RNA id: XM_036950709.1


Basic Information

Item Value
RNA id XM_036950709.1
length 6642
RNA type mRNA
GC content 0.47
exon number 24
gene id LOC110494609
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 77771401 ~ 77956458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAGCAAGCGCTCGCTGTTCGCTGACATCCGGAGACTTGCGCGTTTTCTCCTCTACTCCCAGCCTTCGTTCCTCCCTCTttcgctctccttctcttcctcataCTCGCTCGAAGCTCTTGACTCCGTCATATACTGCTGTTCCCTCAAAGCAGGGAATAAGGACGGGGCAGAGGCAGTATTGGATTGATTTGCCCGCGGTGCACAACGTCAACAGTCCACACCTGGATGTGTGTTTGACTTGAAGGTTAAAGAGAGGTTGCTATGCCAACAGAGCTTGGCTCTGAGTCACAGGTGAAGAAGGCAGCCGAAGAGTCCTCCTGGCAGAAGGGGGCAGCAACAGGCATGCAGGACTCGGCTTTAGACGCAAAGATGGCCAAACAGGACCAGGACTCCAAACTGATTGACGACCACAGGGAAATAGACGACGTGTCAGAAAAGACCACCCCAAGCAAGACCCCCAAGTCCCCCCAGAAGACTTCCAAACGGCCAAAGACTGTTCCCTTCAAGGTCACTCTACTGGACACCTCTGACTATGAGGCAGGGATTGAGAAGCACTGCAAAGGACAGGCCTTGCTGGACATGGTGTGTGAGCACCTCAACCTGCTGGAGAAGGACTACTTTGGCCTGATGTACAGCGATGCAGAAAGCCAAAAGAATTGGTTGGACCCCTCCAAGGAGATCAAGAAGCAGATGCGCACTGCTCCCTGGCACTTTGCCTTCTCTGTCAAGTTCTACCCTCCAGACCCCTCCCAGTTGACAGAGGACATCACCAGGTACTACCTGTGTCTTCAGCTGAGAGATGACATGTTGTCAGGCCGTCTGCCCTGCTCCTTCGTGACCCACGCCCTGCTGGGTTCCTATGCCGTGCAGGCCGAGCTGGGAGACTATGACACCGATGACCACGGTCCCGACTACGTCAGTGACTTCCGCTTCGCTCCCAATCAGACgcgagagctggaggagagggtcaTGGAGCTCCATCGTAACTACAGGGGTATGACGCCAGCTGACGCAGAAATCAACTTCCTAGAAAATGCTAAGAAGCTATCCATGTATGGGGTGGATCTCCATCATGCCAAGGATTCAGAAGGGATTGACATCATGCTGGGCGTATGTGCCAACGGCCTCCTGATATACCGCGACCGCCTGAGGATCAACCGCTTCGCCTGGCCAAAGATTCTCAAGATATCCTACAAGAGGAGTAACTTCTATATCAAGATCCGGCCCGGAGAGTACGAGCAGTTTGAGAGCACTATTGGCTTCAAGCTTCCAAACCACCGGGCGGCTAAGAGACTGTGGAAGGTCTGCATCGAGCACCACACCTTCTTCAGGTTAGTGTCTCCAGAGCCTCCTCCTAAGGGCTTCTTGGTGATGGGCTCTAAGTTTCGATACAGTGGGCGAACCCAGGCCCAGACACGGCAGGCCAGCGCTCTCATAGACCGGCCCGCGCCACACTTTGAACGCTCCACCAGCAAGAGGTACCTGCTGTCCCGCAGTCTGGACGGAGCAGAGTTCTCCCGGCCAGTGTCGGCCATGTGTGAAAACCAGGATGGTCTGTCCCAGCACAGTGGCAGTGAACACCCCCACCTCCACAGCCCCTCTGGGGACGAACAGGAGACAGAACTGGAACCACCCAGTTTGGAGCAGGACCAAGAGGAGGATCAGGATGAGGAACAGGATCTAGAGGAATACCACGAccaagaggaggatgaggatggtgTCCCCACCCCCAGCAAGAAGAAGGAGATCAAGGAGGATGCTGGGTCCCCACTTGACAATATACAGGAGTTGGACCAGGAGACAACCCTTCGACACCAGGAGTTTTTGGATAAGTCAGAGGATGTCTTACTGAAGCACCAGGCCAGTATCAATGAGCTGAAGAGAGCCCTGAGGGAGCCTAACAGCAAGCTGATGAACCGTGAGAAGCGTCTGTCAGGGACGTCACCTGGCGGAACACCCGAGAAGAAGGCTGAGCCACTCTCCACTCCTGTCATCTAtgaagatacagtagatgatgcCAAGAGGGAACCCTGGGAGAGGAGGCCTCGGCCGGGCTCCGCCTCGGAGGACCACGAGCGTGACACTGTGGTCTGCATGAAAGAGACCCACCTGGGCATCGAGAGGAAGTGCTCCAGCATGACGGTCAGCTCCACGTCCAGCCTGGAGGCTGAGGTGGACTTCACCGTCATCATGGACCTCCATACGGGCGTGGAGGAGTTCTCCAAGAGCATGTCTAAGCTGGGGGAGCGGCTGCCCGAGGTGGGCCGGGACGACTTTGAGGAGACATCCAGGTTCTTTTCAGCCCGTCTCATGGTCTCCCATGACATGTCCCCTGTAGAGGAGATGCCTCCTGTGCACAATGAGCCCCCAGTAGCCAGGAAAGACCCCAGTGCTGTTAGCACTGCCCAGATGCTGAGGGAGGCCGACGCCAAGATGGAGACACACACCAATGGGTCAGAGGTCACCAGCACCAACATCATGGACATGTCAGAGCAGcaaATGGAGACTGACGTCAACTGTAATGACACTAAGGTCTCCAGCAGCACTGACGTGGCTCAGCCACCAGAGGGAGTCCTGAACCAGAACCAGGGAGTTGGCAGTAGGAAGGAGGCTCCTCTCCCTAGTAAAGAAAATTGCTCCCCTGTGAAGGCAGGCACCCTGGGGAGAGAGGCTGTAGAGTCCCCCCTGAATGTCACCACTGACAACATCACAACTCAAGTTACCAAGacAGTGAAAGGTGGCTACTCCGAGACCAGGATTGAAAAAAGGATCATCATCACAGGAGATGACGACGTGGACCAACATCAGGCCCTTGCGATGGCTATACAGGAGGCCAAGCAGCAACACCCTGACATGCTGGTGACAAAAGCAGTGGTTGTCAGGGAAACAGAGTCTCCCACTGAGGAGCAACATAGGACATCTGAGTCCTGATCGCTCATAGTGGTTCCTGGGAGTGGGGACAGGCAATTACTTGATCCTCCCGTCATCTCCCTGAACCTCCCCACGCCAACGCTGCAAGAGGGCTACAGCAACCTGCCCACAGTGTATACTACAATACAACAGACCGACCGCGCTCCCAGAAACAATCCCTGTCTCCTCTACAACACAATAtgcctcctctcctgtccctttAACCAAAACCGACTGTGACGCCGCCTCTGACCCACGctcaaccccccctccccccccaacccctcttccTCTGGGAAATTCCCTTTTCCCTGGGATTTTTAGAACATGACCGTTCTCACAAATCTGAGAAATAGACTGCAGTGTTTATATCTCCCCAAGAGGTCTGACTTGTAAAGAATATGGCAGGAATAGGGCTAATATGTGTTGCCCCATGTTTAGCCATGGGATCTGTGAGAGATCAATATGGTGGTTCTGGTGTTCTACACCCCCACAGACTGTACATGTACAAACATAATGACATGTTAACGGTTCATCACCCTTGATCAATGTAGTTCAATTAAATGATTAGTGATGAGGATGTAATACATCTTGAGTTAAATCAGATCAACCTTCCCCCAGAACACATTGACTTACCTGTAACTACTGGTCATTTATTCGCCAGGAAGTCAATAATAGTCCAACCTTCAAAATTGCTCTCAGAAATGGTCACCATGGCGATGCCTGCTCAGTGCTGACATCATGCATGTAGCATGGGGATCGGGAATGGAGTGTGAGGAGAGGGGGTTGGGGGAGGGCTGCTCTGCAGGGTCCAGTGGGGATGGCTAGCCTTTAACGCTTGTTGTCACCAGTGTGACACATATATAAAACAGCTGTCTTACTAGCTTTTTAAACATTTGTAACAATAGAAGAATCCAATTTAAAGTCCAGTGTTTGCTTGTttaagaaataaataaaataaatgtatcgATTAGCTTCTCATACTCACATGCATGGTTCTACATAGTTGAGGTAATGAACGATACGATACCGACCTGTCTAGGAACAGACGTCCACAGGAAGTGGTCAAGATGGCAGAACATTCAGACAAATCTATATCTGAAAGATTCTGTGGAATATACTTCTGCAATGTCTAGACACTGCATGTCAACCAAAGCTGATGGGACTATACTGATAGGAGAGTCAACTGAAGGAATATGTGGACAGACACTTCTACAACGTCAAGAGACTATGAGTTGGGACTCCGCTTAGCATTCAGGGTATACTACTTCTATAGGCTCTGACTGTCGTTCTCCAGGCTAACAACAAACAGAATCCCCCCCACTCTCCTCATCATGTTCTCCTTCCTTCGTCCTGCTGTTATAATTTCAGTCTAAAACGCTGGTCATGTAGGGCAAAAgtcaaatcacaccctattcaccatgtagtgcactactttagccaAAATTAGTACACTCTACTGGGAAAAGGTTGTCATTTGAGACATGGTAGGACTCTTACAGCAAAATGAGCGCTTTTCATTTAAAGTTTCTAATTATTTTATGAAATGTGAGTATATGTTTAAAAAAAGCTCTTGCTTGAGTTGTCTTTGTCATGTTGTATGAGTTCTACGTTTGTATTTATAAGAATGGTGGTGAATGTGGGTATTTTCCTTCCCTAAAAAGTATGAGTGTGTGATGACTTTTTCTGTACCCTCAGACAAAGCCTGGACCCCCCCCAAACTCCATCCTCTTGGATAGTTAGACAGGAGATGAACCATAACAGTTGGAACCCTTTTTATGCTCCACAACAGCAAGCAATGCCTCCATAACCTTGCCTGGCTTAACCttgtatacactcttagaaaaaagggtccttcggctgtccccataggaacatcctttttggttccaggttccATCCTTTTTGGTTCCTCTTTTGaacgggttctacatggaaccaaaagtgttcttacctgaaaccaaaaagggttcttcaaagggttatttTATGGGGACATCCGAAAAAaacacttttaggttctagatggcaTCTTTTTTTCTAAGCGTGTACATGTTCATAAATACTCTCTGCATAATATCCTCTTAAGCTATGCTGAACTGCTGAAtatacaccagtcagtcagtttgagaaaaaaaaaacgatgCTGGAACAAACTGTTGAATTTACATACTATGCATTGTTCCCTGTGTGGACTAACTATGAAACATTACTGAGGATAACCAGATTCATTTTTGGAGCGTTGATCTGCGCTTATCATCTCCGATGTGATATTAATTAATTACAGCGGTCAATTTTTAACTGCTTGTGAGACTTGCAATAATTGTCTCTCTGTAGCCACCTGATGCTATCGTATTCCATTATCAGTCTACTTAAAGGAGAAAACTGTGAACTGTCTGCATATGAAAAGTATTACCAAAATGTTCCAAGATGGATTTGAAACCAGAAGTTGAGCTCATCCACACGGAGTCTCCGTGGCTTTGTCACCGTGCTTGTCAAAACGACTCCACTCTCACTACACCCTGAAGTAACAGAGGGGATCCCTTGGACGTTGTCTTACCTGCTGTAGAGTTGTCTTTGTGAAACAGACAGTCTCAACACTTCTTTTgtatattttatttcattttatctGGTCAAAAGACACTGGATTGTTGTTTAGGCACTTGCTTGTGGTGATAGGCAGCGACGATATTGTTAGAAGTGTGTGGTGTCGCTATATTGGACACACACCTCTCAAAATGATGACTTGCTGTATAGACAATAAGAAAGAAGTTGCCCTGTAAAGCTGATGTGCTGTTTTTTAAAGGTGGGAGTCATTGTATGCAAATGAACATAAATACTTCTATGTGTGCATATAATTACAAATATACCGGAAGAGTGGGATGAAGTTGTGCTGATTTCATAATAGAGGATTAACAAATGTTCTATGTTAAGACTGCAGACCACTTGTGCGGTCTATTACAGTGCACTGGTTATACTGATGATGGGTGCCTTACTGTTGGATTCACCGCCACTGGAAACCATGTAATTGATTATTTTGTCTACATGTGATCTACTAACATTTCAGCCATCCACTCTCCATGTGGTGAGGTCTCGACCTCTTCCGGAGCCCTGGATGACATCACCTTTACTGTCAAAGGTGTTGGCCGTTTGCAGTCTCTTTACCTGCTCATTAATGTCCAATATAAGGATTGGGCAATACTATTGATAAGCTATGATACTCGTTCAGTGGTAGGAATAATAAGTATTGGAACTAAAATCCATTGAAGAGCAGAAAGATTACAAACACAAGGCCTAATAGGACAGAACTACTATGAGTAGCTGATTCCATAGACTCGCGTGAAGCACTATCcgttccactcttcctcttccATCCTTCAATTCACCTCAACCTTTTGCTCTTCATTCCCcaagtgtgtagtggtgtgtgtttgcTGTATTTGCATTCAATTTAAATGGAAAACATACATAAATAAATGTCTCATTGCGATTCACATTGTCTCTGCAATTTCACGACGAAGACAAATACTTCAAGATGTGAAAACAGGTAAAGGTCTTGAGACTGTAAGCACAGTACATTTCATTTGTTTAGTATCCTGCATTGCCATCTTGTGGTTCTTAACGGAATTGCAATTGATATTAAGATTACAGTAGTATAACATTCCATTGAGTATAATCATCAATATCCTCAACTTAAGATATTAATTAAAATGGTTATTGCTCTACCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1705339 lncRNA downstream 264 77769117 ~ 77771137 (-) False G1491697
TU1705341 lncRNA downstream 264 77769117 ~ 77771137 (-) False G1491697
TU1705342 lncRNA downstream 264 77769117 ~ 77771137 (-) True G1491697
TU1704812 lncRNA downstream 238880 77532199 ~ 77532521 (-) True G1491201
TU1704804 lncRNA downstream 242334 77528840 ~ 77529067 (-) True G1491193
TU1705489 lncRNA upstream 1614 77958066 ~ 77958287 (-) True G1491832
TU1705518 lncRNA upstream 19535 77975987 ~ 77976652 (-) True LOC110494610
TU1705536 lncRNA upstream 26987 77983439 ~ 77990936 (-) True G1491870
TU1705549 lncRNA upstream 46700 78003152 ~ 78005702 (-) False LOC110494612
TU1705551 lncRNA upstream 46700 78003152 ~ 78004372 (-) True LOC110494612
XM_021569821.2 mRNA downstream 683974 77008239 ~ 77087427 (-) False LOC110494605
XM_021569820.2 mRNA downstream 683977 77008239 ~ 77087424 (-) False LOC110494605
XM_021569817.2 mRNA downstream 935538 76699461 ~ 76835863 (-) False LOC110494603
XM_021569819.2 mRNA downstream 995087 76699461 ~ 76776314 (-) False LOC110494603
XM_021569818.2 mRNA downstream 1037147 76699461 ~ 76734254 (-) False LOC110494603
LOC110494610 mRNA upstream 18837 77975289 ~ 77976640 (-) False LOC110494610
LOC110495194 mRNA upstream 26951 77983403 ~ 77984480 (-) True LOC110495194
LOC118940494 mRNA upstream 33448 77989900 ~ 77990977 (-) True LOC118940494
LOC110494611 mRNA upstream 40282 77996734 ~ 77998924 (-) True LOC110494611
XR_005037082.1 mRNA upstream 40282 77996734 ~ 78007202 (-) False LOC110494612
TU1704739 other downstream 289012 77481941 ~ 77482389 (-) True G1491128
TU1703698 other downstream 1073305 76696796 ~ 76698096 (-) True G1490147
TU1702105 other downstream 2245805 75525182 ~ 75525596 (-) True G1488708
TU1701641 other downstream 2507178 75263720 ~ 75264223 (-) True G1488266
TU1701218 other downstream 2871654 74899391 ~ 74899747 (-) True G1487872
TU1706388 other upstream 131151 78087603 ~ 78088852 (-) True LOC110493260
TU1706362 other upstream 258547 78214999 ~ 78219043 (-) True LOC110494620
TU1706560 other upstream 516566 78473018 ~ 78475506 (-) True G1492729
TU1706741 other upstream 814288 78770740 ~ 78771954 (-) True G1492897
TU1706762 other upstream 821900 78778352 ~ 78781395 (-) True G1492910

Expression Profile