RNA id: XM_036950687.1


Basic Information

Item Value
RNA id XM_036950687.1
length 4226
RNA type mRNA
GC content 0.41
exon number 9
gene id mitfa
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 76006183 ~ 76046166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagggtatataacaaattgTATAAAACACAAGAAAATCACACTttggactgcactgggcctttaacaaaCTTGTACAATGGTTAAATAAACCTGGAACAAACATATTATTGTGgtttttcatatatatccaaggGCTACAATGTATAAAGGACGATAAAGACAGATTAATTACTGTATAGTGCTACTGGTCAAGCATGTGCCTTGTGGAGTCTTTCTAAGTTGTATTTATGTTTTGCTAAGGGTTCCTTCTTCATTCTCAGTATACACAGTCTTTCTCAGGTAGATCTGATTGGTCAGTGGTGAGGGTGTGGtattagcctttatttaactaaggcAATAGACACTGATATGTGCACAGTCTGCACACACATGTATCTACAttctgtgtgatgttttaaaGAAGTACATTCAAGCAAAACAATACTTTAATGTATGACAACTTGATTACTATGACCTGTGTGAAAGCATGTATGTATAGGCATCCACTGTATGTGCTTAAGGGTGCAAGGAGTGGCAACATAATATACTGTTGACAGGTAGCTAGAGAAGAACTAAATCTAATTACTAATAgttatgtggagagagagagcgatagagagtgagagagagagatgtgtgcaACATCACACGTGTTGGCTCCAGGCATGACGCCTGCTGTATAACTCTAAATTACTGTCCCAGAATAATGGGCCAGCTTTGTTAGAGTAGAATGGTCAGATGTGAGCTCAACATTTATGATAATAGATTTTGGAGGAATGGGTGTTTCTAATGAGGATTTTTGGAACGATTTGTAGATTAAttgttttgatttatttttattctaCATTTTTTGGTTGCATATTCCTCTATACTAAAAATGAATAGTTCTATAAATTAGCTAatattttctttgttttttgcATAGTGGAAATCCCAGTGGGCATATAGACTCACACTTTGCTCATAGCTTCTATACACATGCAGAGACAGGCCAAAACCAGTCAAAACCAATGATCTTTCTATAGAAGGGTGTGAGAGTGAGAATATGCTGTTTATATGAATCTTAACTGAtcatttatatacagtacagttgcCCCTTGTGTTAGATACAACTACTTATattgtctttatttatttatatttgacaTGGTTTTGGAACCATGAATGGCCATGTGTCTTCTGAAAACCAGATATAACAAATGTCACTAAGCAGTGTTGAAATTTATTAGCATACAGGCCTAGTGATCTGGATAAACTATTGAACTTTGGCATAgattaatgttaatgttaatgttcctAATTACACAGTTATATTTGTTTCTGGTAATGTCATATTCCAGAGGTTTCAAGCCAGCAGTGATTCCATTATTGTGCCATGCCTGTGgcacattttttgtatttttaaccCTAGTGGCCTCTTAAGTGGCAGACTAAGTAGGAACTGGCTATGACTTAGTTGATTAGTGGATCCTGGCACACCATTTGCGAACCACTCAGACTAGTGCTTAAATACTTAACACCAAAAGTTGGTAGGGGGATGGACAATCTGTTTAAAAATGCTGCTACATTTTGGAATTTATCTTTTCATATGCTCTGTTTGTAATGGAACAGTGGTGTCAATTGTATTCCGTGTTCTCAGAACAAATTATGTTTTATACTAGATGAGCGGAACTAAAGATGAAACGTTAGTTAGCCGTGAGCGAGTTTCAGTTTGGAGACTAGTAACCCACCAGCAGAAAGGGTCCTTTGTGAGACAGAGATGTTGACGTCAAATGAACCCTGTGAAGACATAAATTCTCAGTTTAACtagaacaacacaacacagggaGGATGAGCCCTGGtatcctccccctgtctcctaaCTTACATAACTCATGAGGGGTTTTCCTTTAATAAGTTCAACCGACCAAGTCTGTCCTCTTATTTTCATGTTAGCCCTGTGTCCACACAGTTGACTGACCAGAACAAGGGAATATCTGATACATACTATCATACAAATTACAATATGTTGGAGATGCTTGAATATAGCCATTACCAGGTACAGACACAGCTGGAGAACCCCACCAAGTACCACATCCAGCAGGCCCAGAGGAAGCAGGTGAGGCAGTACCTGTCCACAACCCTTGGGGGTAAGCCTGGCAGCCAGGCAGGAAGCCTGCAGTGCCCCAGCCAGCCCCCGGAGCACGGAATGCCCCCCGGCCCAGGCAGCAGTGCCCCCAACAGCCCCATGGCCCTGCTGACCCTCAGCTCCAACTGCGAGAAGGAGATGGATGATGTCATCGATGACATTATTAGCTTGGAAACAAGTTATAATGAGGATATTTTTGGACTTATGGACCCAGGACTCCAGGTTACTAATACACTCCCTGTATCTGGTAACCTTCTGGACATGTATGGAAATCAAGGGCTTCCCCCAAATGGACTTGCCATCAGTAACTCCTGCCCTGGTAGCTTATCCAACATCAAAAGGGAATTCTCAGCTCCTGGCATGATGCACGTACTGGACAATACTGGATCCTATGGCCAGTTTGACAACTACCAAAGGCCTGAGGGCTTTCCAGTTGAAGCTGAGGTTCGAGCGATGGCCAAGGAGAGACAAAAAAAGGACAACCACAACTTAATTGAACGAAGGAGAAGGTTCAACATCAACGATCGAATCAAAGAGCTTGGAACCCTGATTCCTAAGTCTAATGATCCGGACATGCGCTGGAATAAGGGCACCATTCTGAAGGCCTCAGTGGACTACATCAGGAAGCTGCAGAGGGAGCAGCAGAGAGCCAAGGAGGTGGAGCTTAGACAGAGAAGGCTGGAGCATGCCAACCGCCATCTGATGCTGCGCATACAGgAGTTGGAGATGCAGGCGCGGGCTCATGGTCTTGCAATTCTGCCGTCGTCTTCCCTCTGCTCCTCTGAGCTGATAGCCCGAGCCATCAAGCAGGAGCCCATCTTAGGAGACTGTCCCTCAGACCTGTATCAGCAGCCAGGTCCCGACATGTCCCCTCCCACCACACTGGACCTCAACAACGGTACCATCCACTTTAACGACAGCCCTGTGGATGCAGGTGACCCAGGGGCATATGGCTCCAGCAAAGCATCCACTAAACTGAAGGACATTCTaatggacaacaccctgtcgccCATATCATCCAATGACCCCCTTCTGTCCTCAGCTTCCCCAGACACctccaacagcagcagcaggcgtAGCAGCAGCTCAAGCATGGAGGAGAATGATCATGGTTGTTAGCACTGCCCACAAGCTCAAATCACACTGACATTTTATAAAGTAGCATTGTTATTACTGGAGCCAACGCTAGGTGCTGCTATGGCCTATTCCTTGAGATAAAGACAGTGGGATTTTCCCTCCCATTGTGTTCAGaagttttgtcttttgtttttgtttgttttacaataTTGTGTCTCTTTCTGGAATCAAATCTGGTTGTTCAGATTAGGCTACCCTACCTAAGGTGACTGCTGAGATTTCACTGTACTGTAGCGTTCACTTTtcatgttaattatttgacaggAAGTGCACAATAACATGGCAATAATGTATTTTATGTGTaatattttgatatttttttcaTATCATGACCATTTTTTGAATTAGTTTAAACATTTGTTTTGTGAGATATcatagagaaatatatatttagTTGAATACTTAAATGAACTGATAATAACATTTCACCAAGATTTTAAGATGAGATAAGACACATTTTTACCCTTAAATTTAGAAGCAATGGTTTGAAACCTACAATATTATTTGCGACTAGAAACAACTTTCAGGAACAATGAATACAATTTGAATGAATACAACCTGTTGATGAATTTTGTTTCCGACGTGGTGATATCTAAAGTGAAGATATTTGTACAAAacaacactgtaaatatactTATTTTGTGATTTAGTTTTTTGAAGTAGGCCTTTAATTAAGTATTAAATTGAAAGTgaattcattttatttttattcccTTGGCTATCTCAACCATATCATTTAGATCGTTGCTCTTACCCCATAGAAAGTTGTAATGCACATGAAGATAATATTTTGTCCAGGTCAAACCAATGACACATATTTAGCTCAGAAGGAGCTCCTGCGACCATTGTTTTTGAATGTCAGACTGCTGAATTACTATCCCTAATATAACTTTATGATGACTAATATCaattcctaatataact

