RNA id: XM_036950676.1


Basic Information

Item Value
RNA id XM_036950676.1
length 3898
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC110494580
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 75179006 ~ 75259755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCCCGAGCTGAACTCGAAGCGCGAGGCACTACCGATGGTACACAGGAGCGCTGGAATTTCCCTAGAAAAAAGTACTAAGTAGAAATAGCGTCATATTTGCAGTTACACCCTAATGTGAACAGTCGAGTGGAAAAAGTCACGGGATTCTACGTTTGAGAAATTTGCTGATAAGggcaagAGTGGCCATGCCATTTGGCTGTTTAACGCTCGGGGAAAAGAAGGATTACAACAATCCCTTAGAGGTGACTGATAAATATGACCTGGGACAGATTGTTAAATCGGAGGAGTTCTGTGAGATCTTCAGGGCCAAGGACAAAAACACACTGAAAATGTTTACTTGTAAAAAGTTCTTGAAAAAGGATGGGAGGAAAGTTCGGAAGGCTGCAAAAAATGAGATCCTCATTTTAAAGATGGTGAAGCACCCCAATATTCTCCAGCTGGTGGAGGTCTATGAGACCCGAAAAGAGTATTTCCTCTTCCTTGAACTTGCTACAGGCAGAGAGGTATTTGATTGGATCCTGGACCAGGGCTACTATTCCGAGCGCGACACCAGTAATGTGGTCCGTCAGGTGTTGGAGGCCGTCGCCTACCTTCACTCCCTGAATATTGTCCACAGGAACCTCAAGCTGGAGAACTTGGTGTACTTTAACCGCCTGAAGCATTCCAAAATAGTAATCAGTGACTTCCACCTGGCCAAGCTGGAGACCGGGCTCATCAAAGACCCTTGTGGAACCCCAGAGTACCTGGCACCAGAGGTGGTTGGGAGACAGAGATACGGCATGCCAGTGGACTGCTGGGCCCTGGGTGTCATCATGTACATCCTGCTTTCAGGCAACCCTCctttctatgatgaaactgatgaTGACGACTATGAAAACCACGACAAGAACCTGTTCAGGAAGATCTTGGCTGGGGACTATGAGTTTGACTCTCCATACTGGGACGACATCTCAGAGTCAGCAAAAGGCCTGGTAACCCGTATGATGGAGGTAGACCAGGATCAGAGACTGACTGCTCAGGAGGCCATCAACCATGAGTGGATTTCTGGAAATGCAGCCTCAAATAAGAATATTAAGGATAATGTCTGTGCACAGATAGAGAAGAACTTTGCCAAAGCTAAGTGGAAGAAAGCAGTGCGGGTCACTACCATGATGAAGCGACTGAGAGCGCCAGATAAAGGTGTTGACTCGGGGACTCCCGGCCCAGCAGTAGCAACCAGCCCTGCAGCAGGAGAACCAGCCCCAGCTCCAACAGACCCCCAGGCTCCCAGTGACCCCTCTGCAGCCCCCGCTGCTGCAGCTCCTGAGGGGGAGCCTGCTGCTGTCACAGAGCCCCCTGCTGAAATGGAGGCCGTGGCATGTGATGTCACTCCCCAGGCTGCAGCAGAAGTCACAGCTCCACCTAAGGAGGAGGCCAGCTCAGCGGAGGCCCCAGTGGAGGCCCCTGCCCCGGAGGAGGTTGATCTTTTGTCGCGGTGTAACGGAGAGGCCCCAACTCCCCTCCAACCGGCTGCTGAAGCTGGGGATGAGCAGGTTTAGACAGCCACCGCCCTCCTATGCCACCTTCACTCCCAGAGATCCTCCTTCCTGCACACTGTACATTAGCTGCTAGCATGGTGACACTGACTCTGCTTATCTCTCACTTGCAGCGTTAGTAACATCTCACAGAGCCTGTATGCTATCTTTCCTGAGTGTTGAATTTATCTGGCTACATTTTTATATGTATTCTGTCTTTTTAAAACAGCCCTCTGGCCTTACAGGGGCTTTTTATGTCTAATGCAGCCCAGATTATGCCATATTatgttgttttttgggggggaaaggaGGTTTACGTTATAGCTAACAGCTACATATTTTCCTCTGGACTTTTGCCTTTTGTAATGAAAGTGTAATGTAATTATGCCAAACCTGCTTTGATTTCCTCTTAATGAAACATGTTTGGGAACTTTTCCCCCCGTCCTACTCTCATATTATTCCACTCCATTATCATGGCAGTCAATAAGGTAATGAACAGCTTGGCTTTGCTCTTGTAGTGTTGATTTGACATAATGATCTGTAAAACTCCTCCTTCACACCCCCCTCTAAACaatgatagattttttttttttggggggggggtgaccattgatctctttgttattttttgtaTACACTGATCAGTAGTTATGTTTGTGCTGCAGTACGGTAGGTTTACTGGGGGATGCAGCAGGCCCAGTGTTAGTGAAGGTCAGTATCCACGCCATTACCACCCATCTGCTTAGGAAAGAACCACATGGCTGTCAGTGTAAAGATTCTGTATATAGAAACCTTTGTAGAAGTAACAAAAACAGCATGTATTCTTAACTTTCGCTGTTAATTTCACATTTGTAAGCACTTGGTTAAAACAAAATACATACGAATCCTGCTACTGACCTTTAAACTGGAAACATGAAGGTATTTTGTAGCTCTTTATGAGTTTCACAATTGGCCTCTGTCCTAACATATCCATCCTATGTGACTAGATTCACTTTTTCTATGTCTTTAAAATGTGTTTTACATTCTGTTTCTGATTCACCACTTCACCTGACTTATTCATTCTTCTACATCCTTAATACGTGGATGTATTTATAAAGAAATATAATTTATAATTTAGTCTACAAGGAAAACTGTTACATACATATTTCTGTGTAAAAGCACCACTGtaaaaggcatttctgccccccaCCAGCTTTGTGACACGTTTTATGTTGCTTAAAGGAAACAGAAGAATTAAGAGCAATTGTGTTAAAACATCTTTAATATTTACAAAcatgtgtatttatttatctatttattcATAGGTTTACTTATTCTCAAGATATTCATAACAATATTATGAAACAGAATAGTTGTCGGTTTATAGCCTGGCTCCCTTCAGTATGGTCGATAATAAGGTATGCAAGAGTTCTCTGTAATCGCCATACATTTTGCAATATTCAACTTGCTGCCGAAACTGTGATTATTCTCTTGGTGTCCTATATAGAGTATAGTTCCCCATAGagtgcatgtacagtacatacctgTAAGTTGAAAGCCTGTAGTCCGTAAGAACCGTCGATACCCTATCCAGATGGCCAGTCAATAACACATGGCCAGTGTCAAACAAGGCCGAGCCTAGATCATATTAGTCATGCTTGACTTGGTCCCCCCTCTTTCTGTACTGTATTTACAGTGGCATCCTCCATACAGCCTTCATCCTTCCTTGTCACAGCTAGACAGTGGTTTTATTAACAGTACACAGTAGctataatatacacagtatattcATGTGTTTTATGAGTCCCTCTGCAGGTTACTTTTCAAGGGACTAAGTTTTATGGAATATGTATTTAAGAAAATTTGGAGCAATTATTTTCAATAGAATGCaggaagtcaaatcaaatttgctCCTTTTCTGAAGGAACAGAGATAAGTTATTGCTCCCCAGACTATGGTTTATTCACATCTCTATCTACGAAAaggtattgattgattgatatgcaTATTCAGAAACATTATTGAGATATAGCATTACACAATGTCTTTATTTTGTCAAAACATTAGATTTCCCACGAAAAGCTTAACAGGAATATCTGAAATAAGTTGTGTGAATATACCATTTTGTGTCATTCATCCTCTTAAGACCACAaataaatactgttacacaaTCTAAAGCAATGCTTTGTTTCAGTGCCACTGTATGTAGTGTTCCACATCTGTTCATTTCTCCATGCACTTTCTGATGTACCTGTTGTTTTTGATGTAATGTTCATCAGGACCAGTGGTCACCTGTAGGTTCTGACTGTTTCTCATGTGTAAGCTCTGTACTGTACTCGTTGACTGAGTTCATGACTTTGATGGTAATAAAAGTTTACCCATGGAATATCTGTGGCTATCTCA

