RNA id: XM_021569734.2


Basic Information

Item Value
RNA id XM_021569734.2
length 3689
RNA type mRNA
GC content 0.45
exon number 22
gene id LOC110494561
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74644178 ~ 74656005 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTACACAACTGTTTCTTTCTTCATTCTGCTCGCATCACCTCGTCGGCGGTTTCCTCCAACACGTTTCACACTTTGCTTTTAACAGATTAATAATTGAAAATGAGTGGAGATCATTCCCACAACGATAGCCAGATAGACTCCAGCTCTCGGGTCAATGCGGTCTGACTAGGAAACATAGCTGAAGTGCAGATGGCTGTGATATGGAGGGGAAACACGCAGGACCGTTTGTATCAAGACACGATTTCCAGCGGCGGAGGAAATTCTCATAAGCATAAAGATAAGTACAAGGATAAAGAACACAAACACAAGGACCACAAGAAGGACAGGGAGCGTGAGAAATCAAAATATGGCAACAGTGACCATAAGGAGTTCTCGGAAAAGAAACACAGAGAAAAGGAGCGAATAAAGCACGAAGATGtcagcacagacagacacaaggaCAAACACAAGGAAAAAGACCACAGGAAGGATGAGATCAAGCCGAAGAAGGAAAAAGAGAATGGCTTTGCCAGCCCTCATCGCATTAAGACGGAGCCGGACAATGATCACTTCTACCATTCTCCCAAGTCCCTGAAAAGACAGCGTGACAATGACGAaactGAATTCAAgcccaaaaaaataaaaattgaaaaTGACAGAGTGGACAAGAAAGCAAAGAAGAGGAAACAAGATGAGGACATCAAGCCCAAAAAGACACAAAAAAACAAGAAAGGGGAAGTTGCTGACGGGAAAAAGAAAGCAAAGAAGGAGCCTGAGGAGAAGTGGAAATGgtgggaagaggagagggcaaCTGACGGTTCCAAATGGAGGTTTCTGGAACATAAAGGCCCAGTCATGGCAGCACCTTACGAACCTCTTCccagcaaagtcagatttttctaTGATGGGAAGCAGATGAAGCTCGGCCCAGAAGCTGAGGAGGTGGCCACCTTCTTTGCCAAAATGCTGGACCATGAGTACACTACCAAGGATGCCTTCCGGAAAAACTTCTTCAAAGACTGGAGAAAGGAAATGACCTCGGAGGAGAAGTCTAAGATCACAGACCTGAAGAAGTGTAACTTCAATGAAATGGGGGAATACTTCAAGGCTCAGTCTGAGGCCAGAAAGGCCATGACTAAAGATGATAAACTGAAAATCAAAGTGGAGAACGAACGCCTCCTACAGGAGTATGGCTTCTGCATCATGGACAATCACAAGGAGCGCATTGCTAACTTTCGCATTGAGCCCCCGGGCCTGTTCCGTGGCCGAGGAGACCACCCCAAGATGGGCATGCTGAAACGCCGCATCCGCCCTGAGGACATCATCATAAACTGCAGCAAggaCTCCAAGCACCCCAAGCCTCCCCCTGGTACCAAATGGAAGGAGTTGCGTCATGACAACAAGGTGACCTGGCTGGTGTCGTGGACAGAGAACATCCAAGGCTCTATCAAGTATATCATGCTGAATCCCAGCTCAAGAATCAAGGGAGAGAAGGACTGGCAGAAGTATGAGACAGCCCGAAATCTGAAGAAGTGTGTGGACCGGTTAAGGAACCAGTACCGCGAGGACTGGAAGTCCAAAGAGATGAGGATCCGACAGAGAGCCGTGGCACTCTACTTCATCGATAAGCTGGCTCTGAGAGCAGGTAAtgagaaggaggaaggggagtCTGCGGACACAGTGGGCTGCTGCTCCCTCCGAGTGGAACACATCAACCTGTACCCCGAGAAGGACGGCCAGGAGTTTGTGGTGGAGTTTGACTTCCTGGGTAAAGACTCCATCCGCTACTACAACAAAGTCCCCGTGGAGAAGAGGGTATTCAAGAACCTGCAGCTGTTCATGGAAAACAAGCAGCCAGAGGATGACCTCTTTGACCGGCTCAATACCTCCATTCTGAACAAGCACCTTCAGGAGCTGATGGACGGGCTGACGGCCAAAGTGTTTCGTACCTACAACGCCTCCATCACTCTGCAGCAGCAGCTGAAGGAGCTCACCAGCCCGGATGAGAACCTTCCAGCCAAGATCCTGTCATACAACAGGGCCAACAGAGCTGTGGCCATCCTGTGTAACCATCAGAGGGCACCGCCCAAGACCTTTGAGAAGTCAATGCAGAACCTCCAGACTAAAATTGACGCAAAGAAGGACCAGCTATCTGACGCAAAGAGGGATGTGAAGAGCGCCAAGGCTGACCTCAAAGTACGGAGAGACGAGAAGTCCAAAAAAGCTGTGGAGACCAAGAAGAAGGCTGTGGAGAGGCTAGAAGAGCAGCTGATGAAGCTAGAGGTGCAGGCGACGGACCGCGAGGAGAACAAGCAGATTGCTCTGGGCACCTCCAAACTCAACTACTTGGATCCACGCATCTCTGTGGCCTGGTGCAAGAAGTGGGGTATCCCTATCGAGAAGATCTACAACAAAACTCAGCGTGAAAAGTTTGCCTGGGCTATCGACATGGCAGAGGATGACTATGAATTTTAAATCCTGTTTGCGGTTTTATAATTGTGATTTCTATTGTAATTTTATTGGATACTTGTTTTTAGCTTAACCGATTATACAGAATGGCCAGCCTGACAAGGAAATTATAGAATGAGTGTACACTCAACAAGCATGGTGAGGTTGAATGTCAGGGGTCAGGACGTATAGGCCATTACAGATGAGCTGGAGGGAGGGGGGACGAGGTGGGTTAGTCTGAGGTCTGGTCGGATGCCAGGTTCAAGGGCAGAACTATACCCATACCCAAAGGTGACGCGGTAATCTCTGATTGGATGAGAACCAGTGGATTGCCTTTTTTGCCTTTTGGCTCTCTTCCTCTTCAGCCACATGCACGACTTAAAGGTGTCTGAACTTTGAACTCTGGGGTCCTATTGCTACTGTATTCAACAAAAAATGACTGCTTTGTGTATtagattttattatttttttgttcacTTGGTCTGTATTTTTAGCCCTCCCATGTATTATTAATGGATTCTATATTTTAATAGAGAACAGTTAAATCAAATGAAATCCTGAAGTACACCCATGCGCCTTTTTGAGGAAATTAAATGTGATCTCTAGGTATGAGTTGTAGGGGGGATAAAGACCATGAAAGCTGTGTTTTGGTGAGTGTGATGTTTTAAACTGGACTATGTTGATTGTGTACCATAAAGAGGATGCATTGACACGGATAGGGGAAAATGCTACACCCATGTCAATATTTACATAAGCAGGCAGGATGTGATTTAATTTGTTTTACAGTATCTATCAGGGACTGATTTTCAATGTGAACCAATCATTTAATTTTTCTCCCCTTGCCAGCATCCTCTGGATCTTTCTGCATAGTCTATCTGGTTTTAACTTTATAATTTCTAATGATTGTTTGAGTGGAAAACAACTCCCTTATCTGTTACttgaaaaaaaaagaagctattTTAAAATGTAGTAATTGAAAATATTTTTCAATTAGGGATATCAACTTTGCCAAAAAAAAAAACCAATCTGTTACAGTTTAGGcagttatttttttaattgtgTTAAAGACGGAGGATGAAGAACATTAACAGGAGTTTCAATGTGAATTTTATTCCACTCTAGTGTCAGAGGAAAGTTGGTGTTTATAGCGGTAAGCTCAACTTCCTTTTCCTGTTTTTCAACCTCTTCTGTCATAGCCTCCAATCATGTTCTTGTTTTATGCTCATTGTAGGTTGAAAATGAATAAAACCCCTCAACTCCA

