Gene
RNA
| Item | Value |
|---|---|
| RNA id | NM_001124322.2 |
| length | 1437 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 5 |
| gene id | opn1sw2 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 74839548 ~ 74842075 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0007602 | phototransduction | biological_process |
| GO:0018298 | protein-chromophore linkage | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0009881 | photoreceptor activity | molecular_function |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1700945 | lncRNA | upstream | 52202 | 74787058 ~ 74787346 (+) | True | G1487650 |
| TU1700939 | lncRNA | upstream | 66765 | 74772561 ~ 74772783 (+) | True | G1487644 |
| TU1700934 | lncRNA | upstream | 75929 | 74752759 ~ 74763619 (+) | True | G1487640 |
| TU1700932 | lncRNA | upstream | 87420 | 74751918 ~ 74752128 (+) | True | G1487639 |
| TU1700672 | lncRNA | upstream | 95739 | 74743590 ~ 74743809 (+) | True | G1487423 |
| TU1701100 | lncRNA | downstream | 29545 | 74871620 ~ 74871843 (+) | True | G1487771 |
| TU1701107 | lncRNA | downstream | 33107 | 74875182 ~ 74875389 (+) | True | G1487778 |
| TU1701119 | lncRNA | downstream | 57358 | 74899433 ~ 74899684 (+) | True | G1487790 |
| TU1701139 | lncRNA | downstream | 87607 | 74929682 ~ 74929897 (+) | True | G1487809 |
| TU1701143 | lncRNA | downstream | 102824 | 74944899 ~ 74945117 (+) | True | G1487813 |
| XR_005036708.1 | mRNA | upstream | 69295 | 74768632 ~ 74770253 (+) | True | LOC118940106 |
| XM_021569743.2 | mRNA | upstream | 90429 | 74746187 ~ 74749119 (+) | False | LOC110494565 |
| XM_021569744.2 | mRNA | upstream | 90429 | 74746432 ~ 74749119 (+) | True | LOC110494565 |
| XM_021569740.2 | mRNA | upstream | 98067 | 74736221 ~ 74741481 (+) | False | adnpa |
| XM_021567517.2 | mRNA | downstream | 12051 | 74854126 ~ 74858312 (+) | True | LOC110493256 |
| NM_001124320.1 | mRNA | downstream | 16839 | 74858914 ~ 74861767 (+) | True | LOC100135982 |
| XM_021569748.2 | mRNA | downstream | 35118 | 74877193 ~ 74895463 (+) | True | gnl3l |
| XM_036950657.1 | mRNA | downstream | 76189 | 74918264 ~ 74928441 (+) | False | LOC110494570 |
| XM_021569749.2 | mRNA | downstream | 76195 | 74918270 ~ 74928441 (+) | True | LOC110494570 |
| TU1700469 | other | upstream | 430359 | 74388536 ~ 74409189 (+) | False | LOC110493252 |
| TU1699979 | other | upstream | 860113 | 73978890 ~ 73979435 (+) | True | G1486811 |
| TU1698921 | other | upstream | 1557529 | 73281260 ~ 73282019 (+) | True | G1485819 |
| TU1698303 | other | upstream | 1714192 | 73122826 ~ 73125356 (+) | True | G1485260 |
| TU1698249 | other | upstream | 1793960 | 73044737 ~ 73045588 (+) | True | LOC110494525 |
| TU1703557 | other | downstream | 1841524 | 76683599 ~ 76684020 (+) | True | G1490016 |
| TU1705554 | other | downstream | 3166215 | 78008290 ~ 78008799 (+) | True | G1491886 |
| TU1705568 | other | downstream | 3176293 | 78018368 ~ 78019816 (+) | True | G1491899 |
| TU1705667 | other | downstream | 3346937 | 78189012 ~ 78190290 (+) | False | G1491963 |
| TU1705669 | other | downstream | 3346937 | 78189012 ~ 78190290 (+) | False | G1491963 |
