RNA id: XM_021569737.2


Basic Information

Item Value
RNA id XM_021569737.2
length 3239
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110494562
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74675490 ~ 74681473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTTTGTTTGCCTCCAAATTCAAACTGCTGGCCAATGAGCGAGCGCTTATAGCGGAGTGACAGGTGTATAGCGCAGGCTTGTCTACACGATTCTGGTTCCTAATTTTCGAGTAGCCAATACTGACTGCGGATGGGCTGGAACTGAGTAAATTGCAAAATACAAATTTGCTTCTTCTGGTTAGGCTACATTATATCACGAGGGACACTGAATTGAATGGTTACTGTCTATTCTAAATAGTTAACTTAACGTTATGGCTCTATCGCAATGTTTGGAAGATTCACCTGTAAGGTGGCCGTCAAGAAGACAGGAAAATGATTTGAATGTAAAGGAGTTATACAACGAAAGGCACCGACTGGCGTTAGAGGAACTTATTTCAGGTGGAGTTGATTCGTTTTTGGGATTTCTAAGAAAAGAGAGAATACCGAACTTTCTCTCGGATGACGAGATCAGACGCATTGGCCGTGCTGCGGTGGTTCCACGCGGTGTGTCCCTCCACGCGGAGGACGTGATTTTTGAACAGTCGGTAAGCAGCTCCATGGACTGCTCCTCGGTCACTTACTTCCCCGAGGTCTCGGACGTGGAGCCACCGCTGTTGGAAATCGGCTGGCCCGCCTTTACATCGGGCTCTTACCGAGGAGTCACTCGTGCTGTCGCCCACTTCCAACCCAGTTATGGAGAATGCATCTATAGTTGCAAGGAAGCTGCGAGAAGAATGATTCAAAGTGCCAAGGAGGTGATCGCCATAGTGACAGACTCTCTGACAGACCTGGACATCTTTAAGGATCTCCAGGAGGCGTGCACACAGCGCAGAGTTCCAGTCTACATCCTGCTGGACTGGTCCTGTGTGCCGGCATTCCTCAAAATGTGCAACAACATCAATGTGCGCCTGGACGATCTTAAGCAAATGCGAGTGCGGACCATAACTGGTGGTACATACTTCATGCGGTCAGGGGCCAAGATTACTGGGAAGGTTCATGAACGGTTCATGTTGATTGATGGGAACAGAGTGACTACAGGCTCCTACAGGTTCAATTGGACTGATGGGAAACTAAACAGCAGCAACATGATCGAGTTGTCTGGCCAGATCACTGAGAACTTTGATGAGGAGTTCCGGATTCTGTACGCTCAGTCCATGCCTGTTATTACCAGGGGCCCAGCCAGTGCCCGAAACAGTGGCATCTACGACCACCTTCTCATCAAACACCCCGTCACCTCATCCCCTCAGCCGTGCAAAGAGAGGCCCCCAGtcaagcctgtctgtctggaAGTATTGGGGAAAACTGTCTGTCTGACCAGCACACCCAGCCGGGCCCAGGCTGTGGCAGTGCCGCCCTCCAGAGAAATGACTGGGAAGAGCAGCCCGGTGTCGGCCTCCTCCACCATAGGGGAAGACTGGATGGAGCAGCGACACATGCAGGAGGTCCTGGCTGGAAGTGCCGCCCAGTGCCTGCCCACAGGTGACCCTGCCACTGCCACATCAGCAGTGGATGTGCAGGTCACACCCTCCGTCCCTACCTGCTGTCATGTCTCCACCCAGACCAGCTGCCCTGCGGTGGACCTTGGAGTGCAGACTGATCTGACTCAGTACACTAAGCACCTCTCCCCCAACAAGGCTACATTTACTCCAATTACCAGCACCACGACTCAGACCAACAACATTCAGAGTGAAGCTGCCGCCTCCTCAGattctgtctctacctcccccagGCAGCACCTCGCCCCCCATGGGGTGGACCGTCGCCCTGCAATCCGTCACTGTACTCCACCCCCTGATGGGAACCTGAGGGAGTGCTTCCGCAAGCTGACCAAAGAGCGTCAGTATCACTACTCCACCATCCGCTCCAAGCTGGAGCACATGGTGACCATGCTGTCCCACCGCCGTGAGCTGGTGGACCTCACCAACATGGCCCTGGGGCCTGGGCTGCACAGAGCATCCAATGCCCAGAAAGAGCGGAGACAGAGGCAGGGACATAACCCTGGCCTGCTGATGGACAGTGTGGGCATGGGCACATGGCCAAGGGCTAGATGTTTACACTAACAGGACTTACAGGGCTGCAGGGGCTTGAAGGTGGAGGGTGTTGTAGAAACCGCTCTGTGTTTTGTAGGTATACACTACTTGAAACAAATGGGTTTAAAGAGCAATATGACATTTGAGAATTAGTCTTCCTTAGAGTTTAGAATTTGAAAGTATGTGtcactgtgtctgtgttgtgatgTAGCCTTCTTCCTATTTTTATTGTGAATCTGTCCCTTTTCTTTGACCCCTGTTTGAACATTTCTACTTTAGAAACTGATGTCAAATGGCAGTAGACAGGCGATGGATATACTGTAATTTGCCTTGACTATTTTTGCTacaaaatgtaatgtttttaagTGTAGACATTGTGCAGTAAGACACAATCTATATATAGTtttgatgatttaaaaaaatatatattgaaacaATAAGATTGTCCAAAGATTTATTTGAGAAATACTGTAATTGCAATTCATAAATTGATATTTGATGAACATTTTAGATGAGACATTTTGTCTGTAACTAACATTTTATTATACAGCATTCTAACATTCAGTTTAACTTGTTAGGTTCCAATTttgagtaaataactcacggacactagagaagcttaaccaagttgaATTCTTCCCAAAGAGTCgttacagctgtaattcagacaaaCTCTTTTCACACAAGCAcggatatttaaccctttctcctaggctgagtctccttTGCAActgaacagccaatgcatctctgttgTTAGACAGAACtttagtgatatctgttcttcctcacttcatctaacctgacctctaccccaaagtgctcactcctccccaactccaAGGCTGTCATGGTTATTGATACCAGACGGTGTCTCTTCTCCACCCAGAGGATCCCTGATGGCTAAAAATAACATGTCCTGACATAATTATACATCACCCTCTTTTCCTCAGTGACATTGTTAGGTTCTAAGCTCTCCACCCGTCTCCCCTACACATTCCCAAAGCCATCTAACTCCTACAGAAATCCATTCACTTCTGATGTAAAAACCAGTCTATATCATCTCTCAGATACCATACTTCTGATCTATCATGTCTAGTATAGCAATGTTAAAAGTTTACCCAGAATCGAACAAACTAAATCTGAGTACTGCGAAAGCAGTTACGTGTTATTATATCAATGTATGTACTTTATTGCTTACACTTAAAATAAAGGAGTATTTTACGTAT

