RNA id: XM_021569832.2


Basic Information

Item Value
RNA id XM_021569832.2
length 5505
RNA type mRNA
GC content 0.48
exon number 23
gene id LOC110494608
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 77552527 ~ 77771222 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTATCAACAGTCGCGGGGAGCTCCGTAAAGCAAACTGCTAAACTGTGCACTATTTACCTATATTGCAAACAACGAAAGCGACATTCTTAGAGTAGGTTACTATTAGAATGTATTCGGTCGATGATACAATACATTTTGCACTCTAGTGATGGACCGATATTAATTGTGCATAGCCGCCCAACTCACTCACCAACAGCATTGCCACGATTCAACACAGTGATGTCTGTGTACAGAATTTTGTTAGGAGTATCAAAACACGGATTATTTCAATGAAATACTAATTGCAAGGATAATTACACATACGAGTGAAGACCCAGAAAGGTACCAAAAGGATTCCATACATTTGTGATTGGATGTGAGTCTACTTTGACCCCAGAAATCTGACGATGATGTTGCTATGGAAACTGCTGGTGCTGAAGTCACTCATGGGGTGCCTGGCAGAGAGCAGTGTCCTGCAGAGCCCAGTGTTCACCAAGCAGCCTGGCAGCATTGTGTTTCCTGTTGACTCCCAGGAAAACAACAGAGACGTGGTGTTCAGCTGTGAGGCCCAGGGAAGCCCATCTCCCCTTTATCGGTGGAAACTGAATGGCACCGCGGTCACTCCCAAATCAGGCTCACACTATAGCCTGTCTGGAGGCAACCTCCGAATCAGCCATTTAAACAAAGACCAAGATGCTGGAACATATCAGTGCCTCGCCTCCAACTCTTTTGGGACCATCGTGAGCCGAGAGGCCAGTCTAACCTTTGCATACTTGGGGAACTTCAAGACCCACCGAAGAAACTCAGTGTCAGTTCGCGAGGGACAGGGGGTGGTGCTGTTGTGTGGTCCCCCATCTCACTCTGGAGatctgacattctcctggaTTTTTAATGAGTATCCCTCGTTTGTGAAGCAGGACACACGACGCTTTATCTCCCAGGAGACGGGCAATCTATACATCGCTAAAGTGGAGCCTTCTGATGTGGGCAACTACACCTGTGTGGTGACCAATACTGTCACCAAAACCAGAGTCCAGGGCCCACCCACGCCTTTGGTGCTCCGCAGTGATGGTATAATGGGTGAATACGAGCCGAAGATCGAAGTTCAGTTTCCAGAGATTGTCCATGTAGCCAAAGGATTGACAGTGAAACTGGAATGTTTTGCATTAGGAAACCCTGTCCCCTCTATAAACTGGAGTAGAGTGGACGGAATCCCCTTTTCTAGGAAAGTGGACGTGAGGAAAGCCAGCGGCGTCCTGGAAATCCCTTATTTCCAGCAGGAAGACGCGGGCACATATGAGTGTGTGGCAGAGAACTCCAGGGGGAAGAACACTGTAAAAGGAAAGCTCTCATTCTACGCCCCTCCACATCTGATAGAGAAACCTGAGGATGTGCAGAAGCCCATTGACGACTCTCTGGTGTGGGAATGCAAGGCCACCGGGAAGCCCAAGCCCTCCTATAGGTGGATGAAGAACGGAGAGAACCTGGAGTCACTGGAGGAGCGCATACAAGTTGCCAATGGAGCGTTGTCAATCAGCCGGCTGACGCTGTCCGACATTGGAATGTATCAATGTGTGGCTGGAAACAAACATGGGGAGGTATACTCCAATGCAGAGCTCAGAGTCATTGCTGTTGCCCCAGATTTCTCCCAGAACCAGCTGAGGAGCCCCACCAtggtgaaggagggaggagacgTGCTGATCGAGTGCCGGCCCAAGATGTCCCCCTGGGGCGTGATCTCCTGGAGGAAGGGCAGTGAGGCTCTTCGAGAGAGCCACAGGGTTTCCATTCTGGATAACGGAAACCTCCGGATACAGAATTCAACCAGACCAGATGCAGGCCTTTACACGTGTGTGGCAAGAAACCAGTTTGGAGTGGCAAGCAGCTCCGGGACTCTCATGGTCAAAGAGCCGACCATTATCACAACGGCACCGTCCACCCTGGACGTGACTGTAGGAGAGAGCATCGTGCTGCCGTGTCAGGTGACTCATGACCCGTCTCTGAAGCTCATGTTCACCTGGTTCTTCAACGAGCAGCTGATCCACTTTGGCGACCACGGCGGATACTTTGAAAAAGTGGGCGGTCAGCATTCCGCTGGGGACATCATGATTCGGAACATCCAGCTGAGACACGCAGGGAAGTACACCTGTgcagtgcagaccaaggtggacaGCATCTCCATCGCAGCAGACCTGGTGGTCCGAGGTCCCCCAGGCCCACCTACCAGCATCCATGTAGAAGAAATCAGTGAcaccacagcctctctctcctggagacCGGGGCCTGATAATCACAGTCCAATTACCACATACACTATCCAGGCCAGGACACCCTTCTCCCTGGGCTGGCAGGCTGTCACCACAGTTCCTGAGGTGGTGGGGGGCCGCAgtctgacagctacagtaataGACCTGAGCCCCTGGGTGGAATATGAGTTCAGAGTCCTGGCAAGCAACGCCATTGGGACCGGGGAGCCCAGCAAACCATCCAAACAAGCAAGGACAAAGGAGACATCTCCGAAGGTCACACCAGCTAATGTGAGCGGAGGTGGAGGCAGTCGCTCAGAATTAGTCATCACTTGGGAGCCTGTTCCTGAGGAGCTGCAGAACGGAGGAGGGTTTGGCTATGTGGTGGCCTTCAGACCGTCCGGAGCCACAGGCTGGATGCAGGCTGCCGTGCCCTCATCAGAAGCCTCCAAATATGTCTTTAAGAACGAGAGCATCCAGCCCTTCTCCCCCTTCCAAGTGAAGGTTGGAGTGTACAACAACGAGGGGGAAGGCCCTTTTGGACCCGTCATCACCATCTACTCTGCAGAGGAAGAGCCTGGCAGAGCGCCCACCAGGATCCGTGCCAAGAGTCTGTCTGCGTCTGAGATTGAGGTTTCATGGAAAGCCCTGCCTTGGAACACCAGCAAGAGAAGAGTTCTAGGCTATGAGTTGAGGtactgggagaagagagagaaggaggaggcagCCAGTGTCCAGAGGACGGTAGGGAACCAGACGTCAGCCATTATCCGAGGGGTGACAGGAAGTAACACTTACTACATCACAGTGAGAGCGTACAACACGGCCGGGGCTGGGCCTCCTAGTGTCACTGTCAATGTCACCACCAAGAAACCACCGCCCAGCCAGCCCCCGGTGAAAGTGATGTGGAACACATTGAATTCCAAGATAATCCTGAACTGGGAGCAAGTCAAGGCCCTGGAAAATGAGTCCGAGGTCACTGGCTACAAAGTGCTCTACAAGCGTAACCGACACAGCCGCCCTAGTGTCATGGAAACCAACACAACGACGGTGGAGCTCTCCCTGCCTATGAATGAGGAGTACTTCATCCAGATCAAACCAtttggggaaggaggagaggggagcagtAGCAGACAGATCACCATCCCCAGAATACCAGGTCCCAATGCAATTGGCTCGGCGACCAAGGTCTCTACTTTATCAGCCCTCAGTACAATAGCATTGTCTTTCACAGCGCGAACATCGTTATGACAAAGCGCTCCCAGTGAACATTGCATCTGATGTGGAGGCAACTCAACATCGGAACCCAAACACCGTCTGGTCTAATTAGATCCATTCATTTAGGTTTTAGAGGCAGGAGGACGAGCAACGTTGGAAAACAAAGTCATTGAGATGAGAATGAGAGAAAGGGCCCCGCTTTCAACACCCCGCCGGCCGGCGAGAACAGGAAATCGACCGATGTCTTGACTCTGTTGTTACCAAAGCAGCTTTCATTAAAATGTCTTATATGCATCTTTTGTATGATATGTCTAGCTTTTATAGATTTATTTTGAAACCAATTCATAATTAGTCTGGGCTTTTTAGAAAAGGCAAGGTTGAGTGGAGTTCAGTGTATGCCCATACTTACTTACAGATACATTTTTTAAGTTTTCAGTTTGTTGGAAAGAGCACTTTTGTTGTCTAACGTGAAGAGCATTTTCTGGTCAAAAATGAACCTGTAACTATGGTTTCATGTCAAGCAAAGACCATAGTTCAGTCTTCTTAGAAACTTAGGAATTGTTAACACTGAAATGATGTGTGTATTGCTAACTATTTTTTTATTACTCCATAAAACATTGCACTGATGCCTGAGGAAAAATTTGACTTAACAAAAATGTGACATTATGTTAAAGGATGAGAGTGACTTTATTCACTCTCACTGCTTTGAAGTCCCATCTTCCACAGGTTCCTCAACCTTGGCCATTTAATTGCACTGGTGACTGGACCCTCATATGGCTGTCTATCTCATCCTCTCAGTTGGCCATGTGTCTACTCTGTAGCTATTCTATTCATCCCCTGAAAAGCCGTATCTCTACTCTGTAGCTATTCTATTCATCCTCTCAGTTGGCCATGTGTCTACTCTGTAGCTATTCTATTCATCCCCTGAAAAGCCGTATCTCTACTCTGTAGCTATTCTATTCATCCTCTGATAAGCCGTATGTCTACTCTGTAGCTATTCTATTCTTTGCCTTGTGTGTGCCTCATCATATGTTCAAAACCCTCAGGTCCTTAAAGAGCCTTAAACTTATATATCTATCAATAACTATTAGAAACCTAGAAGTCTGTTATACAGGTGCTGTATGATGTGTAGCTACACACTGCATCAATAGACAGGTTGTAGGGGTTTGAGTTATTACCATCCAATGTATATTCCTATGGTCATTCTTAGGGCCAAGTTATGTAGTCAAGAAAATCTCCTTGTCCTAGTTATATATTATAGTTAGGGCCAGGGTTTTTTCCTGACCCTGTGGCATCGCCAGGAAAATCTCCTTGTCCTAGTTATATATTATAGTTAGGGCCAGGGTTCTTTCCTGACCCTGTGACCTCGCCAGGAAAACCTCCTGGCTCTTGTCATTCTATATGAAGGAGTGGTGTGTTTCAACAGCATGGGGCTGTTCAGTATGGTTTAAGGGCAACGTGGGAAGCCTGGGACATTTTAGTGGGTTCACTGACTGCATCCTTACTAAAAGACAAATGCTGCTGATGATCCTTTCCCATAGTCTTCTGATGCTGTTTGAAACTGGTACAGTACATTACGTATGTAGCTTGTAGTCCAGTGAAGAAGTCAAAAGTGCAGGTAGTTTGTAGTACTTTCAAAGGGAAGTTTAGGCAGGAATAATGCATTGAGAAATGTGTAATATACTTTTTTGTACACTTCAGATCATTTGTATACAATGAAAACCTTTCTAAAGAGCAGATTAACTTGGTTtttatgtaataacacaaacGTTTCATACAGTAGCTAAATGTCGCTTAGCATGAATGTGTTTGCCCTTTTCTGTACATCTGCTAACTGACTGAATGGCTTGAGACCACGCAATGAGAGCAGGTTTGTGCATCTCTACCCGTTAACCCACTATGTCTGGGCTTCTGTCTCAGACAGGTATGTCCTCCTGTAGGCCTACACCCTTTGGGATTTACCAGTACAACTATCCATTTACTCCATgtcaagttctgtttttgttgctgttgtttgtttatactgtgttATTGAATAAAGTTTATTGATTTATAGAAGT

