RNA id: XM_036950721.1


Basic Information

Item Value
RNA id XM_036950721.1
length 4313
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110494619
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78135094 ~ 78186269 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAAGGATAGAGgaggtgatgagaggagagggtgttTGTGTAGctcggcagagagagagagatctacagcttttctgcctgtctctgtgaaacagagaggagaagagtaaGGTCTTCTCGTTCACAAGCTTATCTGTGTGTGGCTGCAGATGAACTTGCAAACGTCAGATGCCTGCAGCCACCAAGGTTTCTTCCCAAGAACCAGGGACACTGCAGCACAGGGACACTGCAGCACAGGGACACTGCAGCACAGGGACACTGCAGCAGAGGGACACTGCAGCACAGGGACACTGCAGCCTGCCCTGGAGCCACTGACCTGAACTACAGCTAccggagtgtgtttgtgtgtgtgagagagagcctgTCAGAGTAATTGATGTGTGAGCGTGTGCCTGTATGGCTAAGCAGCAGTAGCCTGCTAgagtaatttgtgtgtgtgtgcacccttTCACGGCTCTTATCAGCTGTTCAGTACACACGGCGGTAGGGTAGGAGGGGGTTGaggaagaagtgtgtgtgtgtgtgtgtgtgtctgtgaggcaTTCTCAGGTGAGCAGTGCTGTAATTGGAGGCTAAGCTTTGATACTCTGACTCTGTGACACCGGCATGTGTGTGTGATACCGGTGTCAGAGCACACATGACAGGAGGAAGTGACACAGCTCTACTCGCGCTCTCCGATTTCCTGAAGCCTCTCTGGTGGAACGCTGTACGGACCCAAATCTAAGccgacctcccctctcctcacctcccctctctcttcacccctgaTCCTGTAGTCCAAGCCTATCTGGATAGCTACAGACACAGGACTGTGAACGACCGGCAGTGGATGCTTGTATTGAGAGAACTGAGCAATACTTGGACTGTGAGCTTTAGTGGTGTGTGTCCGTATATTGAGCTACCAAGGGACTGGCTGTGGATTCAGAGTGGAAGTGAAGAGCTCTAGGACTGAGCATTGTGAACAGTGTGTGTTACTGAATGACTCGACAAACAGAGAATCCCCTCCTTGGGAACAATCAGAATTCCTCCTGCGGCTCTGCTGGGTGTCTATAGGCAGCCGAGGGCTCGTATTTAACTCCTAAATGACGGGCAGCAACAGCATGAGCAGCGGCTACTGCAGTCTGGACGAGGAGGGCGAAGACGTCACCTTCTTCACCGCAAAGACCACCTTCTTCCGCCAGCCCCCAAAGCTGGTTAAGAATGAGGTCAAAGAGGAACAGGAGGGAGGACCCAAGGCTCTGTCAGAGAAAGAAGTGCGTGCCAGGATAGAGGACTACAACTCTAACGTCTCAGAGAATGGCATGAAACTGGCTGCTGATGGTTTGTACACTGGCTTCATTAAGGTCCACCTCAGGCTGAGTCGGCCAGTCACGGTGCTTGCTGTGGAGGGTGCGGGATTAGAGGAACTGTCAGGCAAGCCAGACAGACGCGGTCGACCAATGACGGTGTCAGAGGgccaggagggagagggagcggggtTGAGTGACAAGCGGACGTCGTTCTACCTTCCCAGTGACTGTGTGAAGCAACTCCACATCAGTAGTACTACCACAGTCAGGGAGGTCATACAGGGCCTGCTGAAGAAGTTTATGGTGCTGGATAACCCACGCAAGTTTGCcctgtacagacagacataccGCGATGGACAGGATCTGTTCCAGAAACTTCCTCTGGTGGAGTGTCCTCTCTGTCTGAGACTGGTGGCAGGGCCAGACCCTGAGCTGCTCAGCTTTGTCCTCAAGGAGAATGAGACCGGAGAGGTGGAgtggCATGCGTTTTCAGTTCCTGAGCTGCAGAACTTCCTGGTGATTCTGGAGAAGGAGGAGACTGAGCGTGTGCGATTGGTGGAGCAGAGATTCACAGCTTACCGACAGAGATTGCAGAAGGCACTATGCGAGCATAAACCCTGATCCCTCACCCTTGATCCCTCATCCCTAATCTCTCACCCTGACCCTTCAACCCTCACCCTTCTGTTGAcccagggagagacaggagaccaCTGAAGCTCACAGACTACTATTCTCCCCTCATTACACGGTcagcccccctccatccctcctcctcaccccccttGAGAAGAGAGGAGGGCTTGAGAAAGCATGGAAAGGGAAAAGGGGACTGATTTAAAGGGCGAGTGGGCAGGATTCTGGAACATAATCAGTGTTTCCCTGGGAGGTGAAAGACACGATGAACTGACGGACCCTCTGGGCTCAGATATCTCATTTTGGTCTGACAATGTGACCTGATGGGTCTCCTAATGTTACATTGAATCTCAGTTTGGTCTGATTATGTTTTTAAGattatactgctgctgctgcaagtGTTACTTATTTACTTACTTATGTATTTACTAAGGCATGAGTCTCTCCCTGCTCTATCTGCCCCAGCACCCCTGCATAAAGATTCAGATGGACTAGAACAGACATTACCATTCAAAACAACGCTCCATGGTGGATGGATCATTTGGAATGTTCCATTACTTGATGTTTACGATATCAACTCTCAGGTTGTCCCTGCATGCCTTCTGTCCAGGGTCGAGGGTAGGTTAGGAGGGTAGGAGACGGGTGGGTATGCTTGGGTTGGGAAGTAGGGTTGAGATGCTGGGGTAAAGCTATGTTCGTCTTCATCTTCAGACTCCTCTCATGTCAGTCCCAGGGATGTACACCAGTGTTTCTCATAGAACTGCTCTGCTGAGCTAAGGAAGCAACAGAAGAAGACCTGAGCTCTCTATCCTAATTTATTTATCCAGCGCTGAAATAACCCCTCTATCTCAGGCGGCTAACTTTCACTTAATCCTGCATCTCCATCTACCTGGGTAACCATGCTAGCGTGGGAGGTGTGCAGATAGACGTATATACAATAGATAATCTCCATCTATCTGGGTAACCATGCTAGTGTGGGAGGTGTGCAGATAGACGTATATACAATAGATAATCTCCATCTACCTGGGTAACCATGCTAGTGTGGGAGGTGTTGTGCAGATATATGTGTATATCATAAATAGATGCTATTCCCATAGACACTAGTCTCTTCAGATAGCCATTGAGTACCCTGACTACATTCACATAAACAGAGACATATGTCTTATGTACCTGTTATTCATTCACCCATCCTACAGAAGCTATGTCTTCTGTACCTGTTATTCATTCACCCATCCTACAGAAGCATACCGTATGTAAACAATCAGTAGATTCCTTCATTGCATGAATCGTCTGCTGGAGTTTGAAGCAATTACAAACAGTTGATGTTTTGACTCTTCATATACTCTTCACCCTTCCCTCATCAATAACCTCTGACCTTTATCTCCTGACCCCTAACCTGGAAATGTACATTTCTCCTGATGGGAGACTGCTTTGCTGCTGTTCCCAGTGTCTGTGGAGAAGGTATGCAGCTGTAGCTACTGTTGTTAGAGGCCTGTTAGAGCCAGCCACTCTGTGCTGCTGTGACGGGCCCCTGAAGCCCTGCTACTGAGCCGACTGTTACAGGACCGAGTGAATGAGGAACTGATGCTCAAACACTGATTGAGGGTCAAAATGTCATCTGCCAGTAGTTGTTCCTGGTCAGTTCATGTAGTTAGGAAAAACTCCTGTTCCTATAGTTCATTGAGCTGAGAAACCCCATTCTGGTGATCACACCAAAGTTAAAAGGGACAGGGGCCGTGGGATATGCCTGACTGAAAAGATGACGTATTGTAGGAAAAAACTTTTTTGCACACTAATTCTGCCCACAGATTGGTCTGCCAGTCTGTATAGTATCCAAGAGAAGGAGCATGAAATTTGTGcttttttcattcattttttaaGGGAAATTGATCATACAATTAATGTTTATCTGAGTGTGATGCAAATGTATACATTGGAggacaaattattattattgattatAACTATTGTTAGTTGAATTGGTGTGTGCGTCTGGGCTGAAGATAAAGGTATAAATGTTATATGATAGTTCATATCTATTCCAGTCAGTCTCTCTCATCGTCCAAAAGCACATGCCTTCCTGATGCTGAGTCCCTTCATCAAGCCTGTTTTATTCCTGCCCTCACAGGGCTTATAGAAgccacacaaacagatctgagaccagacTACATGTCAACGATGGAAACcataagattgtgtgtgtgtgtctttgtgtgtgtgttatttattttatggTTCACCCCCTTCGGCTTGGTGTTAAGTGTCAGAGGATGTGGGCAATCAATGCTTTCCAATAATCTCTTAGTTTGGTTTATCTGAAGAATcagatgtgtatatagatatctgtaaaaaaaaatgaagaatTAAATAAATGTCATCCTTTAATGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1706409 lncRNA downstream 731 78134030 ~ 78134363 (-) True G1492599
