RNA id: TCONS_00046428


Basic Information

Item Value
RNA id TCONS_00046428
length 581
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_023470
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24733307 ~ 24797455 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGTGCTTTTTGAGAGTTGCAAACGGCGCTCAAGTTCCTTGCAAGTTCTCCTCTCCACCTTCTTTTGATTCCTATGGTTATTTTACTACTTTTCCTTCAGCGGCTTTGAATTATTTTCGATCCGGATCGATAGCGTTGATAATATTCAATGGAATTATGTTATCAGTTACCGGTTTTGCCTCTAGACAGGCCGGTTCCCAAACATGTTCTCAGCCGAAGGGGAGCCATTAGTTTCAGCTCCAGTTCCTCTTTATTTGGAGCCCCCGACCCGAGGCAGCTGTCACAGAGACGTGGAGCAATCTCCTATGACAGCTCTGATCAAACCGCTCTGTATATTCGCATGCTAGcacgTGCTGAGTCAGCAGGGTCGATTCCAGCTCGGAGGATCCGGAGGCTCTTCAGTTTCCAGCGACACCTGCTCTCGTCCCGTCTGCTGAGAGGAGCGCCACACCTCAACCCCCTCCACATCCTGGATGAGGACTACTGCGGTCAGGCCAAGTGTATGCTTGAAAAGGTTGGAAGCTGGAATTTTGACATTTTCCTCTTTGACCGACTTACAAATGGTAAATATTTTGATTCTC

Function

GO:

id name namespace
GO:0019933 cAMP-mediated signaling biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0004115 3',5'-cyclic-AMP phosphodiesterase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031222-10 Predicted to enable 3',5'-cyclic-AMP phosphodiesterase activity. Predicted to be involved in cAMP-mediated signaling. Is expressed in several structures, including intermediate cell mass of mesoderm; mesoderm; neural crest; notochord; and tail bud. Orthologous to human PDE7A (phosphodiesterase 7A).

Ensembl:

ensembl_id ENSDART00000146570

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047197 lncRNA downstream 47532 24598134 ~ 24695757 (-) False XLOC_023468
TCONS_00047198 lncRNA downstream 47532 24640773 ~ 24695757 (-) False XLOC_023468
TCONS_00046865 lncRNA downstream 47605 24641280 ~ 24695684 (-) True XLOC_023468
TCONS_00046864 lncRNA downstream 51514 24597903 ~ 24691775 (-) False XLOC_023468
TCONS_00046863 lncRNA downstream 144814 24553793 ~ 24598475 (-) False XLOC_023468
TCONS_00047199 lncRNA upstream 4081 24800776 ~ 24828667 (-) False XLOC_023471
TCONS_00047200 lncRNA upstream 4081 24800776 ~ 24829401 (-) True XLOC_023471
TCONS_00046437 lncRNA upstream 179641 24976336 ~ 24982957 (-) True XLOC_023474
TCONS_00047201 lncRNA upstream 211622 25008317 ~ 25026099 (-) False XLOC_023476
TCONS_00046443 lncRNA upstream 226730 25023425 ~ 25026099 (-) True XLOC_023476
TCONS_00046426 mRNA downstream 19005 24702020 ~ 24724284 (-) True XLOC_023469
TCONS_00046425 mRNA downstream 19056 24701780 ~ 24724233 (-) False XLOC_023469
TCONS_00046420 mRNA downstream 460862 24273371 ~ 24282427 (-) False XLOC_023465
TCONS_00046430 mRNA upstream 50988 24847683 ~ 24849120 (-) False XLOC_023472
TCONS_00046431 mRNA upstream 51148 24847843 ~ 24849091 (-) False XLOC_023472
TCONS_00046432 mRNA upstream 51393 24848088 ~ 24848612 (-) False XLOC_023472
TCONS_00046433 mRNA upstream 51616 24848311 ~ 24881996 (-) True XLOC_023472
TCONS_00046434 mRNA upstream 147657 24944352 ~ 24959607 (-) False XLOC_023473
TCONS_00046414 other downstream 580179 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other downstream 596414 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046409 other downstream 624894 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046400 other downstream 766004 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046386 other downstream 1469930 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046441 other upstream 211622 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046479 other upstream 1562544 26359239 ~ 26362471 (-) False XLOC_023496
TCONS_00046480 other upstream 1565051 26361746 ~ 26368871 (-) True XLOC_023496
TCONS_00046487 other upstream 1678487 26475182 ~ 26479841 (-) False XLOC_023500
TCONS_00046496 other upstream 1712193 26508888 ~ 26534654 (-) False XLOC_023502

Expression Profile

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