RNA id: XM_021569724.2


Basic Information

Item Value
RNA id XM_021569724.2
length 3075
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC110494553
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74517673 ~ 74529873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTCGTCACAAGCTTAtatagccacaaagtcataaacacCGCCCATTTCTACAATTGATCTTCTTAAAAACTAACCGCTAATTTATGCCTAGCCCTAACCTTGAATTAACACAAACAAATTGTAGCCAATTTTGACCTTGTGACTGTGGAATCTGATGagatctagctagctaaatctTCCTGCTTGGAACAGTTCAGGGATAACAAATAATGCCGACGCTTCTGGGGTTGGAGTCCCCTTGGACTGGAGGAAAACGAAGTGTTCGTAATGGAAATATTATTGCAAAGATCAGACATAGTCAGATCGTTGGCCGGGGTTTCAGCCGAGGGACACAGCTCCCAGAGGCTCTTCTCCAGGAGAGGGATAAGCAGGCCAAATGGCACAGTATCCCCAAGCTGCTGCAGGAGCTCCATGAAAGCAGCCATCCCAACAGTGACCTCTCCTACACACACAGTGTACTAAAGGAACTATCATCCCTACTTTCCATGGAGGCGATGTCTTTTGTCACAGAAGACAGGAAGAGTGCTCAGGAATCAACCTTTCCCATCACATACACCTTTGACCTCTTTGGTGGAGTCGATCTGCTTGTAGAGATCTTGATGAGGCCTACACTCACTATGCAAAAGAAGAAACCTAAAATGAATGATGACTTGGTCAATGACTGCCTTAGTGTTCTTTACAACTGCTGCATATGTGAAGGGGTAACAAAGAGCCTTGCAGCCAGAGACTACTTTGTCCTGTTTCTCTTTACCTTGATGACGAATAAGAAGACTTTTCTACAGACTGCCACTTTAATCGAGGATATTCTCGGAGTTAAGAAGGCGATGATCCAGTTGGAAGGGATTGCTAACCTGTCTGGTCTGGTCCAGAGCTTTGACCAGCAGCAGCTGGCTAACTTCTGCCGCATCCTCTCTGTCACAGTCTCAGAACCCGACTTGGGGAATGATGAAAAACACACCCTGCTGGCCAAGAATGCCCAGCAGAAACAAGACTCTAGCCTCTCATGTGCAGAGGACAACCAAGTGACCCTCCTAAACATCCCGGGCTTCATCGAGCGCCTGTGTAAGCTGGCCACCAGAAAGGTGTCTGAGGCCACGGGGGCGTCTAACTTCCTGCAGGAGGTGGAGGACTGGTATACGTGGCTTGACAACGCCTTGGTGCTGGACGCCCTCATGCAGATGGCCATGGAGCAGGCTGAGCACACCAGCACAGAGTCGTCAGACGAGAGTTCGTTGGCCACCAGTACTCTCATGCACCGCTTGCCCCAGTCCATGAAGATTGTCCATGAGATCATGTACAAGGTGGAGGTGCTGTACGTGCTCTGTGTGCTGCTTATGGGTAGTCATAGGAACCAGGTACACAAGATGCTAGCAGAGTTCCGTCTGATCCCAGGTCTCAACAACTTGTTTGACAAGCTAATCTGGAGGAAGTACACCTTATCCAATCATGTGGTGCATGGCCAGAATGAGAACTGTGATTGCAGTCCTGAAATATCCTTCAAGATCCAGTTTCTGAGGCTTCTCCAGAGCTTCAGCGACCACCATGAGAACAAGTACCTGCTTCTAAACAGTCAGGAGCTGAACGAGCTGAGTGCCATCTCTCTGAAGGCCAACATTCCAGAGGTGGAGGCGTTAGTCAATACAGACAGGAGTCTAGTGTGTGATGGGAAGAAAGGTCTCCTCACTCGTCTCCTCACTGTCATGAAGAAGGAGCCTCCAGACTCCTCCTTCAGGTTCTGGCAGGCCAGGGCAGTGGAGAGTTTCCTCCGTGGAGCCACCTCCTATGCAGACCAGATGTTTCTGCTGAAGAGGGGGCTTCTAGAAAACATGCTGTTCTGCATCATAGACAGTGGCTGTAAGTCCAAAGATGTCCTGCAGAGCTACTTCGACCTCCTGGGGGAACTCATGAAGTTCAACATCGACGCCTTCAAGAGGTTCAACATATACGTCAGCACAGATAACAAGTTCCAGACCTTCATGAGCCAGATCAACAGTTCCCTGATAGACTCCAACATGCTGGTGCGCTGCATCATTCTCTCCCTGGACCGCTTCGAGACCCAGACAGAGGACAGAAAAGTGGTGGAGGTGCTGTCTGAATGCTGTCTGCTGTCCTACTTGGCCAAGGTGGAGAACAGACTGTCTTTCCTCTTCAGGCTGGTCAACATCATCAACGTGCAGACTCTCACACAGGAGAATGTGAGCTGTCTGAACACCAGCCTAGTGGTCCTGATGCTGGCCAGGAGGAGGGGCAAGCTGCCCTTCTATCTCAAAGCCCTGAGAGGGAAGGAGCATGCAGAGAAGTACCCCGGCTGCCTGCTCAACAACTTCCACAACCTGCTGCGCTTCTGGCAGCGTCACTACCTCAACAGGGATAAGGACAGCACTTGTCTGGAGAACAGCTCCTGCATCCCCTTCAGCTACTGGAATGAGACCGTGTCAGTGCTGCTGCGCTCAGACAGGACTTCTCTGTGTGCCATAGCCAGCTACATAGATGAGCCCTTCATGGACATGGACCTGCTAGAGTGTTAACCCTAGGAGAGTTTGGGCTGGGCTTGTCGGGGGTTGCTGTGGTATGGACACCTATCATGGTTGATGACCCCGCCAAAGAGCATAGCCAGATCAAGGGTCATCCAGCGACCTGGAAGTGCTATGTGACTGCGGCAGGACACCAACTCGCTGCTATGCTGTCTGTAACTTGGCCAGGGGGCCATTACTGAAGATAATAAGGATGATTCTACAATGCTGGACATCTTCTCTCTATGCTCCTGTTCTCTTtgtaggagaagaagagaagactgCACCTGTCCCAGACCCCACAGTAAAGAAATATACATTTATTGGACCTTGAAATACTCCTTTGTTGGTGGTTTGCTTTAGGTGAAATCAAATGAAGCTTTTTTTATATATTACATAAATATATGGAAAAATCTATTTGTACGATGCAACaaaatagatatatacagtaccagtcagaagtttggacacacctactcattcaagggtttttctttacttaatagtgaagacatcaaaactatgaaataacacatatggaatcatgtagtaaccaaaaa

