RNA id: XM_021569828.2


Basic Information

Item Value
RNA id XM_021569828.2
length 4940
RNA type mRNA
GC content 0.47
exon number 26
gene id LOC110494606
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 77166875 ~ 77261192 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATTGAGGGTCTTTTAACCCGGTCACAACATTGAGAAGTTGTGGAGGGTTTTCTCGGTTGCCATGGATTTCTAAAAGCTATTGACTGCGATAGGGTCCCTTTATCTGAACGTCTTTGTAGAAGAAAACCTATTAGTTTTTCTTCTTTTTCACAAGGGGGGCGATAGCATCTACGCTCGAGGAAGCGTTTCGTGTCATTCTAGTTCTGTCTGACCAATTGCGCACGTTTTGAGATTCACTAGTGCGATGCATCTCAGACCACTATAAACTAAATTCAACCTCATCAAACGACTGGAACGATAGGAACTGCTCTTAAAAAGGTCCAACGTCTTCTGCATGCCATAGAGATGAATTGAGAACTGGAAGAGAGCAGCGTGTTCCACTTCCCCCAAGATTAACTCTGAGATTGCTGTCTGCTGTGGCGTGATGAGGATGAGGTTGTCGAGGTGGAGCCCAGGATTGGCTCTCCTGGTTGGTGTGGTTGCCAGTATCTGTGCCTTTCACCCCACCACTGCCATAGACATACCACTGGAGGTTGTAGGTCATGTAAACATTGAGCAGCTGCCCACCATCACAGAGGCGTCCCCCAGCTCTCTGATCGCCTTCCCCTTCGATGAGAGCTTCCCCATGACGTGTGAAGCCAAAGGGAACCCCAAGCCAGAATTCTGGTGGACGAAAAATGGGGAAGAGTTTGACCCTTACCAGGACCCAAGGCTGATCAAGGAGAAAAACTCGGGGACGTTTGTGATCCCCAACACTGGGAACCTCACAGAGTACCAGGGAACTTACCGCTGTTATGCCTCGAATAAACTAGGGACAGCCATAACAGAGGAGGTTGAGTTTGTTGTGCCCCATGTACCGAAGTTTCCTAAGGAGAAGATTGATCCCATTGAGGTGGAGGAGGGTCAGCCTGTCATTCTGGAGTGTAACCCTCCTAAAGGAATCCCTCCTTTACAGATCTATTGGATGACCATCGGCCTTCAGCACATAGAGCAGGATGACAGGGTGTCCATGGGTCTGAACGGCGACCTGTTCTTCTCTAATGCTCTGGAGAAGGACAGCCACAGAGACTACTGCTGCTTCGCTGCCTTTCCCAAGATACGCACCATTGTACAGAAGAATGCCATGTCTGTCATAGTCAAGAGCACCAATTCAATCATGGAGAGAAAACCAAGTCTTCTGATGCCCTCTGGTGTCAAGTCGGAGACACAGCTGGTGAAAGGTGATGAGCTACTACTGGAGTGCATTGcagagggcttTCCAACTCCCATGATTGAGTGGTTGAAGATAGACCACAGGCTGCCTGATAGAGTAACAATAGAGAACCATGGGAAACTCCTGAGCATTGACCAGGTTGATGAAGATGACAAGGGGAAGTACATGTGTAAGGCTACGAACATCCATGGAATGGCCGTCCACTACTTTGACGTATCAGTggaagAGCCTCCTCAGTGGGTGTCTGAGCCTGAGAGCCAGCTTAGTATGATTGGCTCAGATGTGCTCATCAATTGCTCCGCCACGGGCACTCCTCAGCCCACCATCCAATGGATGGTGAATGGAAAGCCTATTGAGGAGGTCCCAGCATCTAACAGAAAagagtttgatgacaaaattgtCTTGCACAAAGCCAACTCGACTGACAGTGCCGTCTACCAATGTGAGGCCTCCAACAGACATGGAACCCTGCTAGCCAATGCCAATATCATGATCATGAATCTGCCTCCCATGATCCTGACAGATGAAGGTCTGGAGTATTCAGCGGTGGAGGGGAAGGTTATAGTGATGCACTGCAAGGTGTTCAGTTCTCCACCATCTGCTGTTACCTGGAACAAGGAGGACTCCACAGGATCTTTGGAGGGACCAAGGTTTACAGTTCACCAGAATGGATCATTGGAGATCTATAATGTGGAAAAAGAGGACATGGGCCAATACACATGTTACACCAAGAATACTGAAGGGACGTCTGCTATCACTGCCTTACTGGATGTTAAAGATCCCACAAAGATATTCCAGGCCCCGGAAGACTTGCAGGTCCTAATAGGAACCACAGCCCAGCTCTCCTGCCTGGCGGTGTACGACAACTCATTCAGTGGCGACTTTGAGATTGTGTGGGAAAAAGACGATATGGAGATAGCACTAAACCACACAGAGAATTCTGGATATTTCATAGAGGATGGTATACTGCAGATTGTCAACGTCAGCCACAGAGACCAGGGCATGTACAAGTGTGTGGCCAGAACTCCAATGGATCAGGACACTGCCTCTGGACTACTCATGGTGCTGGACATCCCACATGCACCTGAGAACTTGGTGCTATCTGAACACAAGGGCAGAAGTGTGAAGCTCAAATGGATCCCTGGGGAGGACCACAACAGCTCAACCACTGAGTTCATTATTGAGTATGAGGAGAGCCAGTGGGAGCCAGGGACCTGGAGAGAGCTTCAGAGAGTTCCTGGAAATCACGGCTCGGCAGTCCTCAAACTTTACGGACATGTCAACTATCGCTTCCGAGTGTCTGGAGTCAACACAGTGGGCAGAGGGCGCCCCAGTGAGCCCACAGAGAGATACAAGACCCCTCCCGCAGCCCCTGACAAGAACCCTGAAAATATCAAAATtgaaggtcatttgccacatgaaATGGATATCAACTGGGAGCCATTGTCCCCCATTGAACACAATGGGCCAGGCCTTGAATATAAGGTGAGTTATAAGAGACAGCATGTGGAGGAGGACTGGCAGGAGCATGTGGTGAAGAGACACTCGTTTGTAGTGAAGGACACTCCCACGTTTGTGCCATATGAGATCAGGATCCAGGCAAGGAACAACCACGGATGGGGACCTGAACCCAAAGTGGTGACGGGCTACTCTGGAGAAGACTTCCCCTCTGCGGCTCCTGATGATGTAGCGGTGGAGGTGATGAACAACTCGCTGGTCAAGGTCAGCTGGATGCGTGTTCACAAGGACAAGCTGCATGGACATCTGGGAGGCTACAGGATAAGCTGGTGGCGGCTGCGTAGTCTGCTGGACTCAAAGAAGACTCACGGGGACAAACACACTCTGACATTCCCGGGGGACCGGAACCATGCCATGGTACCAGGGCTCACGCCCTTCTCTGAGTACAGCCTCATCATCATGACCTTCAACAGGCGAGGCAATGGGCCAGGTAGCCACGCCGTCAACTTCAAAACCCCAGAGGGAGTTCCAGAGAAAACCCCAGTTTTCAGGGTCACAGATGTTCAGAAGCACACCGTCACTCTCACCTGGGCACCTCCTCTGGAGGCCAACGGAGTCCTTACAGGATACCTGCTAGAGTATCAGCTGAtcaaCGACACAGAGGAGGTGGGTGTCCTGCAGACTGTGGATATCAGCAACCCTGACACCACCATGTGGGTCCTGCAGAACCTGGAGGCTATCAGCAGATACAAGTTCTACCTGCGCCCCTGCACCAGGGTGGGCTGTGGGCCCCGGGTCAGCAAGGAGAGCACCACCACGCCTGAAGCACgtCTGGCAAGCATCCATGGAGGAATCTCTACCCAGGGCTGGTTCATCGGACTGATGTGTGTCGCGGCTCTCCTCACACTCATGGTGTTAATCGCCTGCTTTGTCAACAGAAATAAAGGAGGGAAATATTCCGTAAAGGAGAAAGAGGATCTTCATCCAGACCTAGAGTCCCAGGGTATCCATGATGACACCTTCTGTGAATACAGTGACAATGATGAGAAGCCACTGAAGGGCAGCCAGCACTCTCTGAGCGGACAGATCAAAGCAGAGGACAGTGGGGACAGCCTGGTGGACTATGGGGATGAGGACATCCAGTTCAACGAAGATGGCTCCTTCATCGGCGAGTACGCAGGTCGCAAAGAAAAGAAGGTATCCATGGAAGTCAAAGGAACCACGAATCAGAGCACAGCGTGAGAGCAAGGAAAACGGTCCATCATCCATCCTTAGGACAATACTTTCATTAGactggtggaggggaggggacatAAAGTAAGTCGATTACATAATCTGTACCAATCACAATCCAATGTCAAATGTAATGTGTCATTGTCAGCTGCACTGCCATCTTCATTTTATAAAGCTGTTTGTTTTATCAAGCTGTAACAGAATGCATAATTTCCAAATGTATATATTATTGTATGTGGGAGTGTTTTATATTACTGCAAATCAGTGAAAACCTTTGAGGCTTTTTGCATTTTTTTGTCAAATGCACCAACTGTTTGACATCAATTCAAATGTAAAAAGGAAGAAAAAGAAATCTCCAGTCCACATTGATCCTTGTCTTATACTACCAGATCTCATGCCCAGTCATCATTTAGCAAACTACATGTGTATGTGAGCAGATGATGTCAGCCTGTTTCAGTTGAAGCAAATATTGgcattttatatttgaaatgcattcattAAATATGATTTTAATATGTGTACAAAAGCTGTTCATCAACTTATTTCCTGGTTTTATAtatgaaaaaaataacaatacaaaACAGATGCCTCAGTTATATCACATGAAATGCCAAAAGATCTAAGGCAAGGGCTCTGAGAACTCTCAGTTGATAACAGGAAAGTACTTCTGCTGTTTCCACAGTGAGGTTATGATTCAGTGGTTTTATGTGCCAGCTAACATGCAGACAATTATCAACCGAGTTGCCACTTGATCTATTCTAGCTCATCAAAATACCAATTAAAGCATTCATGTTGTTCCCATGTTCTTAGAACAGCCTTGCTCATTACAACTTGCATGTCATTGTAGACAATGCCATTCAACTCCAAAAAAGTAATCATAGTAAACCTGTTTGAAAGTCAACCTAAACGTTACCATGATGATCGCCTTCGATTGCATCTTTGTACAAATACATAAAATATAGCTATTGTATGTTAAAGAATGTTTGTGGATGTTTTGATgttattaaattgtttaacttttcaTTACCATTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1704245 lncRNA upstream 14457 77151960 ~ 77152418 (+) True G1490673
TU1703977 lncRNA upstream 165968 76963380 ~ 77000907 (+) True G1490414
TU1703974 lncRNA upstream 203672 76962535 ~ 76963203 (+) True G1490412
TU1703962 lncRNA upstream 213671 76952990 ~ 76953204 (+) True G1490400
TU1703952 lncRNA upstream 221985 76944644 ~ 76944890 (+) True G1490390
TU1704433 lncRNA downstream 10124 77271316 ~ 77271598 (+) True G1490843
TU1704455 lncRNA downstream 30402 77291594 ~ 77291827 (+) True G1490863
TU1704461 lncRNA downstream 31652 77292844 ~ 77293206 (+) True G1490869
TU1704702 lncRNA downstream 194407 77455599 ~ 77455965 (+) True G1491092
TU1704724 lncRNA downstream 212600 77473792 ~ 77474040 (+) True G1491113
XM_021569815.2 mRNA upstream 493667 76663444 ~ 76673208 (+) False LOC110494602
XM_021569816.2 mRNA upstream 493667 76663444 ~ 76673208 (+) True LOC110494602
XM_021569813.2 mRNA upstream 509808 76640347 ~ 76657067 (+) False gxylt2
XM_021569830.2 mRNA downstream 74093 77335285 ~ 77448701 (+) False LOC110494607
XM_036950698.1 mRNA downstream 74093 77335285 ~ 77448701 (+) True LOC110494607
XM_021569831.2 mRNA downstream 291335 77552527 ~ 77771222 (+) False LOC110494608
XM_021569833.2 mRNA downstream 291335 77552527 ~ 77771222 (+) False LOC110494608
XM_021569832.2 mRNA downstream 291609 77552801 ~ 77771222 (+) True LOC110494608
TU1703557 other upstream 482855 76683599 ~ 76684020 (+) True G1490016
TU1700469 other upstream 2757686 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 3187440 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 3884856 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 4041519 73122826 ~ 73125356 (+) True G1485260
TU1705554 other downstream 747098 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 757176 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 927820 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 927820 78189012 ~ 78190290 (+) False G1491963
TU1705741 other downstream 991437 78252629 ~ 78253308 (+) True G1492003

Expression Profile