RNA id: XM_021569816.2


Basic Information

Item Value
RNA id XM_021569816.2
length 2534
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110494602
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 76663444 ~ 76673208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCAACAGGCAGTGACCTCACGAGCGCCATATTAAAATGCTTCTTCTTCCCTACTTTTTTTGTGTTGAGAACGTAGCCACCATCAGTCTGCCTCTTGGTTTCAAGAGATTGACAGAGAACATGATGGAAATAAACTCACTCCAAGAGGCACTCAAAGACTTTGACAAGAAAGGGACGCAAGAAGTGGCTCCCCTGCTAGATCAGTTTCTGTGTCATGTTGCCAAGACTGGAGAAACCATGGTCCAGTGGTCCCAGTTTAAAAGCTATTTCCTCTTCAAACTGGAGAAGGTGATGGATGACTTCATAGCCTCAGCACCCGATCAAAGGGGGGTAGCCAATCCCAATGTGGAGTCCATTCCATTTGAGGACATGAAGGAGAGGATACTGAAGATTGTGAATGGATACAATGGAATTCCATTTACGATCCAGCGTTTGTGTGAGCTGCTTACAGAACCCAAGAGGAATTACACAGGAACAGAGAAATTCCTCAGAGGTGTTGAGAAGAATGTGATGGTGGTCAGCTGTGTGCATCCTACCTCAGAGAAAAACGGATGCAGTGGTGTGAATAGAATTAATGGTGTTATGTTGCCTGGAAACTCATCTGCTTTTACAGAGAGGAAAGTTAATGGCCCAGGGACCCCCAGGCCGCTGAACAGACCAAAACTCTCTCTAGTCAGCTCACTAGCGACAAACGGTCTACCGGACAGTACAGAAAACAAAGATCCTACCACAGAGCAGGGACATGACACACATTCCAGTGAGGTGTCAGCATCGGATACGCTAGGGAGCTCTGTGAAGAACAAGCACTATGACGATCAGGAGGTTATGGAGGCAGAGCAGCACGAGGTGAAGAGGCTCAAGTTCAACAAAGATAAAGAGGAGGAGCAGAAGGTGGACACCCTCAGCTCCTGCCATGCTGACAGCTTGTCGGAAGAGACAGAGTCCATGGtccaggagaaggaggaggaggacagtgagGCTGCCAGTACTGCTGGGACTTGTGAAGACCAAGAGCCATCGAGCACACAGTCGGAGCCATCAGCAGGGCCCGGGGCGGATAAGCAGGCAGAGGGGGAGGTACCTTGTGACTCCCAAGAGGAAGGTAATGACATGGACCAGTCAGAACAGCAGGCCACTGCTGGCGTCCTGAAGAACCCTGAGGCCCGGGACAGCGATGAGGGCAGTGACCCAGTCAGCAGCAGTAGCGCCAGCAGCTGTAACAGTGCGGAGAATGAATCCAGGGAAGAGGCAGCCCCTGCTCCCTCCAGCAGTACTCCTGAGCCAGCTGCAGAGGGTGCCATGGAGAGTGGCAGCCAGGACACTGGGACCAGTGAAGAGCCCATGGAGCAGGACTAACAGCTCCTCAGGATCGATCTATTGACCATTAAGAACATCTGTCCTCAAGTCTAGCTTGAGTGTCACCGGTGAAGGGGCTACTCCATCCTGGTCCCCTAGATACTTTACGCCTTGTCTACATTTTGGCTACTCCTCAAAATGACCACCTGTCATTGATGTGGACatccacatttttattttcaattgaAGATTTTTTAACTGGATTATTTTCTTCCCCTACACTCTATTTAAGAGTTTCCTTTTAAGGCTTGTGGTCTCCAGAGGTCTTTGTTTCAGCCTTGGTCAGTCTTTTGGGTTGCATATGATGTTTGTTCAAGCTGTGCTGATTGGACGGTGTGTTCACCTGGGTATTGTTTTCTCATCAGATTGAGCATTTGACAGGTAAAGCAGGCCCAGTTTTGTTCCTGTAGCCAGTTGTTTTTCTCTGTGGATTATCACCCCTGCCAAACCACCAGAGTCAGGACCGAGCTAACCCTGCTAACTAACCTCTTCATTATTTATGCCGTTAGTTACTTACTCCAGAGATGAGCTAGCTAGCATTTCTGTTTTGACTGAAGCTCGAGCCTCAGCATCCAGCCCATACCACTGTTTTTACTCATGTGCCGCCATCTTGGCTGTTGAGGAAAAAGTATCTTTctatgttatttaaaaaaatctattttccTCGTGAGATGGAGTATTGTATTAGATTTTCCATGTGAGACCATATTCTCCTTTTTAAAATGCGTCTTGTCTTTGCTATGATGCACTACCGATCCAACTCGAAGAGTAATGTAACATGCTACTTTTACCTTCAGATATAAGATTATATCATTTTGGGGGCACCATAATTTATATAAACATTTCAACTCAACTACTTATTTTGTAAAATGTTATTTTGTGGCAGCCAGTTTAGTTTCCAAAACCAGCTGTAAGTACAAGATGACTTCCAATTTGGATTGTGATGTCACCAAGTTGTTTGACTGACAGATATCCAGAGCAGTTACTGGTTTCTTTCTATAGCTGTACTTTTGATATTTAGAATTTTAAATTTCTGTAAAGTAGACTTTTGTAGATTGTAATACAGTATGTGTTCACTTCCTTTgtgaaaccatataattgtataATTTCTGTGTATACTCTGAATGATTTTGCTTTCAATGCAGTATTCAGATAAAGCAATAAATGTTCACATTTTT