Function

GO: NA

KEGG:

id description
K09455 MITF; microphthalmia-associated transcription factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1702570 lncRNA upstream 9195 76011292 ~ 76030817 (+) True G1489120
TU1702563 lncRNA upstream 28261 76003969 ~ 76011751 (+) True G1489114
TU1702522 lncRNA upstream 51217 75948337 ~ 75988795 (+) True G1489073
TU1702463 lncRNA upstream 166573 75873205 ~ 75873439 (+) True G1489032
TU1702457 lncRNA upstream 178269 75861425 ~ 75861743 (+) True G1489026
TU1702865 lncRNA downstream 96258 76142424 ~ 76143081 (+) True G1489388
TU1702866 lncRNA downstream 96973 76143139 ~ 76143457 (+) True G1489389
TU1702955 lncRNA downstream 212945 76259111 ~ 76259466 (+) True G1489469
TU1702982 lncRNA downstream 244964 76291130 ~ 76291342 (+) True G1489496
TU1703364 lncRNA downstream 449076 76495242 ~ 76495466 (+) True G1489839
XM_021569796.2 mRNA upstream 144519 75891607 ~ 75895493 (+) True arl6ip5a
XM_036950676.1 mRNA upstream 780257 75179006 ~ 75259755 (+) True LOC110494580
XM_036950674.1 mRNA upstream 968584 75055274 ~ 75071428 (+) True mst1rb
XM_021569767.2 mRNA upstream 968985 75052878 ~ 75071027 (+) False mst1rb
XM_021569766.2 mRNA upstream 989952 75045045 ~ 75050060 (+) True mon1a
XR_005037081.1 mRNA downstream 26897 76073063 ~ 76088669 (+) False zgc:113054
XM_021569801.2 mRNA downstream 26898 76073064 ~ 76088669 (+) True zgc:113054
XM_021569809.2 mRNA downstream 413292 76459458 ~ 76463496 (+) True LOC110494598
XM_021569813.2 mRNA downstream 594181 76640347 ~ 76657067 (+) False gxylt2
XM_021569812.2 mRNA downstream 594185 76640351 ~ 76657067 (+) False gxylt2
TU1700469 other upstream 1630823 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 2060577 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 2757993 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 2914656 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 2994424 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 637433 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 1962124 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 1972202 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 2142846 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 2142846 78189012 ~ 78190290 (+) False G1491963

Expression Profile