RNA id: XM_021569757.2


Basic Information

Item Value
RNA id XM_021569757.2
length 4423
RNA type mRNA
GC content 0.48
exon number 11
gene id grm6b
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 75014868 ~ 75034468 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgcgtgtgcatggaacatttctgggatcttttatttcagctcatgaaacatgggaccaacactttacatgttgcattcatatttttgttcagtatatatgccAGTGATGTCAAGACATTGTGTATTGTAATTTCTGCTGCCATGGTTAGAGCATTTGCAGATCAATTTGTATGATAAACAGTTATTTGACTCATGCAGTGTTAgtttaaaatgtatgtaatgAAAGCTATACAGATGTATTTAACTTAACCAAAGACCAACATGTCCTCATTAAACTGTTCACAGGTATCAAAGGTAGAGGGAGGAGCCTGGTACTTTAACACTGGATACAGGAACCTTTGATGGCCAAAATCATGACATCACAGAGCCACAAATCGCAGTCCTGCTGTGGGTTTGGTCCACCTTTTGGATGTCATGTAACAACATTTCCCAGGTTACTGTTAATGCTGTTTCTGGGTCTAAGTCCAGAGACATGGGCTCAGCAGGGCACACAACCACACTCCATCAAGATTGAGGGGGACATCACCCTGGGTGGCCTGTTCCCAGTGCACTCCCGTGGGCCAGCCGGTGTGCCCTGTGGGGAGATCAAGCGGGAGAAAGGTATCCACCGTATGGAGGCCATGCTGTATGCCCTGGATCAGATCAACAGTGACCCTGACCTCCTGCCTAACATCACACTGGGGGCCAGAATCCTGGACACCTGTTCTAGAGACACCTACGCCCTGGAGCAGTCGCTAACCTTCGTCCAGGCCCTCATCCAGAAGGATAATTCGGACGTGCGTTGCTCTAATGGCGAGCCACCCATCATTCCCAAACCGGAGAGGGTGGTCGGAGTAATCGGGGCATCCGGCAGCTCAGTGTCCATCATGGTGGCCAACGTGCTGAGACTCTTTGCGATCCCCCAGATTAGTTATGCGTCCACGGCTCCAGAGCTGAGTGACAAAAGCCGTTATGAGTTCTTTTCCCGTGTGGTCCCTCCTGACTCCTACCAGGCCCAGGCCATGGTGGACATCGTCAAGGCTATGGGGTGGAACTACGTATCTACACTGGCCTCAGAAGGAAATTACGGAGAGAGTGGTGTCGATGCCTTCCTCCAGATATCTCGAGAGGCAGGAGGTCTATGCATCGCCCAATCCATTAAAATCCCCCGAGAGCCCAAACCAGGGGGCTTTGATAAGATCATTAAGAGATTAATGGAGACCTCTAATGCTCGTGGGGTCATCATCTTTGCCAATGAGGACGACATCAGACGTGTCTTAGAGGCAGCAAAGAGGGCCAACCTGACGGGTCACTTCCTTTTTGTGGGCTCTGACAGCTGGGGGGCCAAGAGCTCGCCCATCCTGGACCAGGAGGATGTGGCTGAGGGGGCTGTCACCATCCTCCCTAAGCGGGCCTCCATCGACGGGTTTGACAACTACTTCACCTCAAGatctctggaaaacaacagaaggAACATCTGGTTTGCTGAATACTGGGAGGACGACTTCAAATGTAAACTGACCCGAGCAGGTATCAAGTACGACCTTGGTAGGAGAAAATGTACAGGTGAAGAGAGAATCGCTCAGGAATCTCAGTATGAGCAGGAAGGGAAGGTACAGTTTGTGATTGACGCGGTGTATGTCATGGCCCATGCCTTACACAGCATGCACCTGGACCTCTGTCCGGGCTCCATGGGTGTCTGTGAGAAGATGGACCCAGTGGAAGGGAGTAAGCTGCTCCAATACATTCGCTCAGTCAACTTTAATGGCAGTGCAGGGACTGGGGTCATGTTCAATGAGAATGGAGATGCTCCTGGTCGCTATGACATCTTCCAGTTCCAGCTCTCAAACACCACCAACCCTGGCTACCGGTGTATTGGCCAGTGGACAAACTATCTGCGACTCAATGCTGAGGAGATGCAGTGGTCGGGTGGGGACAGTGCAGTCCCTGACTCGGTGTGCAGTTTCCCCTGTGAgttaggagagaggaagaagatggTGAAGGGTGTGCCCTGCTGTTGGCACTGCGAGCTGTGTGACGGATATCAGTACCAGCTGGATGAGCTAAACTGTGACATGTGTCCCTTCGACATGCGTCCCATGCCAAACCGGACGGGCTGCCGATCCACACCCATTATCAAGCTGGAGTGGAGCTCCCCCTGGGCCATCATCCCTGTGTTCCTGGCTGTCTTGGGCATCTTAGCCACCTCTGGATGCATCATCACCTTCATCCGCTTTAACAACTCCCCCATCGTCCGGGCCTCCGGCCGGGAGCTCAGCTATGTTCTCCTGACAGGCATCTTCCTCATCTACCtcatcaccttcctcatgatcgcAGAGCCCAGCGCCCCAGTATGTGCATTCCGCAGGCTGCTGCTGGGCCTGGGCATGTGTATTACCTACTCAGCTATGCTCACCAAGACCAACCGCATTTACCGTATTTTTGAGCAGGGCAAGAAAGCAGTCACGCCACCTCCGTTCATCAGCCCTGCTTCTCAGCTCATCATCACCTTTATACTCATTGGAGTGCAGTTACTTGGAGTTTTCATCTGGTTCGGAGTGGTGCCCCCACACACCATCATAGACTATGAGGAGCAGCACCCGCCCAACCCAGAGTTTGCACGTGGGGTCCTGAAATGTGACATGTCCGACCTGGCCCTGGTCCTCTGCTTAAGCTACAGTATCGTGCTGATGGTGACCTGCACTGTGTACGCCATCAAAAGCAGAGGGGTGCCAGAGACCTTCAACGAGGCGAAACCCATTGGCTTCACCATGTACACCACCTGCATCGTGTGGCTGGCCTTTGTGCCCATCTTCTTTGGCACAGCCCAGTCTACTGAAAAGATGTTCATCCAGACCACCACCCTGACGGTGTCCATGAGCCTGAGTGCCACTGTGTCGCTCGGCATGTTGTACATCCCTAAGGTCTATGTCATCATCTTCCTTCCGGAGCAGAACGTGCAGAAACGCAAACGCAGCTTCAAGGCTGTGGCTTCAGCAGTGACCACACAACTCTCCCAGAAAGAAGACAAGCAGAACGGAGAGTCCAAAAGTAGCGCCATAGTCCCTGACAGATCACAATAACCCAGCAGGAAACCAGAGATGAATGCGACACATGGCGCCTTACAGATGACagcttagcatggtctctcttGGCAAAGCACAGCTTTTGATCAATGGTGAAGGCTACACTGTCACATGGTTGGGATGGAAATGAAAAGGAGACGCTAACTTTGTCATTCTAAATAAACACTGACTGACTCGCAACAAGTGCTGTGACCTGACTGTAAACGGAACAGTTGATACATTGGATCATCCTCCTGGATCATCCTGATTCCTGAACAGAACACAATGAACATTGTAGACAGCTTTGCCAGACTTCAGGACACAGTGTCTCCTTTTACAGTAGGATATCTCAAATTGACCATGGCAATGAAATAGTCTTCTTTGATTTTTCTCCTCAGGACAATTATTTGGGTCAGTAGTTGATCAAATGATAAACCTTTTCCCGACTGGATGATCCAAAGTGGGATATTTTGAAAACAATGAAGCTTTGTTTGCTTGATTTATCAGCACTACATGGGTTGTGTGTACATTATATGAATGCTTCCATAGTATTGTGTGTATGAGTGTTACGACTTTGACTCGTTCTTTTTTACTGATTTCACCGGAAGGAACTAGCTTTTCTATACACTACTAAATCCTGGAATACGTGTAGGGTTCATGGAGGACATACTTTTAAAGAGAGAAACAATTGTAGGGAATTTTGATTACTGACGTCAATACTACCAGATCAAACCTCATGTAAGGGACCAttttaatataacatctacagtaAATGCTTTTGTTCGGTGTTAATTGTTTTAGTGGTAATGACTTGTATATGCTGCTGCAGTCTCTCTATACAAGAAACCATTGATTCTGAACAGGATATTGTGTTTTGTAAGGCACCTGTCACAATTGCGTTGTTAGAACAACTTATGGTAGACACTACACAATGTATGGCAGTTCCCTAGATTGTTCCAAATATCTTTACAGTGCTGCTGGGGTTGTGATAGGGAGAACAGTTATGGTAACACTAGATTTCACTGGGAATATCATTTGTATTTCCAATGCCTACTTTTGTTCGTCAATATTGTGCCATAAAATCACAGGTTTGTGGTATCAAAATGTTACAAGTTTCCCTTAATTTAAATTAGTGATTTTATGTAAACCTATTTGTAAATGAATATTGTGGCACCATAATGGTCCACAAAACCACGATAGCCCAGTTAAGGTCACATTTCTAGATCACAGAACGCATGCAGCATTCACTCTGTGCTGAGTTTGAGTTTCTATTTTGTGAGTTCGAACGCCATGCAGTGGTGGCTCAGTTTGCAACAATGTTATTTGCAGTAAGATAATGTTTTACTTTGCCGGGGTTATGCTCAGGCTAAGGGAAAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1701183 lncRNA upstream 2692 75007466 ~ 75012176 (+) True G1487838
