RNA id: XM_021569830.2


Basic Information

Item Value
RNA id XM_021569830.2
length 4225
RNA type mRNA
GC content 0.47
exon number 23
gene id LOC110494607
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 77335285 ~ 77448701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTGCGGGGGAGGGGTCTATGGTGTGGCGTTTTTGTGCTGCCAAAATCTACACTGGGAGAAACAGTTTGGACATCAAGCGGTTCTGTATCAAAAGCGATTTGAGATTCCTGTGTTCCGGACGTCTTCACAGTCCTCTTGGTTTTGAAGAACCTCTCCTTTTGCCTGCGAATATCAAGTTCATACTCGCCTGCAGCAACCTGCCCTGTCTTCTCTGTTGAAGCTAAAAGGAGCAGAGTTTACACAGGAAATATTCTACTCTCCCTGGCAATTGGATGGGAGAAAAGAAAATCTTTGACCTTGGAAATTGAAGATGTTGTTGCCATGGGAACTGTTAATCCTTCTGTCACTCAAGGTCTGCCTTGCTGAGAGAAACCCTCGCCATGGACCCGTCTTCAGTCAAGAACCAAGTGACAGCATTTTCCCCTTGAGGTTTGAGGACAACAAGGTGTTCATCAATTGTAAAGCAAAGGGGAACCCAGCCCCATATTATAAATGGAAGGTTGATGGGAGAGAGATTGACATGGATTTGAACTATAACCTGGTTGAAGGAAACCTGTTGATCAATAACCCTCATGCAACACATCATGGGGGGGTTTACCAGTGTATTGCTACCAATACCTTTGGAACCATCCTCAGCAGGGAGGCCAAGGTGCAGTTTGCATATCTACAGAATTTCAGCAGAAAGCCCAGGAACACAGTGTCAGTGAGAGAAGGCCAGGCAGTGGTGCTACTGTGTGGCCCTCCACCCCATAATGGAGAGATCAAATACTCGTGGGTTTTCAACGGACGCCCAAGTTTCCTGCTGCAGGATACCCGCCGCTTCGTCTCCCAGAGGACAGGcaacctgtacatagccaaagTGGAGGCCTCCGATGTGGGGAACTACACGTGTGTGGTGAGGAACATGATGACCAACGCCACCGTTTACAGCTCGCCCACCCCCGTGGAGCTGCGCAGGGACGCTGTAATGGCAGAGTATGAGCCAAAGATCGAAGTTCAGTTCCCAGAAAGACTTCATGTCACCAAAGGATCATCAGTGAAACTGGAATGCTTCGCCTTAGGAAACCCAGTGCCTGCCATCacatggaggagaacagatgggAATCCCCTCCCTGGCAAGATGAAAATCAACCATTCCAATGGGGTCCTGGAAATACCATATTTCAGACCGGAGGATGCTGGTGCATATGAGTGTGTTGCAGAGAACTCCAGAGGAAAAAACATCGCCAAGGGGCAACTCATATTCCAGAATGTTGAACATCTGCACTGGGTCCAGACATTAAAAGATGCTCATATGGCTATCGAGGCTAATCTTCAGTGGGAGTGTAGGGCGAGCGGTAAACCTAAACCTGTGTACAGATGGCTGAAGAACGGGGAGCccctggtgttggagGACAGGATACTTTTAGAAGGTGGACGATTGGCCATATCCAGGATCAACCTGTTGGACTCTGGGATGTACCAGTGCCTGGCAGAGAACGAACATGGAGCCATCTATGCCAGTGCTGAACTCAAGGTTGTAGCCTCTGCACCTGACTTCTCCAAGAGTCTTGTGAAGAAGTCCATGCTGATCcagagagggggggaggtgaTAATGGAGTGCCGTCCCCATGCGTCCCCAAGGGCCTCCATCTCCTGGCGGAGAGGGGGAGAGTTTCTGAAGGACAGCAGGAGACGGACTATTATGGAGGATGGAACTCTCCGTATCACCAACATCAGCAAATCAGACGGAGGGAGGTACACCTGTGTGGCCAGGAACCCCTTTGGGACATCAAGCAGTACTGGTACTCTGGTGGTGAAAGAGCCAACCAAGATAACGGTTCCACCACTGAGTGTGGATGCCACTGTGGGACAGAGCATCGTGTTGCCATGTGAAGTGTCCCGAGACTCCTCCCTGGATCCCACCTTTAAGTGGTTCTTCAACGGCAAACTCATTGATTTTAACAAACAGGACCACATTGAGATGATAGGAGGGGAATCAGCTGGTGATCTGATGGTCAGGAATATTCAGCTAAAGCATTCTGGGAAGTATGTGTGCATGGTTCACACCGTGGTGGACAGTGTCTCAGCAGCAGCCGACCTCATTGTCAGAGGACCACCCGGTGCCCCAGAGGGCCTCATGGTGGGGGAGATCACTGACTCCAGTGCCCAGCTCTCCTGGGGGTCTGGGCCAGACAACCACAGCCCTGTCACCACATACAGCATCCAGGCCAGGACCCCCTTCTCCATTGGCTGGCAGGCCGTCAGGACAGTTCCTGATTCTGTGCCTGGACAGATGTTTCATGCAACAGTGATAGATTTAAACCCCTGGGTGGATTATGAATTCAGGGTGGTGGCTAGCAACAATGTGGGTGTTGGAGAGCCCAGCATGCAATCCAAGCAGATTCGAACGAAAGCAGCAGTTCCTGAAGTAGCACCGGGTAATgtgagtggaggaggaggtagcCGAGGAGAACTGGTTATCCAATGGGAGCCGATACCAGAGGAACTACAGAATGGAGAGGAATTTGGATATATTGTGGCTTTTCGTTCTCTTGGTACAACCACGTGGAAACAGACTGTGCTGCCTTCACCTGATGCATCAAGATACACATTCAGGAACGACAgcatccctcccctctcccaaTTTGAGGTGAAAGTTGGAGTCTACAACAACGAAGGAGAAGGCCCATCTAGCCATGTGGTTGTAGTGTATTCTGCAGAGGAAGAGCCCTCTATAGCTCCGTCCAGAGTGTTGGCCCGGACGCTATCAGCCTCTGAAATCGAGGTGTACTGGGAACCCATCCCCCAGACAGCCAGCAGTGGGAAGATCATTGGATATGAGGTGCTTTGTTGGGAGGAGGGGGTGCAGGAGAGTGATGCTGAGATGGTGAAGGTCACGGATACTGTGGCCCTTCTCTCTGGACTCATGGGAAGTACGTTGTATCTgatctcagtcagggcccagaaCAGTGCTGGAGCAGGGCCTTCTAGCCCTGCAGTCAATGTCACCACCAAGAAACCACCACCAAGTCAACCTCCAGGGAATATTGAGTGGAACTTGACCAACTCCAAGATCTTTTTAAAGTGGGAGCATGTCAAGGCAATGGGAAATGAGTCTGAGGTGACAGGATACAAGGTGGTGTACCGTCAGAACTGGCTTGGAAAGAGCAGCGTGGTGGAGACCAACAGGACCAGTGTGGAGCTGCAAGTCCCCTCTGGCGAGGACTACCTCATTGAGATCAAAGTCTTGAGTGGTGGAGGTGATGGCAGCAGCAGTGGCCCCATCAGGATACCAAAGATGTCCAGTCTTAACTCAAAGGGCCGTTTCAGCTCAACTCCAATGAACATTTGTGTAGTTATGTTTTTTATACTTTCAAGGTTAACTTTGTAACTTAAAATGCCTTTTATGAACTCTAACTTTGAGAATCATCTACTCAGCAAAGTATGTGGCAGATTATAACAAACTGTTATTTTATGTGTAGCATTCACTTCTCAAGAATGTGAAATCATCAGCTTACTATTTAGAGTATTCAATGCAGCTGCATTGCCTTATATTTGTATGCAGTTTTGTGTTCATTTGTCAACCAAGCTTTTGAGTGTTTTATTTCACTAGATATTATGCAGAAAGGTCAGGCTTTGCATATGAGAAGATTGTTCTAATGTTTGACAATCTACATGAGCCTGGCCTATTTGTGTCTCATCCCTGTGTTCTGCGTGCCCTGTTTATTTGTTATTGTACAGTAAACGTTCTGTTAGGATGACTCAACTGTTGAAACGACCATGGTTCACTCAGAGGTTGTTCTTTAATTTCTTCATGAAGCACAGTTACTGTATGTGGTTTGTCTGGCTGCCGTCAATATTCAGCAAATtctgtgagaaaaaaaatctaagttCTGTGGTATTTGGACATTCTTGAGGTTTTACATATTATATCATCAACGTTTAACAGCATCATCATGGCCAATATGACCATCACAGACATATTGGATCAATATACAGAACTTGTTGATAGCTGGGGAGGATTGTATATCATGTTCCATTCATTTAACTCTTTCTCCATTTTCAATTGTTTGGTAATCAAGATGCTTCAAGTTGTGTGCTTGATAgcttattttttgtttatttaccATAAATGTGATATAGATGTTGCATAAGCCTTTTAATACTATTGTATTAACAAACTAAATGTATCTCTGTGAGATGTTATTGAGACTGAATAAAATGTTTCACATTGAAATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1704461 lncRNA upstream 42079 77292844 ~ 77293206 (+) True G1490869