Function

GO: NA

KEGG:

id description
K11796 TRPC4AP; Trpc4-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1700530 lncRNA upstream 9884 74484274 ~ 74507789 (+) True G1487295
TU1700468 lncRNA upstream 85552 74431579 ~ 74432121 (+) True LOC110493252
TU1700491 lncRNA upstream 101264 74415825 ~ 74416409 (+) True G1487267
TU1700488 lncRNA upstream 105243 74412135 ~ 74412430 (+) True G1487264
TU1700375 lncRNA upstream 204237 74313283 ~ 74313436 (+) True LOC110493251
TU1700561 lncRNA downstream 16549 74546422 ~ 74555701 (+) False G1487325
TU1700562 lncRNA downstream 16549 74546422 ~ 74555701 (+) True G1487325
TU1700618 lncRNA downstream 112806 74642679 ~ 74643086 (+) True G1487372
TU1700584 lncRNA downstream 126805 74656678 ~ 74657334 (+) True G1487346
TU1700583 lncRNA downstream 127550 74657423 ~ 74657775 (+) True G1487345
XM_021567515.2 mRNA upstream 235 74510781 ~ 74517438 (+) True LOC110493253
XM_021569719.2 mRNA upstream 11999 74456019 ~ 74505674 (+) False LOC110494552
XM_036950646.1 mRNA downstream 87944 74617817 ~ 74622094 (+) False LOC110494557
XM_036950640.1 mRNA downstream 87987 74617860 ~ 74622094 (+) False LOC110494557
XM_036950641.1 mRNA downstream 87987 74617860 ~ 74622094 (+) False LOC110494557
XM_036950642.1 mRNA downstream 87987 74617860 ~ 74622094 (+) False LOC110494557
XM_036950643.1 mRNA downstream 87987 74617860 ~ 74622094 (+) False LOC110494557
TU1700469 other upstream 108484 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 538238 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1235654 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1392317 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1472085 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 2153726 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 3478417 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3488495 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3659139 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3659139 78189012 ~ 78190290 (+) False G1491963

Expression Profile