RNA id: XM_021569809.2


Basic Information

Item Value
RNA id XM_021569809.2
length 4039
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC110494598
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 76459458 ~ 76463496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGGAAACGATTGAATTTGACAAGCCTTTCTAGACATGGAAAATCATGCCTTGGGAATGCATGAGACAGGATCTAATTATTGAATGATTCCATGTAGCGCCGCAGACTAATGTAGCGCACAGGAGATCGGACAACTGTTTCTGATCCGAGGACGTGGATGAGCCTACATTTAATCTATCTCGACATTAGCCGGCGCTGTTCAGTGTCTCTCCACCTTATCATAATCGATTCAACCTCGTTTGAAAACGTAAAGTGTAGGCTTTTCCTCAAATGCAAACCAACGGTTGTAGTTTATAGATATGCATTAGTTTGTATTGCTGGATGTATTCGTACGCCATGCCTTCGATTGAGTGGACTGAACAGTGGTTTGGCTATAGTCTACCCAACCCTGTTAATTGCGTGCTGAAGAGATGATGACGGCCTGTCCTCcgatgtatgtttatttattcctCAAGACGAACGAGAACCCCAGCATCAGTGGAAATGGAGATGTGTTCTTGAAATGTCTGGCAGTTAAACGGATCCATTTAAGATGGTGTGTGCAAAGACGGCATGTTTCAGAGCAATTTGTTTGCTATCAGCAGAAAATGGAACTACGAACATGGGTGTAGCCTATTTCATATTCAAAACGGAAACGTGTGAGATGAAGGATAACAAGAAAATACATTTCGATGGACCTCAGTCGCTTCTGAAATCAGGCAATGCTTCAAATCCAGGAGAATAATGAATGATATTCTAAAACGGTTAAACCCTAGATGCTGTTCACCGTGAGGTAGTGTAACATAATCGTGCATCATGTTAATTTCTTGCTGGCCAATTTTTATCAATCATTGATAGGCCTACTTCGACCGGGGAAAGCACGACCACTTGATGTGGGGATATAGAATACACGCGCCTTTGACAATAGCTTGGTTACATAGATGGCAAATTCAAGCGAGTTTGGGGAAAGCAGTCCCACACTACATAATTATGCCATCACCGCCTCTGCGGTGAAACTGGCCTCGCTCGGTCTGGTCATTTGCATCAGCCTTTTCGGGAATGCGGCGTTGTCCCTGCTGGTGCTGAAAGACATCTCCCTTCACAAGGCTCCGTATTTTTTTCTACTTGATCTGTGCTTGGCAGATGTAATACGGTCTGCCGTGTGTTTGCCGTTTGTGATGATATCAATCAACAACCGTTCCATCTGGACGTACAGCATTATACGTTGCAAAATTATCGCGTTCCTCTCGGTCCTTTTTTGTTTTCATGTAGCGTTTATGCTCTTCTGCGTCAGTGTAACCAGATACATGGCGATTGCACACCACAGGTTTTATTCCAAACGAATGACATTGTGGACATGTGTGGCAGTGATTTGCATGGTCTGGACCCTCTCTGTCGCTATGGCTTTCCCCCCTGTATTTGACGTTGGCACCTACAAATTCATCCATGAAGAGGAACAATGCATTTTTGAGCACCGATATGTGAAAGCAAATGACACCCTGGGTTTCATGTTGATGCTGGCTGTCATCGTGGGAACAACGCACGTTGTTTACATAAAAATGTTGTGTTTCGTGTACGACCATCGGAAGATGAAACCCGCTCAGCTTGTCCCAGCAATAAGCCAAAACTGGACCTTTCACGGGCCAGGTGCAACTGGGCAGGCAGCCGCCAATTGGATAGCAGGATTTGGACGTGGTCCCACCCCACCAACATTGGTGGGAATCAGACAAACTTCGCATAATGGAAACAGAAGGCTGCTTGTCTTGGatgaatttaaaatggaaaaaCGCATAGGGAAAATGTATTACATGATAACCCTGGCGTTTCTTATCCTCTGGGCCCCGTACATTGTTACTTGCTACATTCGAGTGTTTGTTAAAGGAGGCACAATTCCACAGGTCTACCTGACTGCAGCCGTGTGGATGACGTTCGTTCAGGCGGGGGCGAATCCCATTATTTGTTTCATATTCAACAAGGAGCTGAGATCGCGCCTCAGAGCCAGTTTCCCATGTTGTCTCAGCACACAGACGCCTATGTCTATGGAGCCATACTGTGTCATCTGATAGGTTCTACTGTTGTTTTAGACAAGGGGAAAAGAACAGAACTGTCATGTTGGTTTTGATGCCTTAGGTGATATTACTCTGTTGCTAAGCTTGTCCAATTTTCCCACACAGGCTGGCCATATTTTGTGATTTGCACTTACAGAAAGTGCAAAATGTTGCCAATCTGTATTTCGAATAGGCCTACTAATAATGTTGcatatttgaagaatctcattgGGATATTATTTGAGTAATGTAGGCCTATGGCAATTCAGTTACAAGAGCATAAGACAATTCTGTACATTCTCTAAAGCTGTTTATTTctgaactttaaaaaaaatcaaatatgTTGTAGCTTTCATAAAATCTTCATATAATTATTTGTGTGGAGAAGGTGATAAAACAAACTTTTACAGTCTTTTGCAAATACATTTTCTTCCTGGATTTTAATAACATGTGTTGATAAAAATGTATACCTTGCACATTCCCTGTAAAAAAGACACATGACATGTTTTTTTCTATGGACAAGGACGATGGAACTCTAAAATAAGCAAAGCAtcagtgctgcagagagatgtTTGCAATGTTTGTACTTCTGAGTAAATAAACAACAGATTCATGATTAGTATTGATTTGATTCTGTTATACAGGTAACTGAACAATATCCGTTATGTGTTTCAATCCAATAACGATATAGACACATCCTATTTTCTACCACTCATCCTCAAACGCTAACTGAACAATTGACCATATTTTGTTGTATCATTACCTCCTCTATAGCACAACATGTGGGGGGTTGTATTACCCTGAAACAATAATATAATTATACTAAAATTGGGGTATCTGGGCAGATCATGTTTTCCTTGTGCTCAGCTAACTTGTTACCATACTATTACCATGTTATTACCACTTTATTCTGCACTGTAATGTAAAATGCTACCATCATTCATGTCCCCGAGAATTTAGCAGGCCTTAGAAAGTTTGTGCTTCTGAAAAAGCAGTGCAGCAAGAGTCCAGTTTGCCTCTGCTTACACACTCCATTGTTCTCATAAGACTTTAACTAACCAGCATGCACCTTTCAGTATGTAAAAAATCCAACCGTGTATAATAGAGTCATTATTCTGATCACTGCTCATCTCAGTTACAGGCATGTAAATGAACATTTGTCAGCTAACTGTAGTCCTTAATCTTTGTAGCCCGGGTTGACTTCCCTAGGGGGAAGTGGGATAGAGTGGGAACTGCTGAGCTGATGTTTCTGGGTAGAGCATCCCGGTGTACCTACAGTATACCTACTGTGCACCCTCCTTCCCTGGCCTGGCCCGGCCCAGCATCACTGCATTCATAACCATTACCATCACAACATGCCTGCTCCGCTCTACTCCCAGCATGACTCTGTTGCTTCTGAACGACTGAAACGTTCTCACCTGTGAATTCTCTCATGCAGTATAATTTCAGATCAGACATTTTTTATACAACAGCTCTACCCCAGGAGAACTCTCTCTGCTGCTTTGTTTTGCTTAGAAGTGCCTCTTGAACATTTTTGCATGTACACGGCCATATTGTTGACCCCACATTTGCCTCTGTTAGTTTCTCAGAGGCAGTTTTGCACACCTGAAATATGTTCAAAATGCAATATAACATTTCATCCCCAGAGTAAGTTCGGATGAAGTCTGAGTTATTGCAAAGAGTTTATGGTGCCATTGTCTGAATATACCTACATTGAAATGGCAGGGCTCTACACGTTGTGGCTTATACAAGCCAATGTCATAATTGTATACTGTTCTATTACCATGGGAGGGACTGTTTGGCTCGTAAAACCTGATTATCGGCTTTGTAATAGGCTGTGTTTGCATTACCCAAACTGCACCACAGCTTCATTTATGGCATAGCTCATCTCTCAGCTTAACATCATTGTACAGAAAACTtggttatattttttgtttttccatCTAGAGAACAATTTCTGTACATTATGTTATGGTACACTACTTGGACCTAATAAACAGATTATCAACTTA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1702982 lncRNA upstream 168116 76291130 ~ 76291342 (+) True G1489496
TU1702955 lncRNA upstream 199992 76259111 ~ 76259466 (+) True G1489469
TU1702866 lncRNA upstream 316001 76143139 ~ 76143457 (+) True G1489389
TU1702865 lncRNA upstream 316377 76142424 ~ 76143081 (+) True G1489388
TU1702570 lncRNA upstream 428641 76011292 ~ 76030817 (+) True G1489120
TU1703364 lncRNA downstream 31746 76495242 ~ 76495466 (+) True G1489839
TU1703367 lncRNA downstream 36439 76499935 ~ 76500161 (+) True G1489842
TU1703376 lncRNA downstream 41796 76505292 ~ 76505502 (+) True G1489850
TU1703382 lncRNA downstream 48243 76511739 ~ 76512013 (+) True G1489855
TU1703386 lncRNA downstream 49923 76513419 ~ 76513645 (+) True G1489859
XR_005037081.1 mRNA upstream 370789 76073063 ~ 76088669 (+) False zgc:113054
XM_021569801.2 mRNA upstream 370789 76073064 ~ 76088669 (+) True zgc:113054
XM_036950685.1 mRNA upstream 413292 76006183 ~ 76046166 (+) False mitfa
XM_036950686.1 mRNA upstream 413292 76006185 ~ 76046166 (+) False mitfa
XM_036950687.1 mRNA upstream 413292 76040012 ~ 76046166 (+) True mitfa
XM_021569813.2 mRNA downstream 176851 76640347 ~ 76657067 (+) False gxylt2
XM_021569812.2 mRNA downstream 176855 76640351 ~ 76657067 (+) False gxylt2
XM_021569814.2 mRNA downstream 176862 76640358 ~ 76657067 (+) False gxylt2
XM_021569815.2 mRNA downstream 199948 76663444 ~ 76673208 (+) False LOC110494602
XM_021569816.2 mRNA downstream 199948 76663444 ~ 76673208 (+) True LOC110494602
TU1700469 other upstream 2050269 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 2480023 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 3177439 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 3334102 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 3413870 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 220103 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 1544794 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 1554872 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 1725516 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 1725516 78189012 ~ 78190290 (+) False G1491963

Expression Profile