATTTAACATTTTTAGTTAGCCACATCAAATGATCTCGCAATCAGGTGCCTGATTCCACAGTCGATGACTTATCACAataccattggttgatgcaatgcAACACCTGCCCATCTAGTTGGGTAGGAACTCGACCTTCAACTTTGCTTCACTGTAGCCTTTGACCTTTGGCTTGCTGCAAATAATTGTGGAGATGTCTGCTATGACCTCAGCATTATGTGCTCTGTTCTCAGTGAAAGACTTGACGGACCTATACATTTCTCTTGTATTCTTTCACCTGTACTGTTTATTTGCAATATTTTGTGTAAATGCATCTGAATGTTATTTTCTTGGGTTGAATTTGTATTGATTAGTTATTTTTAAACAGTCCTCCAAAAATAACCTTGCCCTACTCGTGTCAGCCAGGTTAAGAACCAAACGAGATGTTGAAAGAAGTGCAACAGATGCTGGTACATAAATAAACTACTATCCCTCCCATTGATATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1700468 lncRNA upstream 3511 74431579 ~ 74432121 (+) True LOC110493252
TU1700491 lncRNA upstream 19223 74415825 ~ 74416409 (+) True G1487267
TU1700488 lncRNA upstream 23202 74412135 ~ 74412430 (+) True G1487264
TU1700375 lncRNA upstream 122196 74313283 ~ 74313436 (+) True LOC110493251
TU1700371 lncRNA upstream 153340 74282067 ~ 74282292 (+) True G1487149
TU1700530 lncRNA downstream 28740 74484274 ~ 74507789 (+) True G1487295
TU1700561 lncRNA downstream 90888 74546422 ~ 74555701 (+) False G1487325
TU1700562 lncRNA downstream 90888 74546422 ~ 74555701 (+) True G1487325
TU1700618 lncRNA downstream 187145 74642679 ~ 74643086 (+) True G1487372
TU1700584 lncRNA downstream 201144 74656678 ~ 74657334 (+) True G1487346
XM_036950621.1 mRNA upstream 3212 74388428 ~ 74432420 (+) False LOC110493252
XM_036950623.1 mRNA upstream 3212 74388498 ~ 74432420 (+) False LOC110493252
XM_036950617.1 mRNA upstream 48471 74313193 ~ 74387161 (+) False LOC110493251
XM_021569719.2 mRNA downstream 485 74456019 ~ 74505674 (+) False LOC110494552
XM_021569721.2 mRNA downstream 485 74456019 ~ 74505674 (+) False LOC110494552
XM_036950638.1 mRNA downstream 3883 74459417 ~ 74505674 (+) False LOC110494552
XM_021569720.2 mRNA downstream 30922 74486456 ~ 74505674 (+) True LOC110494552
XM_021567515.2 mRNA downstream 55247 74510781 ~ 74517438 (+) True LOC110493253
TU1700469 other upstream 26443 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 456197 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1153613 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1310276 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1390044 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 2228065 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 3552756 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3562834 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3733478 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3733478 78189012 ~ 78190290 (+) False G1491963

Expression Profile