RNA id: XM_036950661.1


Basic Information

Item Value
RNA id XM_036950661.1
length 7335
RNA type mRNA
GC content 0.42
exon number 20
gene id LOC110494575
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 75000076 ~ 75014313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacgcggaGCCAGCTAGTGATGGGCATTCCGAGTCTTTTCGGTGAGCCGGCTGGCCCATTTGGCTCCGTTCACGTAAAAAAAGCCGGCTAATTTGGCTCCCAAACGGGTCTTTGTTCAAAATGCTTAAAACTTGAACTAGAACCATGAAAAATCGCAAATCTACAATGTAAAGCTCAAAAGGTAAGATACCATTATCTCAGATTGTGAAATGCGCgttcaaatatatttttacctgGCCAAATGATTCGTTTTTGCGTGGACCAGATTCATGCGCTCTCCCCACTATTTATTGTTTCTGTAGTGAGGATTCAAATTCTTTAGGTAATTATTTTGTAACGTAACCGTAGAAAAATGTTTGAGCTCAAAAAGCAGTAGCTGCAGTATGCTAATCAAGGAGCCAAATTAACGAGTATTTCACTGATACGATTCGGTTCCCAATCTTAACCAAAAAGATATTTTCAAAAGAGCCGTTCGTTCGCGACGCATAATAAGAGCAAACGTTGACGAAGAAGGAACGGTCCTTCAGTTTACTGGTTAAATCGGAGGACTCTGTTTTTCATTATTATATGCCTTCTGCGTGTACCATCTTCATCTCCATTTTCTTCAATCCTGCCCTTGCATGACCTGTGCTGTCTAGGCTAGAAGGCATCGGCTCCCTGTTCTATTGTGTGTCCCTTGTCACAATGTCCAATGAACCTTCATCTAGATATGCTGCTGCAATATCAGCCCTTTCCCTCAGTTTACCTGCTGTTAACCCCAACCCAACCCTTACCCTCGGTTCATCCACTGCCCCCAACCCACCGCTTACCCCTAAACCCTCTCTTATCCCCAAATCACATTTTACCTCCAAATCCCTTACCCCTAAACCACTAGTTGCCCCTACCCCCAAACCACCCTTTGCCATCAAACTACCCACTGCTGCCAGCCCAGCCCCTTTAAATTCATATCCCCCTTCACTTGAGATTTTGGGATCAGATGATGAGGAACAGGAGAATCCATCTGATTACTGCATAGGTGGGTACTACCCGGTGGAAATTGGAGAGATATTCATTGACCGTTACCAGGTGGTGAAGAAGCTGGGATGGGGCCACTTCTCTACTGTGTGGCTAGGCTGGGACATGGAGAAGAGGCGTTTCGTGGCTCTGAAGTTGGTAAAGAGTGCTCCAACCTTCACAGAGACCGCTTTGGATGAGATCAAGCTTCTGAAATGTGTAAGGGACAGTGATCCATCTGACCCTAAACGTGAAACTGTTGTGCAGCTTATTGATGACTTCAAAGTCTCTGGAGTCAATGGGGAGCATGTATGCATGGTTCTTGAAGTTCTGGGTCACCAGCTGCTGAAGTGGATCATCAAATCCAACTACACTGGCCTTCCCCTGCCCTGCGTTAAGAGCATCCTTAGACAGGTTCTTCAGGGCTTAGATTACTTGCACACTAAATGCAAGATTATCCACACAGACATCAAGCCAGAGAACATCCTTTTGAGAGTGGATGAGGTTTACGTCCAGGAGCTGGCAGCAGACACCAAGCTATGGGAGCTGCCAGTGTCTTCTGCTCCCACAAGCTGTTCAGCAAACACCAGTCTAAGAGAAAAGCAGATTGTATCAAACTTGATGGGGAAATTGACGGTGGCTTTCCAGGCTCTTGGGGTTTGGACTGGGAAGGTCTCCAGGATCCCGATGGCCAGGTTGTCGAGGAAGGAGAAGAAACAACTACAGCCGCAGAAGGGCGAGGACACTTTAGTTGGCCGTCAGAAGAGGGAGAAACCTCATGTGTCATTCTCTAATATCACCACTCCCTGTAGCATCCCTAATTCCACCTCGTCCCCTAAGCCTTCAGGTCCTGTGCATACTACTTGGAGACGGACCCTGCTGCATGAAGAAGCAATGGGCTCTGACAGCAAGGAGTCGGCCTCGTCACCGATGGAAGATGCACCATCATTGACTACAATGTCTCACTGTTCTAGACAATCTATAGTGTTACATCATTCTACCCAGAGAGACAACCTGCCCTCATCACCATCACATGGGTTAAGTGAATCAGATCTGTTGGTGAATCTTCTGAAGCCACAGAATGCTGATAAAATCAGCATCAAGATTGCAGATCTGGGAAACGCCTGCTGGGTGTACAAACATTTCACAGAAGACATCCAGACCTGCCAGTACCGCTCTGTTGAGGTCCTGATTGGGTCTGACTATGGCACTCCTGCAGACATCTGGAGCATAGCCTGCATGGCGTTTGAGCTGGCTACCGGGGAGTATCTGTTTGAACCCCATTCAGGGGACAACTTCTCACGAGAGGAAGATCACATTGCTCACATAATTGAGTTGCTGGGACCCCTTCCATCCCAGTTTGCCCTCTCAGGGAGAAACTCCAAGCGATATTTCAATCACAATGGGCATCTGCGGCGCATCTCAAGGCTGAAACCGTGGAGTTTGTGTGAGATCCTTCTGGATAAGTATGAGTGGCCGCGGGAACAGGCAGTCCAGTTCAGTGCTTTCCTCCTCACCATGCTGGAGCCCCTCCCAGAGAAGAGAGCCACCGCTGCCCAGTGTCTGAAACACCCCTGGATCTCCTTATAGACACAAAGCCACCACCGCTGCCCAGTGTCTGAACCCGATCTGGTTCTCCTCATGGATACAGAGCAGTCTCACCGATGACAGAGGTTACACAGGTGACACAGCGTCAAACAGGCTGGGACAAGTGCCTTAATATGATGTTTGAATAGTGGGTAATGGCTGATATTCAGCAAGTGTTATTTTTTCAGCTGATCTTCTGCAATGTTATTTTTCTGTTTGCTCAGGGAGAGCAGTCAACTATCAATATATTTTGTCTGATTATTTAACACCTTTGATGTAAAGAAAATAACTTTTGATTTGGAGAGATATGCCAGATGGCCAGTCTGCCCCTGCTGggaaagctctatttttgtttttgAGTTTCATTGAATAAATGTTATTTGTTTATACAAGGCTTTCATTATCTATCACTTTTCTCTGAATAATAAGATAAAAAAGATTTTGACAGAATTAATAGAAATAGGGTTAGACATTGTGTTAATTTAGCCAATTCATGTATGAATTCAGAATACTCTATGGCTGCATTTAGACAAGCACCCCAATTCTGATTTTCTTTTCACTAAttggtgattggtcaaaagacgaATTAGTGGAAAATGTACGCAGCCTATGTGATTCACCTGAATCCTGTCAtaagaccagtggaggctgctgagggaggaatgctcataataatggctggaatgcagcaaatggaatggcatccattatttgatgtatttgatatcattccaccaattccactccagccattaccacaagcccgtcctccccaattaaggtaccaccaacctcctgtgcataAGACCTAATGGAATGACGAAGAAGCAGTGGCTTCAAAGGGGATTAGGATACTGTTGAGTAGGGCTCAACACTGTAGCCCGGTCACCCAGTCCATGCAGGGTAAGCCATACCTCCCCTGTTTTCACTGCTTCCTTCTGTGCCGTCCCTTCTTTCTGTGTGAGTGTGCTGTGAGTATGTGTTGATGACTGAAAGTGTGCTTTAGTGAGATCTCCACAGCCACACATTCCTCTCAGTTCACATTAAAgtggcaatctgcagttcaaacaataacaaagcggccACCCAGCCACCaatggtcagtccttgtatctAAAGCTCTCAATGagtttgagtggttacatttctccagccccctccctcagctgtttacctaATCCATGTTttaaggctatacagtgtttgttccaatttacattgtttacaaacaaaggaGTAAAACAAGCATATATAGTTTGTTCTGATGGGGAACGACAGCTCATGATGCATcaataagttatattcttcaaaaaaTTAATGGGTATAcatcattcatttaaaagtctAAAAATTGATGTAGGAACTGCAGATTGACGCTTAGGGAGGGGTTAGTCTCATGAAAATGTGAGTGTGCGCTCATGTGTGAGACAAACTGCACAAACTGCAGGTGTGAAACAGTTTTATGGTGAGAGGCAGCATCAAGAAGGAAGAATATCACCACCCTGATTGGAGACAGACGAGCTTCAGATGGAAGTGATCCCCACAGCTATGCAGTATCATGGAAGACTGGCACTACTGTGGCATGATGTCATCGTGGAGCGTGCTCTTGACACTTTGACCCTGACATCACGTCCTCAGGCAGTGCAGAGGAAAGCCGCTGTGGTAGACCCCCAGAGTGTGATCACAGCCATCGACCACTTCTGCAAACAGAGAATGGGCCATGAATATGGGCGAGGAGAAAGGCTCCATTCCGGACTCTGTGGTCAATGAAGTGAGTCCAGTTACTGTCTTGGAGTTAGGCACTTACTGTGGGTACGCAACAGTGTGAATAGCTCGCCTATTACCCCCTGGCGTCAGTGTCATTACCTTGGAGTTCAACCCAGATTATTCTGACACTGCTCGTCAAGTCATCAGATGGTCAGGACTGGAGGAGAAGGTGCAGCAAGTGGAGGGAGCCTCAGGAACTTGGATCCCTCGATTGAAGGAGCATTTCGGGGCCCAGGCGTTTGACTTAGTTTTCCTGGACCACTGGAAAGATCGCTACCTTCCTGACACAAAACTTCTGGAGgagtGTGGTCTCATACAGAaaggcacagtgatgctggcAGACAATGTCATCTGTCCAGGAACCCCTGACTATCTGTAGTACGTCTGCAACAGCTCTCAATACAACAGCCACTACTACAGATCACACCTGGAGTACACTAAAGCAGAGAGCGTCCTGGAGAAGTCTGTGTTCTTAGGGTACTAGCCAAACAGTGAGCCTCTTGCTTTAAAACACTAACTCTCTCTTGATAAAACATTTTGGGTTAGTTTCAATTCAAAGTGCTGCCTTATGACATGCTGTAACTTACTGTGCTAAGCATTTCTTTATCTGTAGAACTGATGTTATCTAGAGTAAGCAAATATGTCTTTGAAAAACTATTTCTACTTGTGTTTTGACATTGTCACAATGCTGTCTTGCTATGCAAATGATGAAAATACCATCAGTTTTATAGCTACAGAATTGCAGTAGTGTGATGTCTTTTTCAAAAATGGATTTAATACACTAGGTGGCAGTGGTGTGCCTTTTTAGATATTCAATCAGACAACTGAAAAGCAGCATGCAGTGGTCCCGTCATAACTTCATAGCATTTATAGCCTTCTTTCCGATGTAGGTAGACAGAAAATGGTCTAAAGTCTTACACCATATCTAGCAACTTAAAATAATTATTAATATTTTGTTTTGACACTGTATCAGATCTACATTGAGTCATTTAAGGTTCTGTGAGAAAGGTCTATGTTGCACTGCTTTAAACTAATTTTATAGATTTAAATCTTTGATTTGATAAAATCCAATGGGCATTAAACAGATCACTAAGGTATTAAGTCGGATATTAACAGTACTGATTAATGTGACTTATCCTGGAGATGCTATAGAAAATGATCACATCTATACAGTAGAGAAACAAATGCACCAGATGTACCTGATTGTGAATCACAGTATTGTTTCAGTTGATAGAATATGTCCCTTACATGATATTTCGACATGTGAATTAACAGGTGTGTATGAGAATGTATGAATCAAATCAATGCCTTTCTAATCTCCCCTGCAAAGTGACGGAGTGACGGTGTTCCATCATAAATGGGGGAGGGACTACATATAGAACATGCTGCATAAAAATATATAGGCTAGTCCACCTAGGGATTTCTTCACAGACGCCCGCATGATAATCCCAATCTGTGGCCATTAGTGcactgagagagaagagggttcgggagagagagagggaggggggtcaacagagagagggggagtgacagagagaaacagagagcgagagggggagagctTTTAAGGGATTTGGCAGTGATTTGTCGAATCTCAGTGGCGTAATGTGCTTTTTCTACTTTTTCTACTGATTTAGACATGATGCTATACACGGAAGCCTCGAAAGCCAACGTTTTCAATATGTTTTTATGAactaaaacaatttttttttatgttattgAACAATTTGAGTCCATTACAGTTATTTTGGGAAAATAAATATAACATCTGAGATGTTAATAGATTTACTTTTCGCTAAAACAACGAAGAAACGGGCACTGAATATCATCACATATTAAATATGGGAATAGGCCTATTTGGGAATGATGGCGTGATGGGTCAAATCAAGACTGGTCCAAATGGAATGCTCAGGTAAGCAGTCAATTCTTATATTTATGTACAAATATATGTCACATCTCTATTTCAAGGCCTTGCAGAATTTGTGTAGACTTCAGGCCAGTATCCAACACAGTTTTTTCATTGTTTGCACAATATTGATGTGTGCATCAAATGATAGCATGTGATGTTTGGTTGGATGATAATCATACAACTAAGATAAAATGTTGTTTTGCAACAACAAAAGGTTTAAAGGTTTAATTATCCTTACTCTGTGAAACATATTTGCACAACAATATTGTAATTTCAATATCTTTAGTTGGTTATGTCTtaataaccttttactgcagttggctaaatcagggtcacacagagtgtttcttggtagtcttaaacaaatctactttgaaacaatagtatacacctcacacacatggttatgggcttaaaaaagacacatgtaccatgtcagatatagattTGTAATGTATTATATTTTGAGTTTGCATTCCAATGTACCACTATATACATCAcaaaagactgaaatataacaaaaccgtttaaATTAACaaagaaacaccagatttttggCAGCTTCAAAAAAGAAAAGTATAttaattatgattttttttttttgcaatataACATTACATCCTTGAGGCCACTCAGTCATTTGATTGCAAGAAACGGGTACACCAAATATTTTACCAATTTTCAATACTGTTATAACTTATTCGGATCTCCCCCTCACATAGTGAAAATGTAAGAAAAGTAAGCTGGATAGGCAGTCAAACTGTGAGCTATATTTCAGTATATATATTCTTAGCGTCATATCGGGATGAAATTCCTTGTTCCTTACACAAGTCATATTTTTTATCTTGAACATGCACCTTAATTCTTCTATTTCTCTCACCCCTATGTCTCCCTTATGTTTCATTAAACCTAAACAGTATTACAGAACATAATGAAAATAACATAAAacacatatactgtatctgtCCATGTTCGCTTTTGTGAAATATTTATGCAATGTTATTACTATGCACTTTGCTGCTCTCTTGGCTGTGTTTTACTTGTCCAACCCTTTTCATACAGATAACCTTTACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1701143 lncRNA upstream 54960 74944899 ~ 74945117 (+) True G1487813
TU1701139 lncRNA upstream 70180 74929682 ~ 74929897 (+) True G1487809
TU1701119 lncRNA upstream 100393 74899433 ~ 74899684 (+) True G1487790
TU1701107 lncRNA upstream 124688 74875182 ~ 74875389 (+) True G1487778
TU1701100 lncRNA upstream 128234 74871620 ~ 74871843 (+) True G1487771
TU1701338 lncRNA downstream 24684 75038997 ~ 75039259 (+) True G1487973
TU1701344 lncRNA downstream 28624 75042937 ~ 75043140 (+) True G1487979
TU1701377 lncRNA downstream 59457 75073770 ~ 75074016 (+) True G1488009
TU1701391 lncRNA downstream 70558 75084871 ~ 75085268 (+) True G1488022
TU1701392 lncRNA downstream 71151 75085464 ~ 75085762 (+) True G1488023
XM_036950670.1 mRNA upstream 2459 74968357 ~ 74997618 (+) False ccdc120
XM_021569757.2 mRNA downstream 555 75014868 ~ 75034468 (+) True grm6b
XM_021569765.2 mRNA downstream 29592 75043905 ~ 75050060 (+) False mon1a
XM_021569766.2 mRNA downstream 30732 75045045 ~ 75050060 (+) True mon1a
XM_021569767.2 mRNA downstream 38565 75052878 ~ 75071027 (+) False mst1rb
XM_036950674.1 mRNA downstream 40961 75055274 ~ 75071428 (+) True mst1rb
TU1700469 other upstream 590888 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 1020642 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1718058 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1874721 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1954489 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 1669286 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 2993977 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3004055 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3174699 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3174699 78189012 ~ 78190290 (+) False G1491963

Expression Profile