RNA id: XM_021569767.2


Basic Information

Item Value
RNA id XM_021569767.2
length 4571
RNA type mRNA
GC content 0.53
exon number 21
gene id mst1rb
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 75052878 ~ 75071428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGCTACACTGTATGACTAGTGCGCGCCAAGAGGAGGGGCGTGCGTTCCCTCATTTTAGGAGTACTGCATGTCGTCTATGGTTCAACTTGTGCATGGAATTATTAAGAACTGTTTACATTTTTGAATATACTTTTTTGAATAGGGTAGGCTATATTATTTGGGAAAATTCAGGCTCATGTAATGCTGTATTAGAATCAATAGGCCTATCGGTGGAGTGAAAAAGTAGGCTTACATGTTCAAGTCCGCGCGCCGTCAAGAGTTTGGCAATGCAGTCAGAGCCAAATGAGAGATTCGTGATCTATTTTCATTAGCTCAAACAGTCTCCTCAGAGATCTGCAGCTGGTCTCAATAAGGATGACATTGTCCAACCATCAGACCTGGAGGTAACCCAAAGACGTCAGtgctcccttctctctgtgtCCCAGATTGGAGATGGTCCACTGGGCCACCCAGTGGTTGACATGTGTCTGGCTCCAGACTGTCCTGGCCTCCACGTTGGACACCTGTCCCTCCACAGCCCCTAGCCCTGTCAACTTCTCTGTGGCCTACACCATGCCCTTCTTCCAAACAAAAAGCCCCATCCAAAACATAGTGACCAACTCAATATACCAGGAAGTGTATGTTGCATCTCAGAATGTGGTCGAAGCTGTGAACATGAGTTTGGAGAAGGTGTGGGAGCTTCCTACAGGCCCTGTGGGCAGCCCTGAGTGTAAGATTTGCAATTTGTGTGATGTTGACAAGGATCCCAACTTCCTAGAGAACACTGACAATGAGGTATTGTTGTTGGATACGTTCTTTATGTATTTATATTCTTGTGGGAGTTCTCAATATGGTGTGTGCCATTTTCACCAACTTAAGACAGATGGACAAGCACCCAATAATAATTCTTCAAAATGTTTATTCAGAAAAGAATCTAACTCTGCTGCCTATTGCCCTGACTGCCTTGCCAGCCCGCTGGGCACCAAAGTCACCATGGTGGAGGAGGGGCAGACTGTATACTTTTTTGTGGCTGCCACTGTCAACGACAGTGTTACACAGAGATATGGCAGGAAGTCCATATCAGTGCGCCGACCATTGGCAACAGAAGATGGGTTCTACAGCGATGTGCGGGGACTGACCGTTCTGCCTAACCTGCGCAGGACCTACAACATTGAGTATGTCTACAGCTTCTTCACCCAGGAGTTTGTCTACTTCCTGTCCGTCCAGAGAGAGAGCCCTGACCAGGAGTTCTCCCCGTTTCAGACTCGGCTGGGCCGCCTACCGAGGAGCGAGTGGGAGATGAGAAGATACCGGGAGGTGGTTCTAGAGTGCCGTTTCGAACCCAagcggaggaggaagaggaacacGGTGAGCGGGAGCGAGGCCTTTAAGGATGTGGTTTACAATGTGGTGCAGGCAGCCCACTTTGGGAAGGCAGGCAGGGAGCTGGCAGATGAACTAGGGGCAGAGGAAGAGGATGACATCCTGTATGGAGTGTTCGCTGTCACAGATGACAACGGGGTCACAGAGCACGACTCAGCCCTCTGTGCCTTTCCCATGGACAACGTGAACAAGGCTATCGATGACGGGGTGGATGACTGCTGTAAGTCCGGCCCAGAACAGCTGTCCCGGGGACTGTGCCACTTCCAGGCCTGCGAGAGCTGTCCTCATGAGAGCATGGAGAACAATGCCACCTGCAGGGACCACCCCAGCATGGTGTCTAAGCCTTATTACAGAGTGGACCTCTTCAACAAGCAGATGAATGATGTCCTGCTCACCTCACTGCTGGTCACCACCATTGAGAACAAGACCGTGGCACACATTGGCACCTCCACTGGACGGCTCCTGCAGCTTGTTTTGAGAAGATCAAGCCCTACTATCTTTGCTAATTACACCTTGGTAGAGAACCAGAGGGTCTCCTCCATTGCTGCTGTGTACTCGTCAGAATCTCTACTGTTTGTGGTTGGAGACAAGGTGATCCAGGTGCCTCAGAGAGGGCCAGGCTGCCAGCACTTCATGACCTGTGCAATGTGCCTGATGGCCCCTGAGTTCATGGGCTGTGGCTGGTGCTCTGGAGTGTGCTCTTGGAAGGAGGAGTGCAGTGGCCGCTGGAGGAATGAGTCTTGCCCCCCTGGTATCACCGGGTTCTTCCCCAAGATGGCTCCCCCTGATGGTCAGTCAGAGCTGACTCTGTGTGGCTGGGAGTTCCAGTCTCCCCTGAGGCCTGCCATCAGCTCCAGAACCCACCTGGTCAGACTGGGACAGACAGCCTGTGCTGTGCTGCCACTGAAGAGCAACAACACACACCTGGTGTGTAAGATTCGCTCTGGGGCCATTGAACTGTCCAAACCAGTTAACATCACTGTAGAGGTGCAAGAGGGGAAGGTGGAGGGCCGCTACTCCATCGACGGGAACGCGGAGATGCCAGGATTTACCTTTGTGATTCCCAACATCACAGAGATCCAGCCCAACTATGGGCCACGTGTTGGGGGAACTCTGATCACTGTGACTGGGCCTCACCTGGACGCTGGGAAGACCAGAAGGGTCACTCTGAATGGAGAGCCCTGCCCAATCACCAGTGTCACAGCGCCCAGAGGGAACATGTCCTCCATCatctgtctgtctcagcccatCTCGGAGGTGAGGGACGTCCCCCTCAGTGTGTTCATAGACAAGTCCCCCGTCCTCACCACCAAGGTCTTCTACTACAAAGAGAACCCCGAGGTCACAGCCGTCCTCCCAGACTGTAGTTTTGACAGGGGGTCAAAGATAATCATTGAGGGGAAGAACTTGGACTCTGTATACAGGACCATCATCCGCTTTAGGCCCAATGAGAGCCACCTGAAGCCTGTCACCAGAGAGTGCACAGGCAAGTCGTTGCCCACACGGATGGAGTGCATAACCCCTGCTTTCCCCcgggaagagacagaggaaggggagCTCTCCTTTGATATGGATGGAGCTGTTGGACTGTGGAATGGAGAGTTCTCCTACCACCCCTATGGCGAGCCAATACCCTTTGAAACTGACGGCCATGTACTTAGGCTGTATGCTGGACAAGATGAAGTGTCACTACATCACCAGAAACTGAATCTTGTGAGTTCCTGCATGACAATCACTATGACAGTGGGAGGAGTGGATTGTGACGCGAAAGTTCTGGACAATGAAATCACCTGCAGGATCCCTAGAAACGTAACCATCAGTGGACTGCCTGTGAAGATTTCCATCAATGGGCAGGTTCACAACGTTGGGACAGTGGTCCTGGTCAGTAACCACTACATGGTGGGCATCGTACTGGGGATACTGGGGGCCCTGGTGGCGGGGGCCGTGCTGGCCTTTGTAGTCATGAAGCACCTGAGGAAGCAGAAGAAAGCCTCTCAGGTGGAGACCCGTTTGGCTCATAACCACAACCGCCCCGGCAGCAGTAGTGTGGAACTGTCACCTGTAGGGGACTACAGAAGAGTAGTCCTGCCTCAGAGGCCAAGTTCGGCTCTGGGAAGCCCAGTGGTGTTCCCCAGCCCGGCCTATGCTGCAGGCAGCATGGACCCCACCCTCACCCCCCTCATGCCCCCTGAGAAGATCTCCATCTCcagctttagaccagagctcctGGAGGAGGTGAAGGACGTGCTGATCCCAGCAGACATGCTCATCGTCCAGCaccaccagatcatcggcaaggGTCATTTTGGCACAGTTTACCATGGCTACTTCACAGACCATAACAACAGAGAAATCCACTGTGCAGTCAAGTCATTGAACAGGATAACAGATGTAGAAGAGGTAGAGCAGTTTCTGAAGGAGGGCATCTTGATGAAGGGGTTCCATCACACCAATGTTCTCTCTCTGCTGGGCATCCTGTTGCCTCAGGAGGGGCTCCCCCTGGTGGTACTACCTTATATGAAGCACGGGGACCTCCGCCACTTCATACGCTGTGAGAAAAGGAACCCCACGGTGAAAGACCTGATTGGCTTTGGGCTTCAGGTTGCCAAGGGGATGGAGTACTTAGCACATATGAAGTTTGTGCACAGAGACCTCGCAGCACGCAACTGCATGCTGGATGAGTCGTACACAGTGAAGGTGGCAGACTTCGGCATGGCCAGGGATGTGTTCGATAAGGAGTACTACAGTGTTCAGGACCACAGGAAGGCCAAGCTACCAGTCAAATGGATGGCCATTGAGAGCCTACAGACACAGAAATTCACTGCCAAGTCAGACGTATGGTCCTTTGGGGTTTTGATATGGGAGATGTTAACCAGAGGAGCAAGCCCCTACCCAGAGGTGGACCCCTATGACATCACACATTACCTGCTGAAAGGCAGGAGACTCCCCCAACCACAGTTCTGTCCTGACCCTTTGTATGCCATCATGCTGCAGTGCTGGGACCCAGACCCAGAGATGAGACCCAGCTTCGCAACGCTGGTGTCTGCTGTCCTGACCATCCTGTCTGGCCTTGAGGGGGAGCACTACATCAGCCTCAAGGTCACCTATGTCAATCTGGACCAGCCACGCCCCTACCCTGCCCTCACAGAGTCCGCAGATGAGTGTGATTCCACAGACACTGAAGACACACGCTCAATGTCCTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1701344 