RNA id: TU1706388


Basic Information

Item Value
RNA id TU1706388
length 674
RNA type TUCP
GC content 0.50
exon number 4
gene id LOC110493260
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78086079 ~ 78088852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgcggcttttgtggagcgatgggtaacgacgcttcgtaggcgtcagttgttgatgtgtgcagaaggtccctagttcgtgcccgggtatgggcgaggggacggtctaaatttgtactgttacattgatgctgttgacccggattactggttgctgcggaaaaaggaggaaggtcaaaagggtccctagttcgcgcccgggtatgggcgagggcacGGTCTAAACTTGTACTGTTACAGATGACtcaagactgggttcgtgcagataaccaacaatttacgacgtttggaatgagactaacgtgagGATGTCGTTTTCCAGTGGCTAATGGGTGATAAAATGTATCTGAACCAGATAGATGCGGAGGACCCCGAGATCCCAGATTACACCATGCTACCAGACACAGGCTGCCTGTCTGTGCGACTACGAGTATGCTTGCAAGAGGGAGAGGAAAACCCACGAGACTTTACCTCCCTGTTTGACATGTCTACTCAAGCTATCAAACACTTTTCCCCAAGTCATCAGTTCCTACAAGCAGATGTCAAACATGAGCCCCTCCAGCTGATCACACCTCAGTTTGAGACTCCCCTTTCCCAGCTG

Function

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0005930 axoneme cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1706369 lncRNA downstream 13454 78073214 ~ 78074149 (-) True G1492559
TU1706384 lncRNA downstream 37538 78049740 ~ 78050065 (-) True G1492574
TU1706383 lncRNA downstream 37931 78049263 ~ 78049672 (-) True G1492573
TU1705556 lncRNA downstream 78959 78008397 ~ 78008644 (-) True G1491888
TU1705555 lncRNA downstream 79310 78008056 ~ 78008293 (-) True G1491887
TU1706368 lncRNA upstream 37096 78125948 ~ 78131989 (-) True LOC110493261
TU1706408 lncRNA upstream 44541 78133393 ~ 78133687 (-) True G1492598
TU1706409 lncRNA upstream 45178 78134030 ~ 78134363 (-) True G1492599
TU1706432 lncRNA upstream 90513 78179365 ~ 78179674 (-) True G1492620
TU1706452 lncRNA upstream 160455 78249307 ~ 78249572 (-) True G1492638
XM_021569838.2 mRNA downstream 3352 78075348 ~ 78084251 (-) True LOC110494615
XM_036950713.1 mRNA downstream 15006 78062178 ~ 78072597 (-) False LOC110494616
XM_036950715.1 mRNA downstream 15006 78062178 ~ 78072597 (-) False LOC110494616
XM_036950716.1 mRNA downstream 15006 78062178 ~ 78072597 (-) True LOC110494616
XM_036950714.1 mRNA downstream 15154 78062178 ~ 78072449 (-) False LOC110494616
XM_021569843.2 mRNA upstream 9816 78098668 ~ 78118470 (-) True LOC110494618
LOC110493261 mRNA upstream 33843 78122695 ~ 78132472 (-) False LOC110493261
XM_036950721.1 mRNA upstream 46242 78135094 ~ 78150682 (-) False LOC110494619
XM_036950720.1 mRNA upstream 46242 78135094 ~ 78150684 (-) False LOC110494619
XM_036950718.1 mRNA upstream 46242 78135094 ~ 78186269 (-) False LOC110494619
TU1704739 other downstream 605214 77481941 ~ 77482389 (-) True G1491128
TU1703698 other downstream 1389507 76696796 ~ 76698096 (-) True G1490147
TU1702105 other downstream 2562007 75525182 ~ 75525596 (-) True G1488708
TU1701641 other downstream 2823380 75263720 ~ 75264223 (-) True G1488266
TU1701218 other downstream 3187856 74899391 ~ 74899747 (-) True G1487872
TU1706362 other upstream 126147 78214999 ~ 78219043 (-) True LOC110494620
TU1706560 other upstream 384166 78473018 ~ 78475506 (-) True G1492729
TU1706741 other upstream 681888 78770740 ~ 78771954 (-) True G1492897
TU1706762 other upstream 689500 78778352 ~ 78781395 (-) True G1492910
TU1706752 other upstream 715008 78803860 ~ 78813955 (-) True G1492901

Expression Profile