TU1704455 lncRNA upstream 43458 77291594 ~ 77291827 (+) True G1490863
TU1704433 lncRNA upstream 63687 77271316 ~ 77271598 (+) True G1490843
TU1704245 lncRNA upstream 182867 77151960 ~ 77152418 (+) True G1490673
TU1703977 lncRNA upstream 334378 76963380 ~ 77000907 (+) True G1490414
TU1704702 lncRNA downstream 6898 77455599 ~ 77455965 (+) True G1491092
TU1704724 lncRNA downstream 25091 77473792 ~ 77474040 (+) True G1491113
TU1704747 lncRNA downstream 42162 77490863 ~ 77491063 (+) True G1491136
TU1704768 lncRNA downstream 59704 77508405 ~ 77508852 (+) True G1491157
TU1704769 lncRNA downstream 60503 77509204 ~ 77509513 (+) True G1491158
XM_021569822.2 mRNA upstream 74093 77166875 ~ 77261192 (+) False LOC110494606
XM_021569826.2 mRNA upstream 74093 77166875 ~ 77261192 (+) False LOC110494606
XM_021569828.2 mRNA upstream 74093 77166875 ~ 77261192 (+) False LOC110494606
XM_021569829.2 mRNA upstream 74093 77166875 ~ 77261192 (+) False LOC110494606
XM_021569825.2 mRNA upstream 74093 77215255 ~ 77261192 (+) False LOC110494606
XM_021569831.2 mRNA downstream 103826 77552527 ~ 77771222 (+) False LOC110494608
XM_021569833.2 mRNA downstream 103826 77552527 ~ 77771222 (+) False LOC110494608
XM_021569832.2 mRNA downstream 104100 77552801 ~ 77771222 (+) True LOC110494608
LOC110493259 mRNA downstream 565642 78014343 ~ 78015218 (+) True LOC110493259
XR_005037083.1 mRNA downstream 579890 78028591 ~ 78029532 (+) True LOC110494613
TU1703557 other upstream 651265 76683599 ~ 76684020 (+) True G1490016
TU1700469 other upstream 2926096 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 3355850 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 4053266 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 4209929 73122826 ~ 73125356 (+) True G1485260
TU1705554 other downstream 559589 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 569667 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 740311 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 740311 78189012 ~ 78190290 (+) False G1491963
TU1705741 other downstream 803928 78252629 ~ 78253308 (+) True G1492003

Expression Profile