Function

GO: NA

KEGG:

id description
K08812 CAMKV; CaM kinase-like vesicle-associated

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1701399 lncRNA upstream 85713 75092889 ~ 75093293 (+) True G1488028
TU1701392 lncRNA upstream 93244 75085464 ~ 75085762 (+) True G1488023
TU1701391 lncRNA upstream 93738 75084871 ~ 75085268 (+) True G1488022
TU1701377 lncRNA upstream 104990 75073770 ~ 75074016 (+) True G1488009
TU1701344 lncRNA upstream 135866 75042937 ~ 75043140 (+) True G1487979
TU1701649 lncRNA downstream 18863 75278618 ~ 75284031 (+) True G1488273
TU1701682 lncRNA downstream 58064 75317819 ~ 75323092 (+) True G1488304
TU1701683 lncRNA downstream 58222 75317977 ~ 75322996 (+) False G1488305
TU1701684 lncRNA downstream 58222 75317977 ~ 75322996 (+) True G1488305
TU1701707 lncRNA downstream 90963 75350718 ~ 75352160 (+) False G1488325
XM_036950674.1 mRNA upstream 107578 75055274 ~ 75071428 (+) True mst1rb
XM_021569767.2 mRNA upstream 107979 75052878 ~ 75071027 (+) False mst1rb
XM_021569765.2 mRNA upstream 128946 75043905 ~ 75050060 (+) False mon1a
XM_021569766.2 mRNA upstream 128946 75045045 ~ 75050060 (+) True mon1a
XM_021569757.2 mRNA upstream 144538 75014868 ~ 75034468 (+) True grm6b
XM_021569796.2 mRNA downstream 631852 75891607 ~ 75895493 (+) True arl6ip5a
XM_036950685.1 mRNA downstream 746428 76006183 ~ 76046166 (+) False mitfa
XM_036950686.1 mRNA downstream 746430 76006185 ~ 76046166 (+) False mitfa
XM_036950687.1 mRNA downstream 780257 76040012 ~ 76046166 (+) True mitfa
XR_005037081.1 mRNA downstream 813308 76073063 ~ 76088669 (+) False zgc:113054
TU1700469 other upstream 769817 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 1199571 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1896987 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 2053650 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 2133418 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 1423844 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 2748535 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 2758613 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 2929257 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 2929257 78189012 ~ 78190290 (+) False G1491963

Expression Profile