RNA id: XM_036950642.1


Basic Information

Item Value
RNA id XM_036950642.1
length 2369
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110494557
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74617817 ~ 74622094 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGCAAGCAATGGAGAGCTCATAAAACTGTGTTATACTTTCTGTTCTTCTAGATTAGTAACATAGTGCAATTGTTTTTGTGTATCTCTACATTCTACTGCTCCAACACCTGTGTTGTACCTTTATTGTACAGCTTGTTTTCACCATGCTGACTTGCAGGTTTGCTAGTCATCAGATGGGAAGGGAGAGGGTAGTCCTGTGTCTGTCTAATTGTGGATCATGTGCTTATCTCTGTGTGAACATAGGGAAAATGGATGTGAGTCCTGAGACTAAACTTAGTAGCAGACAATCCCCAGTTGGTTACAAGAGCTTTGAGGGCTTACCTCAGTTGACTGTGGATGACACATTGACCAAAGGGCAAAACTTTCAGAATGAGCATAACCGAAACACAGGTCTCCATGGCCATGGTGGCCTCAGTTCTGCTCCAGACCTCAGCAGTCTCCCAAAAGAATTGCCCCTGAGACATCTAGCCTCTGGGAGCCAGCACCCTAACCTGGCGGATCTAAGCTTGTCCTCCTTTAGAGAGATGGATAAGGACCTGCCGCCTTGGGGGCCAAGTAGGTGTGGCACTTGGCAGGATGCCATCATACCCATCTATGCTGCTTCTCTCATCATTGCCATAGCAGTCACCACCGCTATGGTCCTGCAGATTTATCTAGGGACAAATGAGCAGGTCTTCAGAGGGAGTGTGTTGGTGACGGACCATGAACACTGTACAGAGCTTGGTCGTAGGGTGCTGAATGAACAAGGCTCCAGTGTGGATTCTGCCATTGTTGCCACCCTGTGCCTGGGGATAGTCCATCCACATGCGTCAGGTATTGGCGGGGGAGGGGTGATGCTGGTTCATGACATCCGGAAGAATATAAGGAAGGTGATTAATTTCCAGGAAACGGCACCCTCTGGAATCGAGGAGATCCTGCAAATTGACCCAGAGCTAAAGCCAGGTCTGATTGTAGGTGTGCCAGGCTTGCTCAGAGGGTTGTACCAAGCCCATAAACTGTATGGAAGACTGTCATGGGAGGATATTGTCACCAGGGCTGCCAACGTAGCCAGAGATGGCTTTAATGTCTCTCACAGACTTGAGGCCATAACCAAGGTGAAAGGTCAGAATATGTCATTGCGCTTCAGGGACATGTTCTTGCCAAGAGGCCATGCTCTGTCCCCCGGCTCTCTTATGAAAACACCAAGCCTGGCTGCTGTCCTGGAGGCTGGGGTGTCAGAATTCTACAATGGGACTCTAACACAGGAAATGGCCAGTGAGGTGCAAGAAAATGGAGGAATTCTAACCAAGGAGGATCTCAGCAACTACAGTGCAGTCATATCGCAGCCAATTGAAGGCCTGTATCAGGCCTCCTCAGGTCTACACAATATTTCCTGGCAACACCCTCCCTCAGGATTCCGAGTTCTCGTGCCGCCTCCCCCTTCTATTGGTGCTGCTCTGATCTCAGCCCTCAACATTTTGGAGGACTTCCACCTCAATGGGAATAGTACAACGAATAGAGCAAACCACTGGATTGCTGAGTCACTGAAAGCGTCCCTGACTATGGCTAGTGGGCTCGGAGACCCTGCGTATACCCCATCAGTTTCTGCACTCCTCTCCAAGATGCAAAGCAAGCCACAGGCTGTAGTGCTCCGTCAGTTGATCAGTGACTCGCAGGCATCTCCTCCCAGACACTACTCTACTGTCTATGACCTGCCGAGGGGAGCTGTGGCCAGCCAGGTGGTCGTGATGGGTCCCGATGACGTCATTGTGTCTGTCACCAGCTCACTGAACAGGCCCTTTGGAAGTAGAATTTTAACCCCTTCAGGCATTCTCCTGAACAGCCAGATCTTGGACTTCTCCTGGCCAATTAGAACCCAGGGACTGTTAATATCTAACCTGACGAACAGGGTCCAGCCAGGCAAGCGACCTCTGTCATTTATTATGCCAACAATTGTGATACCGTCTCTAGGTAAATGTGGATCCTATGTGGCCCTGGGATCTTCTAATGGAGAGTCCAGCCTCAGTGGTGTCACCCAGGTCTTGATTAATATTTTATCATATAACAAAAATCTGAATGATAGCATATCACTGGGACGACTCCATCCCCAACTTAAGCCGAGCAGACTCCTGGTGGACTCTGAGTTCCTGGAGGAGGATGTGAAGGTGTTGCGTTTGAAAGGACACACTGTCTACAGGGTGGGGCTGCTGTCCCTGGTGCAGGGTGCCCAGAAAACCAACGACATCATTAGGGGCATTGTTGACCCTCGTGCTGTGGCTGGCTCTGCCTAGCTTTCTGAGAATATGGCTTTATTTCAATGTGAACATAAGAAGATTAAGTAATATTTGAGTTGTATGTTTATTAAAAAATGAAAGTATTACAATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1700561 lncRNA upstream 62159 74546422 ~ 74555701 (+) False G1487325
TU1700562 lncRNA upstream 62159 74546422 ~ 74555701 (+) True G1487325
TU1700530 lncRNA upstream 110071 74484274 ~ 74507789 (+) True G1487295
TU1700468 lncRNA upstream 185739 74431579 ~ 74432121 (+) True LOC110493252
TU1700491 lncRNA upstream 201451 74415825 ~ 74416409 (+) True G1487267
TU1700618 lncRNA downstream 20585 74642679 ~ 74643086 (+) True G1487372
TU1700584 lncRNA downstream 34584 74656678 ~ 74657334 (+) True G1487346
TU1700583 lncRNA downstream 35329 74657423 ~ 74657775 (+) True G1487345
TU1700621 lncRNA downstream 38397 74660491 ~ 74660795 (+) True G1487375
TU1700623 lncRNA downstream 44666 74666760 ~ 74667072 (+) True G1487377
XM_021569723.2 mRNA upstream 87987 74517673 ~ 74529873 (+) False LOC110494553
XM_021569724.2 mRNA upstream 87987 74517673 ~ 74529873 (+) True LOC110494553
XM_021567515.2 mRNA upstream 100422 74510781 ~ 74517438 (+) True LOC110493253
XM_036950638.1 mRNA upstream 112186 74459417 ~ 74505674 (+) False LOC110494552
XM_021569730.2 mRNA downstream 3891 74625985 ~ 74635714 (+) False LOC110494558
XM_021569729.2 mRNA downstream 3901 74625995 ~ 74635714 (+) True LOC110494558
XM_021569735.2 mRNA downstream 22084 74644178 ~ 74656005 (+) False LOC110494561
XR_005037080.1 mRNA downstream 22107 74644201 ~ 74654874 (+) False LOC110494561
XM_021569734.2 mRNA downstream 22107 74644201 ~ 74656005 (+) True LOC110494561
TU1700469 other upstream 208671 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 638425 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1335841 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1492504 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1572272 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 2061505 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 3386196 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3396274 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3566918 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3566918 78189012 ~ 78190290 (+) False G1491963

Expression Profile