RNA id: XM_021569820.2


Basic Information

Item Value
RNA id XM_021569820.2
length 4111
RNA type mRNA
GC content 0.51
exon number 23
gene id LOC110494605
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 77008239 ~ 77087427 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTCATCAGTGAGCGCTTCACCACCTCTGCACTACCGCTGAAGCCCGGGGATGCGCAGAATGTTAATACATCTCGACTCAGAGATCACTCTGTCACAGTATTCCTCCAGACTGGCAGCATTTTTGGAGTGTCTTGGTTGTTGAAGGACTAAACCAAAGCACCTGTGAGTGAGAAGGCGACCTCGGAGTTGAAGCTCTGTCACTGCTGAGCTAATTGTTTGGGTGCCTCGGGATTACATCGAGGAGCATCTCCACCAAACCAAGAGGAGAGAGGCATATGCGGGACTTTTTACGAGTGTAGTGTGCACGGACTGGGATTCTGTGGACCAGCGTTTACGCGCAACCTCTCGATGGGATTCTGAATGAGAGAACCAAAGCTGCTacgaaaatgtatatatatttttaaaggacATAGAGACACTCGATAAATACCACCACTTATGTCCGGCTCATTTCTCTGATCATACAATTTCATGAAGAGGAAAAAACATTCTGTTTAACAACTCAATTAAGATTCTCGTAATCAAGGGAGGACATTCCATTCACAAGCAATTGGATGAGAGTCGTATTTGCCCTTGGCAACTGAAGATGATGTTACTATGGAAACGACTTCTGCTGCTATCAATCATTGGTTGCCTTGCCGCTCATGCACAAGATGTCCTGTTCCAAGGGCCAAGATGGAGAACAGAGCCCAGTGACCTCATTCTCCCCAACAACTCCCCTGACCAGGAAGCCACCATTACATGTGAGGCAGAGGGGAAACCCTCCCCACAATACAGATGGTCGCTTAACGGAACACTCATTGATCTGGGGAGTGACTACCGGCGTCACATGTCTGGAGGCAACCTGATCATTAACAGTCTGGACAGGGACCAAGACACAGGGATATACCAGTGCACTGCCTTCAACACATGGGGGATCATCCTCAGCTGCCGAGCCACTCTACAATTTGCATACCTAGATAACTTCAAGACCCAAACTGCACGGAGTGCTGTGAATGTCCGAGAGGGCCAAGGAGTGGTTTTGTTATGTGGACCACCCATGCATTCTGGAGagcTGACGTTTGCATGGATCTTCAATGAGTACCCCTACTTTGTCCAGCAAGATAGTCGTCGATTCATCTCCCAGGAGACAGGAAGTCTGTACATCGCTAAAGTGGAGCCTTCTGATGTGGGCAACTACACCTGTGTGGTCAACAATAGCATCACTAAGGGCAAAGTCCTCAGCTCTCCTACACCACTGGTCCTGAGGAATGACGGAGCAATGGGTGAATACGAACCGAAAATAGAAGTTAATTTCCCTGACACTGTTCCAGCTGCGAAGGGATCCACGGTAAAACTAGAATGCTTCGCACTGGGAAACCCAGTCCCAGAAATAAGTTGGAGGAGAACCAGCGGTGTCCCATTTCCCAGTAAGGTGAAGATGAAGAACTCCAACGCTGTTCTTGAAATTCCACATTTCCAGCAGGAAGACACAGGGATGTATGAGTGCGTGGCAGAAAATAGCCGGGGAAAAAACGCTGCACGAGGTCGTATCGCCTTCCAGGCAAAACCCCATTGGCTGCAAACAATGATCGACGGGGCCCTGTCCATTGAGGAGAACCTGTTCTGGGAGTGTAAGGCAAACGGAAAACCCAAGCCCTCCTACAGTTGGCTGAGGAATGGAGACAACCTAATGGCAGAGGGCCGGGTACAAATCGAAAACGGGGCTCTCTCCATAGCAGCATTAAACCTGTCAGACGCCGGAATGTATCAGTGTGTGGCTGAAAACAAACATGGCATTATTTATTCCAGCGCTGAGCTAATGGTGTTAGCATCACCTCCCAGTTTCTCCAAGAATCCACTGAAGCCCCTGCTGAAAGCTCGCTCAGGCAGTGAAGTGGTTCTGGAGTGCAAGCCCCAAGCCTCGCCCCGGGCAATTAGCCTGTGGAAGAAAAGCAATGAGATCGTGCAGAAAAACGAGAGGATTACTCTGCTTGCCAACGGGACACTGAAGATTGTCAACGCAACCAGAAGGGATGCGGGGAGCTACACATGCATCGCTAAAAATCAGTTTGGGACTGCAAGCGCCACCGGAAGACTCCTTATCACAGAGCCCACCAGAATCACCCAGAGGCCTGCTAACATGGAGATCATTGTTGGCGAGAGTATCGTGCTGCCCTGCCAGATAGCCAGCGATCCAGCCTTGGATGTGTCTTTCTCCTGGGAATTCAACGGGCAGCTCATAGACTTCCACGGGGATGCCGACCATTTCGACAGAGTAGGAGGGAGCATTTCAGGAGATCTGATGATTCGTAACATCCAGCTGAATCACGGGGGGAAATATGTCTGTGTTATCGACACCGACGTAGAGAGCTTGTCCGCTTCGGCCATCTTGGTTGTGAAAGGTCCCCCCGGGCCCCCGGACACAGTAGCAGTGGAGGAGATCACAGATAGCACGGCCCAGCTCTCTTGGAGCCCCGGCAGGGACAACGGCAGCCCTATCACCGGCTACATCATCCAGGCCCGGACCCCCTTCACTGTGGGCTGGCAGGCTGTGGACACAGTTCCTGAGGTGATCAATGGCAACACACTGACAGCCACTGTGGTGGGCCTGAACGCCTGGGTGGAGTATGAGTTCAGGGTGGTGGCCCGCAACAGTGTGGGCATGGGAGAGCCCAGTCCAGCCTCAGCCAAGACCAGGACAGAGGATACCATGCCTGATACAGCTCCCACTGATGTTGGAGGCGGAGGAGGCACAAAATCTGAATTAGTGATAACTTGGGAGCCCGTGCCTGAGGAACTGCAGAATGGAGAGGGCTTCGGTTACATCATCGCCTTCCGGCCGCTGGGTGCCATCACCTGGACACGAGTGGTCATCTCCACGCCCGGGGTGGCCCGATACATCTTCCGCAACGACACCATCCCGCCTTTCTCACCGTTTGATGTGAAGGTTGGGGCGTACAACAACCGTGGGGAAGGCCCCTTCAGTTCCATAGCCACAGTGTTCTCAGCAGAGGAAGTCCCCAGTGAGGCTCCTAAGCGGGTTTGGGGCAGGAGTGTAtctgcagctacagttgaagtgATTTGGGAAGCCCTCCCCGTCACCCCTGAAAGAGTGCTGGGTTATGAGGTGGTGTACTGGGAAGATGACACCAAGCCTGACACAGTAGGCAAAGTCAGAACCTCTGGAAACTACTCAGCGGTTAATGTGACTGGACTGAGCGCTAACACACAGTATTATCTAGCTGTGTGCGCCTTTAACACTGCAGGGACAGGGCCACAGTCTACACACATCAACGCCACCACCAAGAAGCCAGCACCTGGCCAGCCTCCTTTGAATGTAGAGTGGACCATGATTGGCTCTCTGCTCACTCTACACTGGGGTCCTGTGATAGCCatggagacagaggcagaggtcATCGGATATCTTGTGCTGTTGAGAAGACACCGGTACAATGACGTAAACAGCATCATAACAAACAAAACCAGGATGGAGCTGACGCTGTCTCCCAACGACAACTACTTGATCCAGATCAAGGCCCTGAGTGAGGGTGGTGAAGGTGTGGGCAGCGAACCCATCCACATCCACAAATTAAGCATGGGCGCACGAGGTTCGGGAGCATCTAATCTCAATCCGCTATCGCTGTCTCATCTCTCCGCATTCCTCATCagcgctctcctcctcctcaactcCTCCTGGTGATGTCTGGACACAGTCACAGCCCTCCTACCGgccctcctcactccctctcctctagCAGCCTGCTCCTGCATTCAGATAGGCATGGATGCAACCCTCTGTGGCAGTGCTGGACAGAACAGGAATTTTGAAGGGGCCATGCATTGAGGATATAAATTAAGTTCTGTAGAAAACATGAATTTGTGTGCATGATATTTAACAGTTTCCTCTCATATCATAAGTGCTGTCATGCTGTAAAACCATTTTGGAAATCTTTTTTTTCCAATGGAATATACTTCTATTTGGGAGTACTGATGTCTACAttatatatgtacagttgaagtcggaagtttagccAAAtatagtttttcacaattcctgacatttaatcagagtaaaaagtccctgtcttaagtcagttaggatcaacactttatattaagaatgtgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1704142 lncRNA downstream 2658 77003804 ~ 77005581 (-) True G1490572
