RNA id: XM_021569743.2


Basic Information

Item Value
RNA id XM_021569743.2
length 1975
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110494565
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74746187 ~ 74749119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTTTGATTGGTGATTCATTTTGTTAGAAGGCGGAACATCCGATCTACGTGACAAAACTGGCCAATGGCATTATTGGCCTTCTCTCCGCTCCAATTCGCTTGAAATATGTCGTTATTTTAAATGCTTTTATGCACAAAAATGGAATTTACCTTTTAAAAAATCGATACTTATTTATTGAACGGTACTTGAGTCTTATTTGCAATTggTATGATAACTTGTTGCAGCCCAGAGGAAACTGCCAGACAGCAAGCCTTTATTCCAGACATCTCAGTTAGTGTGAGGTATGGCAGAAGAGCCCTGGGAATCCAAATAGAGTGAAAAGTCAATGGCTAAAGAGGGTGCATAGAAGGTGGAAAAGATGTCTTACAGTAACAGGGAACTGGTGGTGTTTTTTATAAGCTATAGACTGTCCCAGAGGAATTATTCATGTTGTCAATTGGGGCTGGAGGGTGCAAGTGGACGGACTGACGGAGATGAGGCCATTGCAAATGGGTCTGTGGGGAACTACCGGAACAGCAGAAGCAATTTGGCGAAGCCCTCATCTCCACAGGGGGGCATGGAGCCAGTGAAAGCAGCACTACGGGACTCAGTGGATGAGTTTGAGCTACGCTACACCCGTGCCTTCAGTGACCTCTCCTCCCAgctccacatcacccctgccaCAGCCTACCACAGCTTTGAGAGTGTGATGGACGAAGTGTTCAGGGACGGGGTCAACTGGGGTCGCGTGGTGGGTCTGTTTGCTTTCGGCGGGGCCTTGTGTGTTGAGTGTGTTGAGAAGGATATGAGCCCGCTGGTGGCGCGCATCGCAGATTGGATGACCACCTATCTGGACAACCATATCCAGCCCTGGATCCAGAGCCAAGGCGGATGGGACCGTTTTGCAGAGATCTTTGGCAGAGATGCTGCTGCAGACGTTCGACGGTCCCAGGAGAGCATAATTAAATGGCTGCTAGTTGGGGTGATTCTGCTTTCAGGAGTGCTGGTCGGCACTCTCATCATGAAGAAACGCCAATGAAGTGGTGTAATATGAGCCACATCTAGTTTACCCCCAGCACATATAAACACAAaatcaacaaaaatataacttttataGTTTGTTTACATAAGCACAGTCTGCTTGTGCACTGACAGAAACCTTATGATTAGCCATGGCTATAACAGTTTTTGGGCAATGAATATGTAGCTTGGTGAGATGTCTCACAACTCACCTCTCCTGTCCTGCACTCTGTaacatttgtttttacatttgaAAAGTAATatgtaaaataacattttatgacATTATTTTCTTACTTTTATAATTATTATtggttttatttttaaaaaacttgGGTAGAGGGTGTTGCATTTGAGACTGGAGGTGCTTTAAATGGACCTGAAGCTATGCGTGAATGGGAAAACTACAGCTGGTGTGGTAGGACATAGGagattgtttatgtatttttagGTTTGTGTGTTACCCTTTACAGGGTTTTTTATTTTTAGGTTTGTGTGTTACCCTAGTACCAACTAAATACATTCTTTCCAAATTGACATTTGACCAATTACATTGAAgaatattgtttttttattttgtgttaaaGGCCCAATGCTGCTGTTTTTATCTTCATATGTAATCATTTCGGTgcaacaattaagtaccttactgtgatttcaATGAAAAtggtaatttttttaaatttattttttactcCCTTAGCAAGGGAATTTCAGCTAGGACTCTGGTTGTGGTCTTAGTAGGGAGGGGTAACAGCTCTTGCAAAatgggcattatcatcattttcacagtaTTCTACCAACCTCTtagtgaaaatatatataaaacatagtAATATCATGTTTTttactgcattgggcctttaactgAAACCTTTAGTTTCAATGTGACAATTTCTTTAAAATGTTACGTTCTTTCCTTGCTGTACTGGAGTTTCAGGCATGCactaaataataaaacatttatgtTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1700672 lncRNA upstream 2378 74743590 ~ 74743809 (+) True G1487423
TU1700668 lncRNA upstream 16812 74729141 ~ 74729375 (+) True G1487419
TU1700661 lncRNA upstream 25070 74720545 ~ 74721117 (+) True G1487412
TU1700660 lncRNA upstream 25699 74719923 ~ 74720488 (+) True G1487411
TU1700655 lncRNA upstream 30546 74713247 ~ 74715641 (+) False G1487407
TU1700932 lncRNA downstream 2799 74751918 ~ 74752128 (+) True G1487639
TU1700934 lncRNA downstream 3640 74752759 ~ 74763619 (+) True G1487640
TU1700939 lncRNA downstream 23442 74772561 ~ 74772783 (+) True G1487644
TU1700945 lncRNA downstream 37939 74787058 ~ 74787346 (+) True G1487650
TU1701100 lncRNA downstream 122501 74871620 ~ 74871843 (+) True G1487771
XM_021569740.2 mRNA upstream 4706 74736221 ~ 74741481 (+) False adnpa
XM_021569741.2 mRNA upstream 4706 74736235 ~ 74741481 (+) False adnpa
XM_036950648.1 mRNA upstream 4706 74736246 ~ 74741481 (+) True adnpa
XM_021569737.2 mRNA upstream 64714 74675490 ~ 74681473 (+) True LOC110494562
XM_021569735.2 mRNA upstream 90182 74644178 ~ 74656005 (+) False LOC110494561
XR_005036708.1 mRNA downstream 19513 74768632 ~ 74770253 (+) True LOC118940106
NM_001124322.2 mRNA downstream 90429 74839548 ~ 74842075 (+) True opn1sw2
XM_021567517.2 mRNA downstream 105007 74854126 ~ 74858312 (+) True LOC110493256
NM_001124320.1 mRNA downstream 109795 74858914 ~ 74861767 (+) True LOC100135982
XM_021569748.2 mRNA downstream 128074 74877193 ~ 74895463 (+) True gnl3l
TU1700469 other upstream 336998 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 766752 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1464168 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1620831 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1700599 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 1934480 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 3259171 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3269249 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3439893 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3439893 78189012 ~ 78190290 (+) False G1491963

Expression Profile