Function

GO: NA

KEGG:

id description
K06762 CNTN4; contactin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1704811 lncRNA upstream 20470 77532123 ~ 77532331 (+) True G1491200
TU1704800 lncRNA upstream 24702 77527847 ~ 77528099 (+) True G1491189
TU1704795 lncRNA upstream 28563 77523977 ~ 77524238 (+) True G1491184
TU1704779 lncRNA upstream 38399 77514112 ~ 77514402 (+) True G1491168
TU1704769 lncRNA upstream 43288 77509204 ~ 77509513 (+) True G1491158
TU1705033 lncRNA downstream 23570 77794792 ~ 77868915 (+) True G1491417
TU1705488 lncRNA downstream 186381 77957603 ~ 77957806 (+) True G1491831
TU1705553 lncRNA downstream 236807 78008029 ~ 78008253 (+) True G1491885
TU1705557 lncRNA downstream 237883 78009105 ~ 78010123 (+) True G1491889
TU1705560 lncRNA downstream 239364 78010586 ~ 78010787 (+) True G1491892
XM_021569830.2 mRNA upstream 104100 77335285 ~ 77448701 (+) False LOC110494607
XM_036950698.1 mRNA upstream 104100 77335285 ~ 77448701 (+) True LOC110494607
XM_021569825.2 mRNA upstream 291609 77215255 ~ 77261192 (+) False LOC110494606
LOC110493259 mRNA downstream 243121 78014343 ~ 78015218 (+) True LOC110493259
XR_005037083.1 mRNA downstream 257369 78028591 ~ 78029532 (+) True LOC110494613
NM_001124198.1 mRNA downstream 260265 78031487 ~ 78036695 (+) True lbp/bpi-2
XM_036947917.1 mRNA downstream 279747 78050969 ~ 78053292 (+) False tcbp2
XM_036947916.1 mRNA downstream 279770 78050992 ~ 78053292 (+) False tcbp2
TU1703557 other upstream 868781 76683599 ~ 76684020 (+) True G1490016
TU1700469 other upstream 3143612 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 3573366 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 4270782 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 4427445 73122826 ~ 73125356 (+) True G1485260
TU1705554 other downstream 237068 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 247146 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 417790 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 417790 78189012 ~ 78190290 (+) False G1491963
TU1705741 other downstream 481407 78252629 ~ 78253308 (+) True G1492003

Expression Profile