TU1703963 lncRNA downstream 55067 76952972 ~ 76953172 (-) True G1490401
TU1703944 lncRNA downstream 71168 76936866 ~ 76937071 (-) True G1490382
TU1703933 lncRNA downstream 79003 76928783 ~ 76929236 (-) True G1490372
TU1703915 lncRNA downstream 92977 76915035 ~ 76915262 (-) True G1490354
TU1704202 lncRNA upstream 18870 77106294 ~ 77106761 (-) True G1490630
TU1704494 lncRNA upstream 226844 77314268 ~ 77314546 (-) True G1490901
TU1704740 lncRNA upstream 395476 77482900 ~ 77483182 (-) True G1491129
TU1704766 lncRNA upstream 413058 77500482 ~ 77500764 (-) True G1491155
TU1704778 lncRNA upstream 426098 77513522 ~ 77513864 (-) True G1491167
XM_021569817.2 mRNA downstream 172376 76699461 ~ 76835863 (-) False LOC110494603
XM_021569819.2 mRNA downstream 231925 76699461 ~ 76776314 (-) False LOC110494603
XM_021569818.2 mRNA downstream 273985 76699461 ~ 76734254 (-) False LOC110494603
XM_036950694.1 mRNA downstream 436212 76545230 ~ 76572027 (-) True LOC110494599
XM_036950695.1 mRNA downstream 436215 76545230 ~ 76572024 (-) False LOC110494599
XM_036950708.1 mRNA upstream 683977 77771401 ~ 77956452 (-) False LOC110494609
XM_036950709.1 mRNA upstream 683977 77771401 ~ 77956452 (-) False LOC110494609
XM_036950704.1 mRNA upstream 683977 77771401 ~ 77956456 (-) False LOC110494609
XM_036950699.1 mRNA upstream 683977 77771401 ~ 77956457 (-) False LOC110494609
XM_036950703.1 mRNA upstream 683977 77771401 ~ 77956457 (-) False LOC110494609
TU1703698 other downstream 310143 76696796 ~ 76698096 (-) True G1490147
TU1702105 other downstream 1482643 75525182 ~ 75525596 (-) True G1488708
TU1701641 other downstream 1744016 75263720 ~ 75264223 (-) True G1488266
TU1701218 other downstream 2108492 74899391 ~ 74899747 (-) True G1487872
TU1700880 other downstream 2300630 74707345 ~ 74707609 (-) True G1487599
TU1704739 other upstream 394517 77481941 ~ 77482389 (-) True G1491128
TU1706388 other upstream 1000179 78087603 ~ 78088852 (-) True LOC110493260
TU1706362 other upstream 1127575 78214999 ~ 78219043 (-) True LOC110494620
TU1706560 other upstream 1385594 78473018 ~ 78475506 (-) True G1492729
TU1706741 other upstream 1683316 78770740 ~ 78771954 (-) True G1492897

Expression Profile