Function

GO: NA

KEGG:

id description
K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1703535 lncRNA upstream 6418 76656438 ~ 76657026 (+) True gxylt2
TU1703541 lncRNA upstream 9011 76654184 ~ 76654433 (+) True G1490000
TU1703516 lncRNA upstream 57030 76605690 ~ 76606414 (+) True G1489975
TU1703452 lncRNA upstream 71209 76592022 ~ 76592235 (+) True G1489915
TU1703451 lncRNA upstream 71437 76591797 ~ 76592007 (+) True G1489914
TU1703564 lncRNA downstream 19484 76692692 ~ 76693000 (+) True G1490023
TU1703642 lncRNA downstream 124769 76797977 ~ 76842807 (+) True G1490098
TU1703683 lncRNA downstream 172482 76845690 ~ 76845956 (+) True G1490134
TU1703878 lncRNA downstream 206191 76879399 ~ 76879637 (+) True G1490317
TU1703881 lncRNA downstream 212337 76885545 ~ 76886318 (+) True G1490320
XM_021569813.2 mRNA upstream 6377 76640347 ~ 76657067 (+) False gxylt2
XM_021569812.2 mRNA upstream 6377 76640351 ~ 76657067 (+) False gxylt2
XM_021569814.2 mRNA upstream 6377 76640358 ~ 76657067 (+) False gxylt2
XM_021569809.2 mRNA upstream 199948 76459458 ~ 76463496 (+) True LOC110494598
XM_021569801.2 mRNA upstream 574775 76073064 ~ 76088669 (+) True zgc:113054
XM_021569822.2 mRNA downstream 493667 77166875 ~ 77261192 (+) False LOC110494606
XM_021569826.2 mRNA downstream 493667 77166875 ~ 77261192 (+) False LOC110494606
XM_021569828.2 mRNA downstream 493667 77166875 ~ 77261192 (+) False LOC110494606
XM_021569829.2 mRNA downstream 493667 77166875 ~ 77261192 (+) False LOC110494606
XM_021569825.2 mRNA downstream 542047 77215255 ~ 77261192 (+) False LOC110494606
TU1700469 other upstream 2254255 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 2684009 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 3381425 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 3538088 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 3617856 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 10391 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 1335082 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 1345160 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 1515804 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 1515804 78189012 ~ 78190290 (+) False G1491963

Expression Profile