RNA id: XM_036950712.1


Basic Information

Item Value
RNA id XM_036950712.1
length 970
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC118940495
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78056325 ~ 78060810 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtacagtttGAGAGGCAcactaggtagccatttgataagGCGGATCAACAATGagAGGCCCATGAGAAGATCCTTGGTGTTCCCAATGGAAACTGACAACAGCTACGTGGAGCTGGTCCCTCAGAAGGATCTTGACATGGGAGCCTTCACCCTGTGCATGCGGGTGGCCACAGAATTGGCAGAGGGCAACCagAGGCCCATGAGAAGATCCTTGGTGTTCCCAATGGAAACTGACAACAGCTACGTGGAGCTGGTCCCTCAGAAGGATCTTGACATGGGAGCCTTCACCCTGTGCATGCGGGTGGCCACAGAATTGGCAGAGGGCAACCGTGAGATCATCTTGTTCGCCTACCGTACACTGTACCACGACGAGCTCAACGTGTGGAGAGAAGCTGACGGCAGGTACGGTCTGTTTATGAGTGGGGACGGGGTCCTCTTCCACCTACCTGAGCTCAACACCTTCCAGACCCACCTCTGTCTCACCTGGGACTCGAAGTTAGGTATGGCTGCGTTCCACGTAGATGGGAAGAGGAGCATTAGGAAGGTGTATAAACCAGGACACAAAGTGCAGAAGGGAGGTAAGGTCATCCTGGGACAGGATCCAGACTCTTTCCTGAAGGACTTTCAAAGCAAGCAGAGTTTCATCGGAGAGATCACAGACGTCAACATGTGGGACTACGTGCTCTCCGATGCCATGATAGAGGCTTTGCATGTTGGGAAACGTATGCCCAGAGGGAACGTTTTTGACTGGGAAACCATAGAGCTCATAGTCAATGGGAACGTCAAGGTGATCACTGAAGAGTTGTAAGGTGTCCCCAAGGCACCAACAACATGCTCTCCATCCAGGGGTGCTGCACTGCGGCCTGACCCTGTGCTCTCTcaactgtgtgtcagtgtgatgtACATTATCTGAGGAAGTTAAGAAATTACAGAAAATTCATATGGAGAATAAAGTTGTATTAGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1705560 lncRNA upstream 45610 78010586 ~ 78010787 (+) True G1491892
TU1705557 lncRNA upstream 46274 78009105 ~ 78010123 (+) True G1491889
TU1705553 lncRNA upstream 48144 78008029 ~ 78008253 (+) True G1491885
TU1705488 lncRNA upstream 98591 77957603 ~ 77957806 (+) True G1491831
TU1705033 lncRNA upstream 187482 77794792 ~ 77868915 (+) True G1491417
TU1705614 lncRNA downstream 25257 78086067 ~ 78086589 (+) True G1491925
TU1705617 lncRNA downstream 29369 78090179 ~ 78090496 (+) True G1491928
TU1705628 lncRNA downstream 61519 78122329 ~ 78122539 (+) True G1491939
TU1705630 lncRNA downstream 63416 78124226 ~ 78125219 (+) True G1491941
TU1705636 lncRNA downstream 72378 78133188 ~ 78133414 (+) True G1491947
XM_036947917.1 mRNA upstream 3105 78050969 ~ 78053292 (+) False tcbp2
XM_036947916.1 mRNA upstream 3105 78050992 ~ 78053292 (+) False tcbp2
NM_001281421.1 mRNA upstream 3196 78051765 ~ 78053201 (+) True tcbp2
NM_001124198.1 mRNA upstream 19702 78031487 ~ 78036695 (+) True lbp/bpi-2
XR_005037083.1 mRNA upstream 26865 78028591 ~ 78029532 (+) True LOC110494613
XM_021569840.2 mRNA downstream 23912 78084722 ~ 78085995 (+) False si:ch73-303b9.1
XM_021569842.2 mRNA downstream 24100 78084910 ~ 78085995 (+) True si:ch73-303b9.1
XM_021569847.2 mRNA downstream 330095 78390905 ~ 78395729 (+) True LOC110494621
XM_021569848.2 mRNA downstream 335426 78396236 ~ 78403164 (+) False odad1
XM_021569850.2 mRNA downstream 335426 78396236 ~ 78403164 (+) False odad1
TU1705568 other upstream 36581 78018368 ~ 78019816 (+) True G1491899
TU1705554 other upstream 47598 78008290 ~ 78008799 (+) True G1491886
TU1703557 other upstream 1372377 76683599 ~ 76684020 (+) True G1490016
TU1700469 other upstream 3647208 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 4076962 73978890 ~ 73979435 (+) True G1486811
TU1705667 other downstream 128202 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 128202 78189012 ~ 78190290 (+) False G1491963
TU1705741 other downstream 191819 78252629 ~ 78253308 (+) True G1492003
TU1706084 other downstream 709937 78770747 ~ 78773759 (+) False G1492310
TU1706085 other downstream 712419 78773229 ~ 78775727 (+) True G1492310

Expression Profile