RNA id: XM_021569801.2


Basic Information

Item Value
RNA id XM_021569801.2
length 3724
RNA type mRNA
GC content 0.45
exon number 11
gene id zgc:113054
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 76073063 ~ 76088669 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGCGCTTGACTTGGTTGAAGGTCAGCTCCATTAGACATAGCTGTGTTATACGGTTTGCGCCCACGTGATGACAGTAAAACGACCCGAAAAAACGTTGTCGCGAAAGGTTTACACAAAAAGTTTGACATCGATAGACAAATCTTACAGGTCAACGGACACGTGGGCGGAACTACTGTGTGGGAAACTAGGAGTTTATTTTGGGGAGTTTCGTAAGCCATCAGTAAAGGACATTTACACAACTGAAACGGGGTTAAGCtatatagatagacagacagctgcTTTGCCAGTCGCCCTTGTGATTTGACAACTTGTTGTGTATTTTGTATTACGAACGCCGTGGAAATTCACCATGCAGGCGGCCAAAGTCTCTGACACCCCGATGGAATTCATGGTGGATTTCTTAAACAAAGCCAAGGAGATAGCAGATAGCACTGCCAACATTCCAGAGGAACTGAGGGTCAACCTACAGAAGGCCCTGGACATAGCTTGTGGTCTGGACGGCTACCTGGAGAAAATGAGCAGCCAGGAAAGTGCACCTCTCGCTGAGCTGTATCAGAAAACGATGGAACACGACTGGGATAAAGTATTCGAGGAGGGCAAGACTCAGTTTCGGCTTCCAAAAGAGTGCATCACTGGGCATGTGGAAGGCCAGACTCTGAAAATGCTGGTTCACATGAGTAAAGCCAAGAGGATCCTAGAGATAGGCATGTTCACAGGGTATGGTGCTCTCTCAATGGCTGAAGGACTGCCCGAGGATGGGTCACTGGTTGCCTGTGAGATTGAGCAATATCTTAAAGAATTTGCTAAGCCCATATTTGACAGGTCTCCACATGGCAAGAAGATAACAGTGAAGATTGGTTCTGCCATGGATAGCTTGAAGGATCTGGCTGCAGCAGGCGAGCAGTTTGACATGGTCTTTATCGACGCAGACAAGAACAACTACATCAACTACTACAAGTTCATCCTGGACCACAACCTCCTACGGCTGAGTGGTGTGATATGTGTGGATAACTCTCTGTTCAAGGCTAAGGTCTACCTAAAGGACACCACTGATGTAAACGGGCTGGCGCTTCGAGATTTTAACCAGTTTGTGAAGAGTGATCTTCGTGTGgagcaggTCATTGTCCCCCTCAGAGATGGCATCAGTATCATCCGCAGAGTACCCATGGCAACAGCATGTGCAGGCACACAGAGCAAGGTAACAGACGATGAGGTATTCCGGGGTTTGAACGGGAGGTCGATCCTGGACCGGATGCGTCTGGATGGCAGGGTGGCCTATGTGACAGGGGCAGGCCAAGGTATAGGCAGGGCGTTCGCACATGCCCTAGGAGAGGCTGGTGCCAAAGTGGCTGTGGTAGACCTGGACCAAGGGAAGGCTGAGGGCGTGGCAGAGGAGCTCACACTGAAAGGGATAAATTGCATTGCGATTACCGCTGACATCAGCAAATCGTTAGAAGTTGAGAGGATGATTGACAGCATTGTGTCCAAATGGGGAGCGATCCAAATAGCATGCAACAACGCAGGGATCAACATGAACTCAGCCAGTGAAGACACCAGTCTGGAAGAGTGGGACCAAACCTTTGATGTCAACTTGAGGGGGACCTTCATGTGTTGTCAGGCTGCAGGTCGTGTGATGCTGAAGCAAGGATATGGGAAGATTATTAACACAGCGTCCATGGCCAGTCTAATAGTGCCCCATCCACAGAAGCAGCTTGCCTACAACACCTCAAAGGCAGGAGTGGTCAAACTGACACAGACACTTGGCACAGAGTGGATTGACAGAGGGGTCCGAGTTAACTGCATCTCACCGGGGATTGTTGACACCCCTCTCATCCACTCGGAGAGTTTGAGGCCTCTGGTGCAGCGCTGGCTGTCAGATATCCCTGCTGGACGACTGGCTCTAGTGACAGACCTGCAAGCTGCAGTGGTCTACTTGGCATCTGACGCCTCTGACTACATGACAGGGCATAACTTAGTCATAGAGGGTGGGCAAAGTctgtggtagagagagggagaagcttAATTTTTCCCACTCTTGGTTCACTCTTGGGAATAGACACCCACCGCAGGTGGCTGGTGGCACATTAATTAGGGAGACggactcatagtaatggctggaatggaatgataTGGAACACTTGGCTTCCATGTGTTTGatttcactccattccagccattattatgagccgtcctcccctcatcaGCCTCCTGTGgcgaccactgtgactgatctcCACAGGGAACACTAGAGTAACAGAGATTAGGTCAGAGTGATTACCTCCCTGGTTTACCATTATGTCAGATTGGAGATTATTTTACAGTTTCATATAGTAGTCTTCACataaaagggacatttatttccACACAGTTGTGCTTTCATATCCCTATAATTTTCTTGACAGAAATGCACACTTTGTCGAAAATCCTTTTTACTCCTTCTACATGGTGCTATCCTTTGGACATCTGTGTTTTTATACGGAAACATTTTTCACGCTGGAATCTGTGAGTGACTCTTATAAACAGGTTTTTGACACCATTTGCCCCATCAGAGGTATTTGTTTCGTAAGTGAAAAGTACTTGAAACGGGTTCATAGTTCAAGATTTTAATACACTGAATGCATGCTGCTTTCTACTGTGCAAGTGCAGTACGTACTGGATATTAGATTGTGAAAGATGGGTTGGGCATAGTAGAAAGTACTGAGATGTGTATAACAAGATACTGTACGAAATACAGTCGGTTTATAAAATAAACACTATCAAACTTAATATTGTAACTAATCCTTTCCTTGTGGGGACTACATACTGAACACATAAATATGGTTTCAAAGCTAACTAGACATTCTATGCATATAAATGTGTAATAACTCCCTGTTTGACAGTCCTGGGATGGTTGTGTTTCTCCGGGTACCATAGTGTACCCCCCTCCTTCAGCTCTTCTCTCTCATGGTTTTGCTGATTGGTCCCCCAAGTGGTGCTTACAATCCACATCTTAATTGCTCCCTGTACTGTGCTATGTGCTGCAAAACAATGCTTAAAGGAGGTTAGCTGAGGGCATGGCCTTAGTCACTGCAATTATACCAAAGGAGTGTCCAATTAGCACCATCCATGCAATGAGACGGTGCTTGTTTGTGTGAGAAACTTCTCGCTATTAGTGGCCATACTCAGATTTACATAATGGGGTCCCTTATTAACGGGGCTAGTGAGTGAGAGGATCCCGTTTAGATATGGAAAGATCTGACGATCTCTGCATTTCAGTTGGATTTAATGTAGAAGACATACTAAACCTGCATGGTAGATAGACACAACTTCCTCACAGGACAATATCAGACATTTGATTTCTGTAAACAGTAAATGTAGAATGTATCTAGAATGACCTAATAAACATCTTAATATAACGTGAGTAGAATATTAGTTAGGCATTTCGTCAGATGGCCACAAAGGGGCAGTCTAGAGATGGGGAGCTACAGATATTTGCTGTTCTCTACCTTTCAGTATACAGGATAATCACTGTTTGAATGTGGGGTTATCAAGAACATTATTTGCCATTATCCGAGGGTAGCAACAAAGGGTCTGCTATATGTTTATGTGAGTAAATTATGATTGAAATGACATCTGCAATTCTAGTGTGCAAACAGCTGGACATGGGAATGAATCTGTGTTGAAATGTTGAACAAACGCAATGTACAGTACTTTCAATTAAAATGAAACAAATAGTGACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1702570 lncRNA upstream 42247 76011292 ~ 76030817 (+) True G1489120
TU1702563 lncRNA upstream 61313 76003969 ~ 76011751 (+) True G1489114
TU1702522 lncRNA upstream 84269 75948337 ~ 75988795 (+) True G1489073
TU1702463 lncRNA upstream 199625 75873205 ~ 75873439 (+) True G1489032
TU1702457 lncRNA upstream 211321 75861425 ~ 75861743 (+) True G1489026
TU1702865 lncRNA downstream 53755 76142424 ~ 76143081 (+) True G1489388
TU1702866 lncRNA downstream 54470 76143139 ~ 76143457 (+) True G1489389
TU1702955 lncRNA downstream 170442 76259111 ~ 76259466 (+) True G1489469
TU1702982 lncRNA downstream 202461 76291130 ~ 76291342 (+) True G1489496
TU1703364 lncRNA downstream 406573 76495242 ~ 76495466 (+) True G1489839
XM_036950685.1 mRNA upstream 26898 76006183 ~ 76046166 (+) False mitfa
XM_036950686.1 mRNA upstream 26898 76006185 ~ 76046166 (+) False mitfa
XM_036950687.1 mRNA upstream 26898 76040012 ~ 76046166 (+) True mitfa
XM_021569796.2 mRNA upstream 177571 75891607 ~ 75895493 (+) True arl6ip5a
XM_036950676.1 mRNA upstream 813309 75179006 ~ 75259755 (+) True LOC110494580
XM_021569809.2 mRNA downstream 370789 76459458 ~ 76463496 (+) True LOC110494598
XM_021569813.2 mRNA downstream 551678 76640347 ~ 76657067 (+) False gxylt2
XM_021569812.2 mRNA downstream 551682 76640351 ~ 76657067 (+) False gxylt2
XM_021569814.2 mRNA downstream 551689 76640358 ~ 76657067 (+) False gxylt2
XM_021569815.2 mRNA downstream 574775 76663444 ~ 76673208 (+) False LOC110494602
TU1700469 other upstream 1663875 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 2093629 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 2791045 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 2947708 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 3027476 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 594930 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 1919621 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 1929699 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 2100343 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 2100343 78189012 ~ 78190290 (+) False G1491963

Expression Profile