RNA id: TCONS_00046425


Basic Information

Item Value
RNA id TCONS_00046425
length 1857
RNA type mRNA
GC content 0.46
exon number 8
gene id XLOC_023469
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24701780 ~ 24724284 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGGCCAAATAAACCGGACCAGAACAGTTGGTCACACACAATTTTAACTTCGTTTACTGTCGTCCTCATATCCAGTCTGGTTTCCGTCAGCAGTTGATTTGTCGGTGGTTTTGGATCCAGCAACTGGACAGGAATCATCCGAAGCGAGGAGCGTCCTGGGCGTGTTTGCTCTTGGAGCGGTGTGTTTTCTGTGCATGGCCCTTGGAGTGGGAGCAGCATGAGCGGGGAGCCTGATGCCTTGGCTGTGGTGAATCAGCTGAGGGACTTAGCTGCCGACCCCCTCAACAGGAGAGTTATAGTTGAAGATCAGGGCTGCTTCTCCGGCCTCATCCTCTTTCTCGACCATCCCAATCCTCAAGTCGTCTACTCCGCACTCTTGGCGGTGCGTTACCTGGCAGAATGCCGTGCCAACCGGGAGAAGATGAAGGGCGAGCTGGGAATGATGCTGAGCCTGCAGAACGTCATGCAGAAAGGCACGTCTCCAGGAGAAACCAAGCTGCTGGCCTCTGAGATCTACGAGATCCTGCAGAACTCCAGCAGTGCAGAGGCTGAACAGGCAGAAGCCGGAGCCTCCTGTAGAAGAAAAGCCCAGTTCTTCCTGGGCGCAACCAACAAACGGGCCAAAACTGTGGTGCTTCAGATTGATGGGCTTGATGATTCGTCTCGGAGGAGTCTTTGTGAGGAGGCTCTGCTGAAGATTAAAGGAGTCATCAGTTTTACCTTTCAGATGGCCGTGAAGAGATGCGTGGTCAGAATCCGCTCAGACCTGAAGGCAGAGgcCTTGGGAACTGCTATAGCTTCAACCAAAGTCATGAAGGCACAGCAGGTTGTGAAAGGGGAAGATGGAGCAGAGCTTGTAATCCCATTCCAGGAAGACTCGGACGTGGTTGTGGAGCAGAATCTGAATTTGCCGGATTATCTGCCGACTGCCGAGTGCATCTCGCAATAAACTTACAGCCCTGTTCCAACTTCACAAAAAAACGCCACGAGCGGCGGCAGTAAACGGTACGCGATCAAAACCCGCTCCTGAAACCTGCGTTTAGCGCTGCATACAAACCACACCAGACACTAAAACCAGAGAGCAGCCGGGAGACGTTCACAGAAAGTATTTTGTGTCTATTTGCTCTCTCTCCTACTCAccgtattgtttgtttgtttggtcagGAGAAGGTTCTCGAACGATCTGGGTTTCCCCGCTGGGTCGATGTTTTCTAAATTTCTACGATTTTTTGGGGTGATTTCGGATGTGGTCTAACCCTTCATCTCAGCTTTCTTGTacattttatacaacattttcttttgatatcctaatattactttattaattcATCTTTTCAAAGCatgatgcctttttttttttttttttgagatccACTTTCCTTCTGTGTGTGCCTTTTATATATTACGTAGCTTGTTTTCTTGGTTTTAAATTCTCTTCATCTGCTTCGACTGAAGACATGAGTTTTAGGTTTGTAATGTGTTGATGGTTCAGGGAACTGATTCCGTATGATAAATCTTTCACACTCCAGCACTGGCTGGTGTgcagtaataatattaatttgataaatgaataaataacggTTTGATGCCTCCAGATAAGGGAGGCGAAAATGGAATAGCTGTTACTTTATGTGTGTAGTACTAACCTGTTTTTGTTACAGCATGTGCCAAACACCAGATAACCTTCTTCACACTGTAGAAAAAATGGCTTGAATCCTTTGGGAATTgatattgttagttttttttttgggcctttcttaaagtgatagttcacccttaaattaaaattgtgtttaatttacttaccctcagCTTAAGATGTATGCCACTTCAATAGAAAATCAATTGAGGATTTT

Function

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-041212-33 Predicted to enable metal ion binding activity. Predicted to act upstream of or within metal ion transport. Predicted to be located in mitochondrial outer membrane. Orthologous to human ARMC1 (armadillo repeat containing 1).

Ensembl:

ensembl_id ENSDART00000127044

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047197 lncRNA downstream 6023 24598134 ~ 24695757 (-) False XLOC_023468
TCONS_00047198 lncRNA downstream 6023 24640773 ~ 24695757 (-) False XLOC_023468
TCONS_00046865 lncRNA downstream 6096 24641280 ~ 24695684 (-) True XLOC_023468
TCONS_00046864 lncRNA downstream 10005 24597903 ~ 24691775 (-) False XLOC_023468
TCONS_00046863 lncRNA downstream 103305 24553793 ~ 24598475 (-) False XLOC_023468
TCONS_00047199 lncRNA upstream 76543 24800776 ~ 24828667 (-) False XLOC_023471
TCONS_00047200 lncRNA upstream 76543 24800776 ~ 24829401 (-) True XLOC_023471
TCONS_00046437 lncRNA upstream 252103 24976336 ~ 24982957 (-) True XLOC_023474
TCONS_00047201 lncRNA upstream 284084 25008317 ~ 25026099 (-) False XLOC_023476
TCONS_00046443 lncRNA upstream 299192 25023425 ~ 25026099 (-) True XLOC_023476
TCONS_00046420 mRNA downstream 419353 24273371 ~ 24282427 (-) False XLOC_023465
TCONS_00046421 mRNA downstream 419974 24273449 ~ 24281806 (-) False XLOC_023465
TCONS_00046422 mRNA downstream 419988 24276566 ~ 24281792 (-) True XLOC_023465
TCONS_00046419 mRNA downstream 430151 24183752 ~ 24271629 (-) True XLOC_023464
TCONS_00046416 mRNA downstream 533247 24164227 ~ 24168533 (-) False XLOC_023463
TCONS_00046427 mRNA upstream 9074 24733307 ~ 24797455 (-) False XLOC_023470
TCONS_00046428 mRNA upstream 19056 24743289 ~ 24796695 (-) False XLOC_023470
TCONS_00046429 mRNA upstream 19297 24743530 ~ 24796583 (-) True XLOC_023470
TCONS_00046430 mRNA upstream 123450 24847683 ~ 24849120 (-) False XLOC_023472
TCONS_00046431 mRNA upstream 123610 24847843 ~ 24849091 (-) False XLOC_023472
TCONS_00046414 other downstream 538670 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other downstream 554905 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046409 other downstream 583385 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046400 other downstream 724495 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046386 other downstream 1428421 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046441 other upstream 284084 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046479 other upstream 1635006 26359239 ~ 26362471 (-) False XLOC_023496
TCONS_00046480 other upstream 1637513 26361746 ~ 26368871 (-) True XLOC_023496
TCONS_00046487 other upstream 1750949 26475182 ~ 26479841 (-) False XLOC_023500
TCONS_00046496 other upstream 1784655 26508888 ~ 26534654 (-) False XLOC_023502

Expression Profile

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