lncRNA upstream 9738 75042937 ~ 75043140 (+) True G1487979
TU1701338 lncRNA upstream 13619 75038997 ~ 75039259 (+) True G1487973
TU1701183 lncRNA upstream 40702 75007466 ~ 75012176 (+) True G1487838
TU1701143 lncRNA upstream 107761 74944899 ~ 74945117 (+) True G1487813
TU1701139 lncRNA upstream 122981 74929682 ~ 74929897 (+) True G1487809
TU1701377 lncRNA downstream 2743 75073770 ~ 75074016 (+) True G1488009
TU1701391 lncRNA downstream 13844 75084871 ~ 75085268 (+) True G1488022
TU1701392 lncRNA downstream 14437 75085464 ~ 75085762 (+) True G1488023
TU1701399 lncRNA downstream 21862 75092889 ~ 75093293 (+) True G1488028
TU1701649 lncRNA downstream 207591 75278618 ~ 75284031 (+) True G1488273
XM_021569765.2 mRNA upstream 2818 75043905 ~ 75050060 (+) False mon1a
XM_021569766.2 mRNA upstream 2818 75045045 ~ 75050060 (+) True mon1a
XM_021569757.2 mRNA upstream 18410 75014868 ~ 75034468 (+) True grm6b
XM_036950664.1 mRNA upstream 38565 75000077 ~ 75014313 (+) False LOC110494575
XM_036950676.1 mRNA downstream 107979 75179006 ~ 75259755 (+) True LOC110494580
XM_021569796.2 mRNA downstream 820580 75891607 ~ 75895493 (+) True arl6ip5a
XM_036950685.1 mRNA downstream 935156 76006183 ~ 76046166 (+) False mitfa
XM_036950686.1 mRNA downstream 935158 76006185 ~ 76046166 (+) False mitfa
XM_036950687.1 mRNA downstream 968985 76040012 ~ 76046166 (+) True mitfa
TU1700469 other upstream 643689 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 1073443 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1770859 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1927522 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 2007290 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 1612572 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 2937263 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 2947341 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3117985 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3117985 78189012 ~ 78190290 (+) False G1491963

Expression Profile