TU1701143 lncRNA upstream 69751 74944899 ~ 74945117 (+) True G1487813
TU1701139 lncRNA upstream 84971 74929682 ~ 74929897 (+) True G1487809
TU1701119 lncRNA upstream 115184 74899433 ~ 74899684 (+) True G1487790
TU1701107 lncRNA upstream 139479 74875182 ~ 74875389 (+) True G1487778
TU1701338 lncRNA downstream 4529 75038997 ~ 75039259 (+) True G1487973
TU1701344 lncRNA downstream 8469 75042937 ~ 75043140 (+) True G1487979
TU1701377 lncRNA downstream 39302 75073770 ~ 75074016 (+) True G1488009
TU1701391 lncRNA downstream 50403 75084871 ~ 75085268 (+) True G1488022
TU1701392 lncRNA downstream 50996 75085464 ~ 75085762 (+) True G1488023
XM_036950663.1 mRNA upstream 555 75000076 ~ 75014313 (+) False LOC110494575
XM_036950660.1 mRNA upstream 555 75000077 ~ 75014313 (+) False LOC110494575
XM_036950661.1 mRNA upstream 555 75000077 ~ 75014313 (+) False LOC110494575
XM_036950662.1 mRNA upstream 555 75000077 ~ 75014313 (+) False LOC110494575
XM_036950664.1 mRNA upstream 555 75000077 ~ 75014313 (+) False LOC110494575
XM_021569765.2 mRNA downstream 9437 75043905 ~ 75050060 (+) False mon1a
XM_021569766.2 mRNA downstream 10577 75045045 ~ 75050060 (+) True mon1a
XM_021569767.2 mRNA downstream 18410 75052878 ~ 75071027 (+) False mst1rb
XM_036950674.1 mRNA downstream 20806 75055274 ~ 75071428 (+) True mst1rb
XM_036950676.1 mRNA downstream 144538 75179006 ~ 75259755 (+) True LOC110494580
TU1700469 other upstream 605679 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 1035433 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1732849 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1889512 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1969280 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 1649131 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 2973822 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 2983900 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3154544 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3154544 78189012 ~ 78190290 (+) False G1491963

Expression Profile