RNA id: XM_021569749.2


Basic Information

Item Value
RNA id XM_021569749.2
length 4017
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110494570
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74918264 ~ 74928441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACGCTGCACTGCAATGGTTCAGGCGTCAGCAACGCTGCTCTGCAATGGTTTCAGGCGTCAGCAACGCTGCTCTGCAATGGTTTCAGGCGTCAGCAACGCTGCTCTGCAATGGTTTCAGGCGTCAGCAACGCCTGGGCACAGGAAGATCTTTGCATAACGACAGTCTTAATTCATTATTTTGtaaccttagctagctaacatcggTATGGCCTAACTAGGCAGCCTGTCATGCCAGTAGAACCCGTTTCACTTTTTGCTAATTTTCTAACGTTAATCAGTCACTGCAAGTGATTTCAAATACAATTCAATTATTGAACTGGAATCAAACTAGTTAATTAATTCAATGTAACGTTATATCCTATGTGCCCGCTCAGACTGTGGCGGAAGCTCTGTCTGAACGCAAGTACCACTCGCAAGCGATACAGTTTTGGAAAAAATATGGAACGTAACTTTGATATCCGTGAAAAATAATTTTCTAAACACAAAAAGGTTAAATAACTATAGACTTTATGGCTAGCGTTTCTACACGGCCATATTTCCATTTTACATCGCTTGTTTACAAAGTCGGCgactacctgtgctaattagctatcggcatctctgaacacctgtgtgtaacggAAGGATGCCACAAACATATTGTAACTGAAAAATGGTCAACTTTCAACTGTGTAAagctgcaacCGAACTCTGAGCCATGTCGTCACGCTTGTTGCTTCGGCAGCAGCTGATGCGAGAACAAGCCCAGGAGCAAGAGAGACAGGAGGCCCAGGAGCAGGCCTCTGTGGCTCAGCTCAGGGCAACTGACTCCACCCCTGCTGTCGCTGTCACTCTGCCCCCAATAGCTGCTCGCCCTCTTTCCGCACAGGTGCCCGTGGAGGTTTTGAAGGTGCAGACCCACCTGGAGAACCCCACCAAGTTTCACATCCAGCAGTCTCAGAGGCAGCAGGTGAAGCAGCATCTCTCTGCCACCCTCTGCAATAAGGTGGCAATTCAGACCCTGGGTGTGTCTCCCCTGGCCCTGTCTAGCTCTGCCCCTGAGATGGATCCCATAGCCCGCAGTGTTACCAACAGCTCCATGGCTTCACACAACCTGGGATCCAACAAAGAGGAGCTCCCCTGGAACCTCCTGGAAGTTAACCATAGTCCTGGAATGGCAGTACCTACCCACACTGTCAGCAACTCCTGCCCTGTGGATCTAACCAATATTAAAAGGGAATACTCTGATGCAGATAACAAAGCTcgggtgaaagagagacagaagaaagaCAACCATAACCTCATTGAGAGGAAGCGGAGGTTTAACATCAATGACCGCATAACAGAGCTGGGGTCCATAATACCCCATTCAAGGGACTCGGAGTTGCGCTGGAATAAGGGCACCATTCTGAAGGCCTCAGTGGACTACATCAGGAAGCTGCAGAAGGAGCAGCAGAGAGCCAAGGAGGTAGAGATGCGTCAGAAGAAGCTGGAACATGCTAACCACTGCTTGATGCTGCGCATCCAGGAGTTGGAAGTGCAGGCTCAGCTTCATGGACTCTCCAGCCCGATGTcctatggtctgagttcagacccctccttcccccagcagCAGCACCTTCAGCAGGGAGGTCATATACTTGGGCCCAGAACTGGAGTAGCCTGCTCCCAAACCTTTCTCAGCCTGGGTGATGCAGCCATGGCACAACCCATCCctacctccttcctctctccaccctcctctgaCTCCCCTGCGGGTGTGACCATAGGCAGCCCCCTCGACCTGGGCAGTCTGCGCTTTGCCGAGCTGGATGACCCCTCCAATGCTGGGCTGTTCCCAGGCGTGGGGTTGGGGGACATTGTCATGGATGAGGGGTGCACACAGTCCCCTGAGAGGGTGGACCCACTGTTTTTTGTGTCACCAGGTGCCTCAAAGACCAGCAGTCGTAGGAGCAGCTTCAGCATGGAGGAGGACTTGTAAAGGGTCTTATTAGCGTCAAGCTGATCGAGAGAGAAGGGATTTAGGGAATGAGAGGGctagggaaggaggaggagcacaGGAAAATAAGAGCCCCCAGTTAAAACACTGCATATGGCACTGGACTCTGCTTTAAAACAAACAGCCAATCGTTTAACTAAACAGGACTTTGATCTGAATCATGCATCAGTACAAAATAAATGACAATCCTTTCCTCTCTTACCAAGTTAATATCGGTCCCTGATCTTAGAAAAAGAAAAAAGCTTTTCGGTACATGAATCAATAGTAATGCAATCATTTTcaaatagaaaatagtaaaattagTTTTTGGATATGGACTATGGACATTGATTTTTGTTCTGTTTCTTGCAAGACTCAACTCAACCAAGAGTTCCCTGTAGAGAAATTAAAGAGGAAATAGTGGTGGTTTAATCAAGTACGTTATTGGTCCTTATAGAGCGTATACTTTGTGCACTTTGCAACTTTTGTGAGAGCAATGAGGTTCTTGTATCTATTTAGTGAAACTGGCATGAACTACATAACGGGTGTGCTATTGAATTGAGATATTTTTTAACTGACTTGAATCAGGATTTGTTAGCTTAAAGTCTGTCTATTTTTACACATCTCGGAAGGTTTGTCtaaaaaaacatatttgataacctgtaaaaaaaaaaaaaaatctagatttACTGTATCTTTAATTTACTTTCAAAACATGTTGTTGTGACTTTTTCTGTTGTCTATGCATTTACTTTTAACGCTTTTGTCTGTTGAATGGTTGTACAGCTGGCCAGTAACTCAACTAACAATGaccaagagaaggagagaagtaaAACAAAAGCTACTGCAGCTAGTTAGCCAAAGCAGGTCACCTTTCACAGAATGGTAATATATTTAAGTCATAATATGGGTGtgttatatattgttatatagtAAATGGACGTATAGCTTTAACGTATGTTAATCTCTGAAACACTGCATGctacatgtgtgtttgtgttgcaaaAACATGTACTGGGTTGTATGCAGTAATCTATTTCTGAGATGGTCATTTGTGATGATATGATAATGTTAAATAAGATTTATATAGCTGGTTTCCAAGGCCAAGTCACATAGACTTGGCCTCTAACtctttttttacatgttttatttttttacctttatttaactaggctagtcagttaagaacaaattcttattttcaatgacggcctaagaacagtgccTGTTCAGATTTGAACTTGAACCTttaagttactagtccaacgctctaaccactaggctaccctgccgctactTCCACTACCTTTTCCTTAGTCCTCTAATCTGAAAATGTGTATGGTCATGGGACTGTCTAACATTCCCCATGTTTTTCCCAGAGACTGAAATCTGTATATGGTTATCACTCCTCTAGCCTTCATACTCTTTCTTTAATTtgtattgacaagtttttcaaaGAAAAGTACATTCATTACCTGTATATGTTTAGGAatttgtttccatgtctgttttaTCTATTGCCATTGATGCTTCCCAGATGCTTGTCATTCTTGAAACAATTGTGCCTTTCCTCCATGTCAAGGAAGATCCCTGCAGTGTACTCTCCTAACGCAGGCTTTTTTTTCTGGAGATGAAAATGTTTGAGACAAACAATGCAATATCTATCTGATTATCTGTTTCTATTGCAAGTTgtagtgtttgtttgtgtcaatTAATCCCTTAAAAGATGGGTTGCCAACTGGCGATTTGACACACAATTAAATTTTTTCATTCATTGTCTGTGACTTGAATGTAGCTGTGGTTTGATATGAGATCCTATAATTTGAATcatttagaaaaaatatatatttttgttctgatTTTCAGTTATGGTTCTGCTTTTACTGGAATGCAAACCTCTAACAGCCTTAAAGGGAATATATTGTTGTTGGACACTTTTATATTTGAATGTGTATTGAATTACTAGCTTTTTCTATGCTCAGATAAGTAACCTGTCTAAATCTACACTATTGTCTggtgtgtttgtttattttaaaCTAAATAAAAATCAGGAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1701119 lncRNA upstream 18586 74899433 ~ 74899684 (+) True G1487790
TU1701107 lncRNA upstream 42881 74875182 ~ 74875389 (+) True G1487778
TU1701100 lncRNA upstream 46427 74871620 ~ 74871843 (+) True G1487771
TU1700945 lncRNA upstream 130924 74787058 ~ 74787346 (+) True G1487650
TU1700939 lncRNA upstream 145487 74772561 ~ 74772783 (+) True G1487644
TU1701139 lncRNA downstream 1241 74929682 ~ 74929897 (+) True G1487809
TU1701143 lncRNA downstream 16458 74944899 ~ 74945117 (+) True G1487813
TU1701183 lncRNA downstream 79025 75007466 ~ 75012176 (+) True G1487838
TU1701338 lncRNA downstream 110556 75038997 ~ 75039259 (+) True G1487973
TU1701344 lncRNA downstream 114496 75042937 ~ 75043140 (+) True G1487979
XM_021569748.2 mRNA upstream 22807 74877193 ~ 74895463 (+) True gnl3l
NM_001124320.1 mRNA upstream 56503 74858914 ~ 74861767 (+) True LOC100135982
XM_021567517.2 mRNA upstream 59958 74854126 ~ 74858312 (+) True LOC110493256
NM_001124322.2 mRNA upstream 76195 74839548 ~ 74842075 (+) True opn1sw2
XR_005036708.1 mRNA upstream 148017 74768632 ~ 74770253 (+) True LOC118940106
XM_021569751.2 mRNA downstream 9327 74937768 ~ 74943605 (+) False cxxc1b
XM_021569752.2 mRNA downstream 9507 74937948 ~ 74942626 (+) True cxxc1b
XM_021569753.2 mRNA downstream 22257 74950698 ~ 74968199 (+) False mbd1b
XM_021569754.2 mRNA downstream 22257 74950698 ~ 74968199 (+) False mbd1b
XM_021569755.2 mRNA downstream 22257 74950698 ~ 74968199 (+) False mbd1b
TU1700469 other upstream 509081 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 938835 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1636251 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1792914 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1872682 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 1755158 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 3079849 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3089927 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3260571 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3260571 78189012 ~ 78190290 (+) False G1491963

Expression Profile