RNA id: XM_021567515.2


Basic Information

Item Value
RNA id XM_021567515.2
length 1367
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110493253
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74510781 ~ 74517438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGACATACAGCTAGAGAAGCAGCTGGTCATGGGGACTTGCCCAATCAAAGTATGGTCCAATATGCCAACTCTGAAGAATCCAACTGAACCTGCAATGCCCATGGTGGTATCCCTCTATGACATCCCCTCCCAAGGTCCCTTGGAATCCAGCATCCATATAGGGGAGAGGCTCACGGTGTTATTAGACGATGGGGATTTTTGGGTGGTGCGATCCACAACGACAGGCAATGAGAGTTATATCCCCAGCAACTACACTGCCAAAGTAATTAACAGGTGGCAGTATCATGGCATCAGCAGGTTGAATGCAGaggagctgctgctgctgtcacACAATCACACAGGGGCTTTCCTGATCCGAGAGAGTCAGACAAACACAGAAACCTACTCCCTCTCAGTCCTTGTGAAGAAGGACTCATATCTGGCCACAGTGAAACACTACCGCATCTGTCGCCTCCAAAACGGCTGGTTCTACATCTCCCCCAGCCTCACCTTCTACTCCCTGGGCCAATTAGTGGAACACTACTCTGAGTCAGCAGATGGGTTGTGCTGTTTACTGAGGGAGCCTTGCATCATCCAAGGCTCAAACAAAAGTACCCTGACCACCAGACCGTATCCCAAAGCTATCAGGAGGCCCACACTCAACTGGAATGACGTAGACAGTTCAATGATCTTCAATAAGGCCAGAGTGGATTCAGAGGACTCTCTAGTGAGCGAAGGTCTGAGGGAGGCCGTCAGCTCATACCTCTATATGACAGAGGCCAGCTGCCAGAACTGTGGCAAACACTGGGATACATGAGGAAAGGGAGGACTATGAGAGTAAAATAGCCAGACATTATGCTGTCTGGTCTGCTGTTGTGTAGGTGTAATGGTACTAAGCCAGAAAGGATGAGCCTACCATTTACAACCACaatgaaaaaaatgaaaactaCAAGCACAATCAATGTTTTGATGGTAGAATGTGTGTTAGGGTTCAGGTAGCCACAGGGAAGCCATGTTATGTGGCACTTCTCAAGTCTTCTAATGCTGTAGCTGTGCATGTGCTCAAGAGCACATTTCAGAGGCTGGAACCGAAAGGTATTATCTGTACTGTCTTTGGTATTATGATGTGATGAGCACTTCCTTTCAGCTCTAGGAAGGTTCCATTCTGCTTGTCCACACAGAAATGCCCATGCATTggtctattttattttttttaccaaagAAGGAAGATCACTGAACGACAAGAACGTTTTAATTGTACTAAATGTTGAATCGATTGTTAGTTTGGTCTGCAATCTGTTACTCTGCAATCCATTTGTATATGAATGAAATGCCATGTCTGAACTAACTTGAAACGAACTCTGACTTTTTAGCGCATTTGGCTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1700530 lncRNA upstream 2992 74484274 ~ 74507789 (+) True G1487295
TU1700468 lncRNA upstream 78660 74431579 ~ 74432121 (+) True LOC110493252
TU1700491 lncRNA upstream 94372 74415825 ~ 74416409 (+) True G1487267
TU1700488 lncRNA upstream 98351 74412135 ~ 74412430 (+) True G1487264
TU1700375 lncRNA upstream 197345 74313283 ~ 74313436 (+) True LOC110493251
TU1700561 lncRNA downstream 28984 74546422 ~ 74555701 (+) False G1487325
TU1700562 lncRNA downstream 28984 74546422 ~ 74555701 (+) True G1487325
TU1700618 lncRNA downstream 125241 74642679 ~ 74643086 (+) True G1487372
TU1700584 lncRNA downstream 139240 74656678 ~ 74657334 (+) True G1487346
TU1700583 lncRNA downstream 139985 74657423 ~ 74657775 (+) True G1487345
XM_021569719.2 mRNA upstream 5107 74456019 ~ 74505674 (+) False LOC110494552
XM_021569721.2 mRNA upstream 5107 74456019 ~ 74505674 (+) False LOC110494552
XM_036950638.1 mRNA upstream 5107 74459417 ~ 74505674 (+) False LOC110494552
XM_021569720.2 mRNA upstream 5107 74486456 ~ 74505674 (+) True LOC110494552
XM_021569710.2 mRNA upstream 55247 74435636 ~ 74455534 (+) False LOC110494551
XM_021569723.2 mRNA downstream 235 74517673 ~ 74529873 (+) False LOC110494553
XM_021569724.2 mRNA downstream 235 74517673 ~ 74529873 (+) True LOC110494553
XM_036950646.1 mRNA downstream 100379 74617817 ~ 74622094 (+) False LOC110494557
XM_036950640.1 mRNA downstream 100422 74617860 ~ 74622094 (+) False LOC110494557
XM_036950641.1 mRNA downstream 100422 74617860 ~ 74622094 (+) False LOC110494557
TU1700469 other upstream 101592 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 531346 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1228762 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1385425 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1465193 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 2166161 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 3490852 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3500930 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3671574 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3671574 78189012 ~ 78190290 (+) False G1491963

Expression Profile