Function

GO: NA

KEGG:

id description
K16805 FAM83D, CHICA; protein FAM83D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1700626 lncRNA upstream 6002 74669289 ~ 74669488 (+) True G1487380
TU1700625 lncRNA upstream 6470 74668715 ~ 74669020 (+) True G1487379
TU1700623 lncRNA upstream 8418 74666760 ~ 74667072 (+) True G1487377
TU1700621 lncRNA upstream 14695 74660491 ~ 74660795 (+) True G1487375
TU1700583 lncRNA upstream 17715 74657423 ~ 74657775 (+) True G1487345
TU1700640 lncRNA downstream 11465 74692938 ~ 74693142 (+) True G1487394
TU1700655 lncRNA downstream 31774 74713247 ~ 74715641 (+) False G1487407
TU1700656 lncRNA downstream 32179 74713652 ~ 74715641 (+) True G1487407
TU1700660 lncRNA downstream 38450 74719923 ~ 74720488 (+) True G1487411
TU1700661 lncRNA downstream 39072 74720545 ~ 74721117 (+) True G1487412
XM_021569735.2 mRNA upstream 19485 74644178 ~ 74656005 (+) False LOC110494561
XM_021569734.2 mRNA upstream 19485 74644201 ~ 74656005 (+) True LOC110494561
XR_005037080.1 mRNA upstream 20616 74644201 ~ 74654874 (+) False LOC110494561
XM_021569730.2 mRNA upstream 39776 74625985 ~ 74635714 (+) False LOC110494558
XM_021569729.2 mRNA upstream 39776 74625995 ~ 74635714 (+) True LOC110494558
XM_021569740.2 mRNA downstream 54748 74736221 ~ 74741481 (+) False adnpa
XM_021569741.2 mRNA downstream 54762 74736235 ~ 74741481 (+) False adnpa
XM_036950648.1 mRNA downstream 54773 74736246 ~ 74741481 (+) True adnpa
XM_021569743.2 mRNA downstream 64714 74746187 ~ 74749119 (+) False LOC110494565
XM_021569744.2 mRNA downstream 64959 74746432 ~ 74749119 (+) True LOC110494565
TU1700469 other upstream 266301 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 696055 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1393471 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1550134 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1629902 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 2002126 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 3326817 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3336895 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3507539 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3507539 78189012 ~ 78190290 (+) False G1491963

Expression Profile