TU1706408 lncRNA downstream 1407 78133393 ~ 78133687 (-) True G1492598
TU1706368 lncRNA downstream 3105 78125948 ~ 78131989 (-) True LOC110493261
TU1706369 lncRNA downstream 60945 78073214 ~ 78074149 (-) True G1492559
TU1706384 lncRNA downstream 85029 78049740 ~ 78050065 (-) True G1492574
TU1706432 lncRNA upstream 28683 78179365 ~ 78179674 (-) True G1492620
TU1706452 lncRNA upstream 98625 78249307 ~ 78249572 (-) True G1492638
TU1706453 lncRNA upstream 99551 78250233 ~ 78250517 (-) True G1492639
TU1706457 lncRNA upstream 107748 78258430 ~ 78258700 (-) True G1492643
TU1706465 lncRNA upstream 142779 78293461 ~ 78293956 (-) True G1492650
LOC110493261 mRNA downstream 2622 78122695 ~ 78132472 (-) False LOC110493261
XM_021569843.2 mRNA downstream 16624 78098668 ~ 78118470 (-) True LOC110494618
XR_005037084.1 mRNA downstream 46967 78086079 ~ 78088127 (-) False LOC110493260
XM_021569838.2 mRNA downstream 50843 78075348 ~ 78084251 (-) True LOC110494615
XM_036950715.1 mRNA downstream 62497 78062178 ~ 78072597 (-) False LOC110494616
XM_036950725.1 mRNA upstream 39417 78190099 ~ 78213898 (-) False ikbke
XM_036950723.1 mRNA upstream 39417 78190099 ~ 78214359 (-) False ikbke
XM_036950724.1 mRNA upstream 39417 78190099 ~ 78214386 (-) True ikbke
XM_036950729.1 mRNA upstream 67149 78217831 ~ 78356368 (-) False LOC110494620
XM_036950726.1 mRNA upstream 67149 78217831 ~ 78389849 (-) False LOC110494620
TU1706388 other downstream 46242 78087603 ~ 78088852 (-) True LOC110493260
TU1704739 other downstream 652705 77481941 ~ 77482389 (-) True G1491128
TU1703698 other downstream 1436998 76696796 ~ 76698096 (-) True G1490147
TU1702105 other downstream 2609498 75525182 ~ 75525596 (-) True G1488708
TU1701641 other downstream 2870871 75263720 ~ 75264223 (-) True G1488266
TU1706362 other upstream 64317 78214999 ~ 78219043 (-) True LOC110494620
TU1706560 other upstream 322336 78473018 ~ 78475506 (-) True G1492729
TU1706741 other upstream 620058 78770740 ~ 78771954 (-) True G1492897
TU1706762 other upstream 627670 78778352 ~ 78781395 (-) True G1492910
TU1706752 other upstream 653178 78803860 ~ 78813955 (-) True G1492901

Expression Profile