RNA id: XM_021569752.2


Basic Information

Item Value
RNA id XM_021569752.2
length 2260
RNA type mRNA
GC content 0.48
exon number 14
gene id cxxc1b
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74937768 ~ 74943605 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACATGCGTTTTGGTTTGTGTGAATTTCATGGTTAGTTGCCTAACATAGCAATTGTCTAGATTAGTGTCTTCGCATTTGCTAAACCGGCTAATGCTAGCCAACACTTTTAGCAAGCTAACGGTAGCTAGCCAGTCGCAATGGAAATGCAACAGCTTGCCGACTCTTTTCAGACTTTTAGCTTGTTACCGTTTGTTAGTTAAGCATTCGCTATCTGTTTTATGTCTCAGGGTATAGCTAGCGAAGTAGCCATCTGGAATAGCGAGATATAGCTAGCGAAGTTGCCATCTGGAATGcgaaatcatttttttttaaccaacaATAGATTGTATAGTTTGGGCAGACTAGTATGTCCGACTCGACGTAGAATAGACCGTAGTATAATAACTTTAGATATTAATGTTTGCCATCCGATTAGTTGTTTTCGACATAATAATGATGATTAGCCGATCAGATCGAACCTCCAGCGGCATAACGTTACCGAAGTACTGTAACTAGCTTGTACTCTGGAGATCGAGCCTACAGTCCATTGAAATCATGGACAGTGAAGTGTCAGACTTTGAGCCCGCACCAGGGCTTGAGAGCAGTATGGAGGGCGAGAATGCACCAGTGTACTGCATTTGTCGAAAACCTGACATCAATTGCTTCATGATTGGTTGTGACAACTGTAATGAGTGGTTTCATGGTAACTGCATCAATCTCACAGAGAAGATGGCCAAAGCTATCAGGCAGTGGTACTGCCTGCGATGCCGAGACAAAAACCCATCATTGGAGATAAAATACCGTCCAAAGAAGAGCCGTGAAAAGGAGGCAGAgggccagagagagccagagagaaaatTTGAAAGACAAAACAGCACTCCAGATTATAAATCTGAAAGGCGCCGTGGATCAAAGGTTAAGCGCTCTGCTCGTATGTGTGGAGAGTGCGAGCCCTGCTTGAGGACTGAGGACTGCGCCACATGCGACTTCTGCAAGGACATGAAGAAATTTGGGGGTCCCAACAAAATAAGACAGAAGTGTCGATTTAGGCAGTGTGACGTCCGAGCCAGGAAAATGTTGCGTGTGAAGGATGAAGAGTTTAATTTGCGTGAAAGGCGGGATAATTCCTACCACCGGAGAAGACGATATTCAGACGACTACGATAGTGAGGCAGAACTCTATGAAAAGTACAAGGCAGCGGGATATGACGACAACATGCCATGGCTCAGTGATGAGGATGACGGGCCTCCATTCAGCCCTGTCCTGCGAAAGAAAGCTGTGAAGGTCAAGCATGTGAAGAGACGGGAAAATAAATTTGACAAGAAAAAAGAGTCACGGCGGCACAAACAGAAACAGAAGCACAAGGACAAAGTCAGGCACAGTGATAGGGGCGATGCCAGGGATGGAGGAGGGCAGCGACAGTGCCTCGGGCCCAGCTGTGTGGAAGCTGCACGAGCCAACTCAAAATACTGCTCAGAAGAATGTGGCATGAAGCTGGCTACCAaCCGGCTCTATGAGATACTCCCTCAACGTATCCAGCAGTGGCAGCAGAGCCCCTGCATCGCTGAGGAGCAGGGCAAGAAGCAACTGGAGCGGATCCGACGGGATCAGCAGAATGCACGCATGCGTCTCACTGACATGGAGAAACGCTTCCACGAGCTGGAGGGAATCATTGCTAAGGCCAAGCAGCAGGTAGTCCAGCAGGATGAGGAGACGAATGAAGGGGACAATGAAGAAACAGACCTGATGATTTTCTGTGTGTCCTGCAGTCACCCTATCAACCCAAAGGTGGCACTGCGACATATGGAGAGATGCTATGCTAAGTATGAGAGCCAGACATCTTTCGGTTCAATGTACCCAACAAAGATAGAAGGAGCAACAAGACTCTTCTGCGATGTGTACAACCCCCAGAGCAAGACCTACTGCAAGAGGCTTCAGGTTTTGTGCCCAGAACATTCCAGGGACCCAAAGGTCCCAGGGGATGAGGTGTGCGGCTGTCCTCTAGTTCGTAATGTGTTTGAGGCAACAGGCGAATACTGCAGGGTTTCTAAACGCAAATGTAATAAGCACTACAACTGGGAGAAGCTCAGGAGAGCTGAGGTGGACCTGGAGCGTGTCAGAGTGTGGTACAAGCTGGATGAGCTCTTTGAGCAGGAGCGCAACGTCAGGACTGCTATGACCAACAGGGCAGGTCTACTTGCTCTCATGCTGCACCAAACCATTCAGCACGACCCCCTGACAACGGATCTCCGTTGCAACAAGGACAGATAGCCGGCTGCA

Function

GO: NA

KEGG:

id description
K14960 CXXC1, SPP1, CPS40; COMPASS component SPP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1701139 lncRNA upstream 8051 74929682 ~ 74929897 (+) True G1487809
TU1701119 lncRNA upstream 38264 74899433 ~ 74899684 (+) True G1487790
TU1701107 lncRNA upstream 62559 74875182 ~ 74875389 (+) True G1487778
TU1701100 lncRNA upstream 66105 74871620 ~ 74871843 (+) True G1487771
TU1700945 lncRNA upstream 150602 74787058 ~ 74787346 (+) True G1487650
TU1701143 lncRNA downstream 2273 74944899 ~ 74945117 (+) True G1487813
TU1701183 lncRNA downstream 64840 75007466 ~ 75012176 (+) True G1487838
TU1701338 lncRNA downstream 96371 75038997 ~ 75039259 (+) True G1487973
TU1701344 lncRNA downstream 100311 75042937 ~ 75043140 (+) True G1487979
TU1701377 lncRNA downstream 131144 75073770 ~ 75074016 (+) True G1488009
XM_036950657.1 mRNA upstream 9507 74918264 ~ 74928441 (+) False LOC110494570
XM_021569749.2 mRNA upstream 9507 74918270 ~ 74928441 (+) True LOC110494570
XM_021569748.2 mRNA upstream 42485 74877193 ~ 74895463 (+) True gnl3l
NM_001124320.1 mRNA upstream 76181 74858914 ~ 74861767 (+) True LOC100135982
XM_021567517.2 mRNA upstream 79636 74854126 ~ 74858312 (+) True LOC110493256
XM_021569753.2 mRNA downstream 8072 74950698 ~ 74968199 (+) False mbd1b
XM_021569754.2 mRNA downstream 8072 74950698 ~ 74968199 (+) False mbd1b
XM_021569755.2 mRNA downstream 8072 74950698 ~ 74968199 (+) False mbd1b
XM_021569756.2 mRNA downstream 8072 74950698 ~ 74968199 (+) False mbd1b
XM_036950658.1 mRNA downstream 8072 74950698 ~ 74968199 (+) True mbd1b
TU1700469 other upstream 528759 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 958513 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1655929 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1812592 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1892360 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 1740973 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 3065664 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3075742 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3246386 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3246386 78189012 ~ 78190290 (+) False G1491963

Expression Profile