RNA id: XM_021569814.2


Basic Information

Item Value
RNA id XM_021569814.2
length 3221
RNA type mRNA
GC content 0.43
exon number 7
gene id gxylt2
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 76640347 ~ 76657067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTTCTCGTTGTGATGTCAAACAAAATACTCGCACTTCTCTTCTAAAGATTACGGTAAGAGAATATAGAAACTCCCACTGAGTGATGGTCATGGACGTGGAAAGCTCCTCCTCTTCGCTCTGGGTCATCTCCGGCGCAATGCAACGGAGTAGTAACAGAATGTCAACTCTAGCTGTTATTGCATATTCACAGACATGAAAGAGGAATATTGTGCTCCTCCAAATCATCAGAACAGTTTTCCACGATGAGAATTCATTGTAAAATTGTGATCGCTGTCTGTTTTGGAGTTTTTTTACTTTTGTACTTTTTTGTGGGAAATGCTGCAGACGATCCGCCTTTGAAAGAAGTTGAGGAGGATAACTATTTTCCGAAGTTCTCGGGGCTTCGAAACAATGTTGCATCAAAGTTAACAAAAAAAACTCTCGATGAACTTCACATTCCACACAAACAACCACTCACGTACCGAAAAGTATCGAAAGTATCCAGTAGAGGCAATGTGATCGCAAAGAGCAGACAGAGGAGTGACATGGGAGTGGGTCGGCCCGCATCGAAGCGCACCCGTGCTGAGGAGGTCATGCACCTGGCCGTGGTGGCCTGTGGGAACCGACTGGATGAGACGCTCACCATGGTCAAGTCAGCCCTCCTCTTCAGCATCAAGAGTATCAAATTCCACATCTTTGCAGAGGACCCCTTGACCTCACAGTTTGAAAAGGGGCTGAGCCAGTGGCCCCATGCTATCACAAACAAGTTCcagtacagtatatacccaatCACGTTCTCTGTGGGGAATGCAGAGGAATGGAAAAAGCTGTTCAAGCCCTGCGCTGCCCAGAGGCTGTTTCTCCCTGTGATCCTGAAGGATGTAGACTCTTTACTCTACGTGGATACAGATGTGCTGTTCCTCAGGCCCATGGATGATATGTGGAGTTTCCTCAAGGCCTTCAACACCACCCAGCTGGCTGCTATGGCCCCAGAGCATGAGATCCCTAAGATAGGCTGGTATAGCCGCTTTGCACGCCATCCCTTCTACGGGGTCACCGGGGTCAACTCAGGAGTCATGCTGATGAACCTCACGAGGATACGAAGCACTCTGTTCAAAAACAGCATGATAACCAGTGGCCTGTCATGGGAGGACCTCCTCCACCCACTCTACCAGAAGTACAAGAATCACATCACCTGGGGTGACCAAGATCTCTTAAATATCATCTTCCACTACAACTCAGAGTGTCTGTACACCTTCCCATGCCAGTGGAACTACAGGCCTGATCACTGCATGTATGGGAGCAACTGTAAAGGAGCTGAGGAGGAAGGCGTGTCCATTCTCCATGGGAACCGAGGAGTGTATCACGACGACAAGCAACCAGCCTTTAAAGTTGTTTATGATGCAATACACGAGTACCCCTTTGAGGACAACTTGTTCCAGTCGCTGTTCTATCCCCTCCAGACCAAGTTTCTGGACACAGTCAACACCCTGTGTGGTCGGATTCCCCAGGTTTTCCTCAAACAGGTGGAAAAGTCCATGAGGACCGTGTACGAGAAGAAAGTGGTCCGTCATGTGAGGCCTCCACCAAAATAATTACAGGAAACTGAACAGAGGAAGTTGTCTCTGACATCACTATGGGAATCTTTCTGTGGAAGATGTGCAATGTCAGAAGTCCCCAGACCAGAAGGAATCCGTATGCATTACACGGTGTTTGTAATACAACAGATCTTGGTCTAGTGGACATGATGGTGGTATGGATCATGATCGTGTAgaacacgtgtcaaactcattccacggtggGCTGTGTTTGctggttttcgctcctcccttgtacttgattgatgaattaaggtcactgatttagtaaggaactccctctaggtcttaattgaaaggaaaaaacagaaACCAGCAGACAATttgccctccatggaatgagtttgacacccctggtgtaGAAGGACAGGCACAATGTACAGTGCTTGTCAATGATGCTGTGTTTGGGGTAAACTTGCCTTATCATCCACCCACTAAATGTTTTACAGAACCTGatttacatgtgaaaatgtgatgagagattttgtgtttttttttacctttaaaaAAAGTCCAATGTCTCCTTATGATTAGGGTAAGTTCCGGTGGAGTATTAAGTGAGAATTTAAACATGGCAGAGGTTGTTTTTGTCAACTTGATTTTGAGTGTTTTTCTCTTAAATGAGAAACAAAAATGTCTTCCGTAAGGCCGCTATACCATAGGCTTCTGGAAATGGTTTGAAATGGTCCCACTCTGCCTGTAGGTTGCTGCCTAAATGATCATTTTATGTCATGCAAAGCTAATATGGGTCTTTGCTTAAGCAGAGCTTTCTGTTTATGTTGCATGTTGCAATTGTCCAAAAATAAAGTGAATATGTTACATCAACAAAATCCCTTGCATAGCAGCGACAGGaggtctagtggttaagagcagtgggccagtaaccgaaaggtcgctggttcgaatacctgaGCTGCCTAgatgaaaaaatattttgatgtgcccttgagcaaagcacttaacccaaatgtttcctgtaagtctctctggataacagtgtctgctaacTGACTAAAATGACTCTCTGTACAAGAGGGAATATGATTAAACTTGTCCAGTTCTCCAAATGCCAACCGCAGTATTAAACATAGTATGAACATATCATACACTAAGCAATTACCATTAATATTGTGTACAGAAGATGTGTAGATAAATGCACTTTTGGATTTCTGTAATAGTTCAGCTTGTGCGATTAGGACAGGACGTGCATACCATTTCTCCCCTATTCAATTGTCAAAGCATTGCAAATCCATATCTGAAAAAGCAGTGTGGTTGTCTCTGAAAAAAACTTCCAAAGTGAAAGCGCTGATAATAGTGGTACAGTATTTTCAAGACAAAATGTACCATATGTATATTTACAAACGCTTTTAAGTGTTCTGTGTACGAAAAGGACAGCCAACTTAATGAGGAAGTGTCTTAGTGTATTAATGTCATACTATCAGTGATCCAGTATGTGAACTCTGAGACTAAATGCAAGCATTTATAATGTGATGTTTGTGTAGTTTACTCCATCAGTTTGATGTTTGTGTAGCCTATCAATTGTCAGCTGTGTTTACCGGTAATAATTTAAACTGGAAACTCCAGATGGTTTTATTTATACATGCTTATGTTTCTCTTTTTTTTGTTTACTCTTTGTTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1703516 lncRNA upstream 33944 76605690 ~ 76606414 (+) True G1489975
TU1703452 lncRNA upstream 48123 76592022 ~ 76592235 (+) True G1489915
TU1703451 lncRNA upstream 48351 76591797 ~ 76592007 (+) True G1489914
TU1703432 lncRNA upstream 64365 76575766 ~ 76575993 (+) True G1489905
TU1703429 lncRNA upstream 66941 76572864 ~ 76573417 (+) True G1489902
TU1703564 lncRNA downstream 35625 76692692 ~ 76693000 (+) True G1490023
TU1703642 lncRNA downstream 140910 76797977 ~ 76842807 (+) True G1490098
TU1703683 lncRNA downstream 188623 76845690 ~ 76845956 (+) True G1490134
TU1703878 lncRNA downstream 222332 76879399 ~ 76879637 (+) True G1490317
TU1703881 lncRNA downstream 228478 76885545 ~ 76886318 (+) True G1490320
XM_021569809.2 mRNA upstream 176862 76459458 ~ 76463496 (+) True LOC110494598
XR_005037081.1 mRNA upstream 551689 76073063 ~ 76088669 (+) False zgc:113054
XM_021569801.2 mRNA upstream 551689 76073064 ~ 76088669 (+) True zgc:113054
XM_036950686.1 mRNA upstream 594192 76006185 ~ 76046166 (+) False mitfa
XM_021569815.2 mRNA downstream 6377 76663444 ~ 76673208 (+) False LOC110494602
XM_021569816.2 mRNA downstream 6377 76663444 ~ 76673208 (+) True LOC110494602
XM_021569822.2 mRNA downstream 509808 77166875 ~ 77261192 (+) False LOC110494606
XM_021569826.2 mRNA downstream 509808 77166875 ~ 77261192 (+) False LOC110494606
XM_021569828.2 mRNA downstream 509808 77166875 ~ 77261192 (+) False LOC110494606
TU1700469 other upstream 2231169 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 2660923 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 3358339 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 3515002 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 3594770 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 26532 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 1351223 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 1361301 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 1531945 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 1531945 78189012 ~ 78190290 (+) False G1491963

Expression Profile