RNA id: XM_036947917.1



Basic Information


Item Value
RNA id XM_036947917.1
length 962
RNA type mRNA
GC content 0.48
exon number 2
gene id tcbp2
representative False

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78050969 ~ 78053292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


taatcaATAACTTGGAATTCAGGGTTTGGGTTATCAGTGTCACATGTTTTGAAATGGATTTCTAAGAGTTTGGGtgagtgtatatatactgtacagtttGAGAGGCAcactaggtagccatttgataagGCGGATCAACAATGagAGGCCCATGAGAAGATCCTTGGTGTTCCCAATGGAAACTGACAACAGCTACGTGGAGCTGGTCCCTCAGAAGGATCTTGACATGGGAGCCTTCACCCTGTGCATGCGGGTGGCCACAGAATTGGCAGAGGGCAATCGTGAGATCATCTTGTTCGCCTACCGTACACTGTACCACGACGAGCTCAACGTGTGGAGAGAAGCTGACGGCAGGTACGGTCTGTATTTGAGTGGGGACGGGGTCCTCTTCCACCTACCAGAGCTCAACACCTTCCAGACCCACCTCTGTCTCACCTGGGACTCGAAGTTAGGTATGGCTGCGTTCCACGTAGATGGGAAGAGGAGCATTAGGAAGGTGTATAAACCAGGACACAAAGTGCAGAAGGGAGGTAAGGTCATCCTGGGACAGGATCCAGACTCTTTCCTGAAGGACTTTGACAGCAAGCAGAGTTTCATCGGAGAGATCACAGACGTCAACATGTGGGACTACGTGCTCTCCGATGCCATGATAGAGGCTTTGCATGTTGGGAAACGTATGCCCAGAGGGAACATTTTTGACTGGGAAACCATAGAGCTCATAGTCAATGGGAACGTCAAGGTGATCACTGAAGAGTTGTAAGGTGTCCCCAAGGCACCAACAACATGCTCTCCATCCAGGGGTGCTGCACTGCGGCCTGACCCTGTGCTCTCTcaactgtgtgtcagtgtgatgtACATTATCTGAGGAAGTTAAGAAATTACAGAAAATTCATATGGAGAATAAAGTTGTATTAGTTTGAGTCCCTGTCTCATCTCAACAAATATAAAGTTCCCAACGGGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1705560 lncRNA upstream 40182 78010586 ~ 78010787 (+) True G1491892
TU1705557 lncRNA upstream 40846 78009105 ~ 78010123 (+) True G1491889
TU1705553 lncRNA upstream 42716 78008029 ~ 78008253 (+) True G1491885
TU1705488 lncRNA upstream 93163 77957603 ~ 77957806 (+) True G1491831
TU1705033 lncRNA upstream 182054 77794792 ~ 77868915 (+) True G1491417
TU1705614 lncRNA downstream 32775 78086067 ~ 78086589 (+) True G1491925
TU1705617 lncRNA downstream 36887 78090179 ~ 78090496 (+) True G1491928
TU1705628 lncRNA downstream 69037 78122329 ~ 78122539 (+) True G1491939
TU1705630 lncRNA downstream 70934 78124226 ~ 78125219 (+) True G1491941
TU1705636 lncRNA downstream 79896 78133188 ~ 78133414 (+) True G1491947
NM_001124198.1 mRNA upstream 14274 78031487 ~ 78036695 (+) True lbp/bpi-2
XR_005037083.1 mRNA upstream 21437 78028591 ~ 78029532 (+) True LOC110494613
LOC110493259 mRNA upstream 35751 78014343 ~ 78015218 (+) True LOC110493259
XM_021569831.2 mRNA upstream 279747 77552527 ~ 77771222 (+) False LOC110494608
XM_036950711.1 mRNA downstream 3033 78056325 ~ 78060810 (+) False LOC118940495
XM_036950712.1 mRNA downstream 3105 78056397 ~ 78060810 (+) True LOC118940495
XM_021569840.2 mRNA downstream 31430 78084722 ~ 78085995 (+) False si:ch73-303b9.1
XM_021569842.2 mRNA downstream 31618 78084910 ~ 78085995 (+) True si:ch73-303b9.1
XM_021569847.2 mRNA downstream 337613 78390905 ~ 78395729 (+) True LOC110494621
TU1705568 other upstream 31153 78018368 ~ 78019816 (+) True G1491899
TU1705554 other upstream 42170 78008290 ~ 78008799 (+) True G1491886
TU1703557 other upstream 1366949 76683599 ~ 76684020 (+) True G1490016
TU1700469 other upstream 3641780 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 4071534 73978890 ~ 73979435 (+) True G1486811
TU1705667 other downstream 135720 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 135720 78189012 ~ 78190290 (+) False G1491963
TU1705741 other downstream 199337 78252629 ~ 78253308 (+) True G1492003
TU1706084 other downstream 717455 78770747 ~ 78773759 (+) False G1492310
TU1706085 other downstream 719937 78773229 ~ 78775727 (+) True G1492310

Expression Profile