Function

GO: NA

KEGG:

id description
K03163 TOP1; DNA topoisomerase I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1700618 lncRNA upstream 1115 74642679 ~ 74643086 (+) True G1487372
TU1700561 lncRNA upstream 88500 74546422 ~ 74555701 (+) False G1487325
TU1700562 lncRNA upstream 88500 74546422 ~ 74555701 (+) True G1487325
TU1700530 lncRNA upstream 136412 74484274 ~ 74507789 (+) True G1487295
TU1700468 lncRNA upstream 212080 74431579 ~ 74432121 (+) True LOC110493252
TU1700584 lncRNA downstream 673 74656678 ~ 74657334 (+) True G1487346
TU1700583 lncRNA downstream 1418 74657423 ~ 74657775 (+) True G1487345
TU1700621 lncRNA downstream 4486 74660491 ~ 74660795 (+) True G1487375
TU1700623 lncRNA downstream 10755 74666760 ~ 74667072 (+) True G1487377
TU1700625 lncRNA downstream 12710 74668715 ~ 74669020 (+) True G1487379
XM_021569730.2 mRNA upstream 8487 74625985 ~ 74635714 (+) False LOC110494558
XM_021569729.2 mRNA upstream 8487 74625995 ~ 74635714 (+) True LOC110494558
XM_036950644.1 mRNA upstream 22107 74617860 ~ 74622094 (+) False LOC110494557
XM_021569737.2 mRNA downstream 19485 74675490 ~ 74681473 (+) True LOC110494562
XM_021569740.2 mRNA downstream 80216 74736221 ~ 74741481 (+) False adnpa
XM_021569741.2 mRNA downstream 80230 74736235 ~ 74741481 (+) False adnpa
XM_036950648.1 mRNA downstream 80241 74736246 ~ 74741481 (+) True adnpa
XM_021569743.2 mRNA downstream 90182 74746187 ~ 74749119 (+) False LOC110494565
TU1700469 other upstream 235012 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 664766 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1362182 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1518845 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1598613 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 2027594 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 3352285 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3362363 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3533007 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3533007 78189012 ~ 78190290 (+) False G1491963

Expression Profile