RNA id: XM_036950727.1


Basic Information

Item Value
RNA id XM_036950727.1
length 4271
RNA type mRNA
GC content 0.54
exon number 24
gene id LOC110494620
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78214999 ~ 78389849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAGCATAACTGACTCCGCTCCTTGATTTTATGCCAATCCTAATCAATTCAACCAATCAAAAGATGGAAAACTCTCCTCTTGTTCCATGAAAAGAGGCGGGGTTATTTTGGAGAATTTGTGAGAAAAACACCCCAAAACTCTTCATAAGGGACGGAAATGAAATAGGAAAGCTCGTATTTGTCATCGAAATCGACATAAGAGGGGGAAGAGCATAGAGCCAAGGAGCCAGCCCAGCCTCTGACCGTCGTGGTGACAGCCACTTACTGAAGGACTAAACTTTTTAGGAGTCTCCTCATCCGACCTTGCTGACTCGTTGGTTATTGTTGGTTTGGAGGGAATGCATATATCCTCCGTTTGCTCTGTAACTGGTTTTGAGGACACATTAAGGAAAGGATCCAAACGAATGGGAATGCGGCAGCGCCAAACTCTCACAATGCGGGCAGAGTGAAGGGGCAGAACACAATACCATTCCACGGGCTGTGGGGGTTACTCGCTACAATCTTTCAGTGGGGTATTCTTCCAGACGAAATATCATAGTTACTCTTTTTTTTCCTGATTACTTCTTTAACCCAGTATTGCGAAGTCTAGTGTTTTTGAGTAGAAGAACCAGCCATGACGTCTCCGGCCAAATTCCGAAAGGACAAGGAGATCGTAGCCGAATATGAAACTCAAGTTAAAGAGATCCGTGCCCAGCTGGTGGAGCAGTTCAAGTGTCTGGACCAGCAGTGTGAGCTGAGAGTGCAGCTGCTGCAGGACCTGCAGGACTTCTTCAGGAAGAAGGCGGAGGTCGAGATGGACTACAGTCGTAACCTGGAGAAACTGTCTGAGAGGTTCCTTACGAAGACACGTAGCACCAAGGACCACCAGCTCAAgaaggAGCAGAGTGTACTGTCTCCAGTTAACTGTTGGAACCTGTTGTTGAGTCAGGTGAAGAGGGAGAGCCGAGACCACGCTACCCTGTCTGACCTCTACCTCAATAACATCATACCGCGCTTCGCCCAGGTTAGCGAGGACTCCGGACGACTCTTCAAAAAGAGTAAAGAGGTTGGTGTCCAGCTTCAGGAGGATCTGATGAAGGTTCTGAACGAGCTCTACGCGGTGATGAAGACATACCACATGTACAACACAGACAGTATCAACTCTGAGAACAAACTGAAGGATGCAGAGAAACAGGAGGAGAAGCAGATGGGGCGCTCTGGTCGCCAGGACGACAGACAGACTCCCAGGTCACCTGACACACTGGCCAGCATCAAGACGGAGGAGAAACATGTCCGACGCTCCTCAGTCAAGAAGATAGAGAAGATGAAGGAGAAGCGGCAGGCTAAGTACACAGAGAACAAGCTGAAAGCAATCAAGGCAAGGAATGAATACCTGCTGGCTCTGGAGGCTACAAACAGCTGTGTCTTCAAATACTACATCCACGACTTGTCTGATATCATCGACtgCTGTGACCTGGGCTACCATGCCAGTCTCCACCGTGCGTTGCGGACCTACCTGTCAGCCGAGATGAACGTGGAGGCATCTAAACACAGCGGTCTGGAGGGCCTGGAGGGGGCAGCAGAGAGCCTGGAGCCCAACGGGGACAAGCAGAGACTGATGGAAACCTACAACAACGTCTTCTGTCCCCCCATGCGCTTCGACTTCCAGTCACACATGGGAGACACgatgggGTTAGTCTGTGCCCAGCAGCCGTTAGAAGGGGAGTTACTCCAGAGGTGTCAGCAGCTGCAGTCCCGTCTCTCCACCCTCAAGATTGAGAATGAGGAGgtgaagAAGACTATGGAGGCCACTCTGTCGACCATCCAGGACATGGTCACCGTGGAGGACTATGAGGTCAGCGAGTGTTTCCACCACAGCAACTCCATGGAGTCGGTCAAGTCCACCATGAGCCAATCATTCCTCAGCAAACCCAGCCTGGCCAAGAGACGGGCCAATCAACAGGAAACGGAGCAGTTCTACTTCACTAAATTGAAGGAGTTTCTGGAGGGCCGGAACTTGATCACCAAACTGGAGGCCAAACATGACTTGATCCAGAAGACCCTAGGAGAGAGTCAGAAGACTGACTGTTGCCTTGCCAGtgaCAGGAGGAACTCTGCACTACGGAATCAGGCTGGCCATGTCATCCCTCTGATGGTGGAGAGCTGTATCCGCTTCATCAGTCGCCATGGTCTGCACCATGAGGGCATCTTCAGAGTATCTGGTTCTCAGGTGGAGGTCAATGACATCAAGAACGCCTTTGAGAGAGGTGAGGACCCATTGGCAGGAGATCAGAATGATCATGACATGGACTCCATCGCTGGTGTTCTCAAGCTCTACTTCAGAGGACTGGACCACGCCCTCTTCCCCAAGGAAGTCTTCCATGACATCATATCCTGTGTCTCAATGGAGAACCTGCAGGAGAGGGCTGTCCACATCAGGAAGGTTCTGCTGACTCTGCCCAGCAACACTCTCATCATCATGAGATACCTGTTCGCCTTCCTCAACCAcctgtCCCAGTACAGTGAGGACAACATGATGGATCCCTATAACCTGGCCATCTGTTTTGGTCCCACTCTGATGTCAGTCCCAGAGAGCTGTGACCAGGTGTCCTGCCAGGCCCACGTTAACGAGCTCATCAAGACCATCATCATCCTCCATGACGGGGTTTTCCCCGGACCAGGGGACCTGCAGGGGCCCGTCTACACCTGCCCAGGGGCCACCGACGAGTACTGtgagcCACCCCTAGTGGAAGAACCTGCTCCTGACACCATCTCTGTCATCCACAACAGCGATGATGGCTTGTTGGTCGTTTCAGAATCTGACCCAATAGTGGCCATTGCTCGCTTCGACTACTCTGGACGGACCAACCGGGAGCTGTCGTTTAATAAGGGCgcatctctcctccttttccaGCGAGTCAGTGATGACTGGTGGGAGGGCCAACACAACGGAGTGGACGGACTAGTGCCTCACCAGTACATAGTGGTTCAGGACATGCAGGACGGGGGCAGAGGCAGTCCTAAGACTGAGGCGGAGTTGCAGGAGGAGAGAGTGTCCACTAGGGGCATCGCTGCCTCTCCCACTGGAGCTCATGTAGCTGACGTCTACCTGGCCAACCTCAACAaGATGAGGAAGAAGCCGGAGTTAGGGAGTATCCGTAGAACCTTCCGGGTGTctgagggaggacaggggggtgACGTACCCCCAACGGGGGCGACTGGTGGGGGTGTGAGGACGGCCAGTCTGCCTGTGGGAGGGGCTCTGGTGAAAGAGGGCGGGGACAAACGACCAGTCAGCGCTCATAGTGTCCTCAACTCCTCCATTACACGCCACTCCTCTCTCAAGACCAAGGTGGAAAGCCCTCAGTTCCGCAAAGCGACCACAGCGGGGCGCTCTAAGAGCTTCAGCAACCACAGACCTCTGGACCCTGAGGTCATCACTCAGCTGGAGCCCACCTCACAGGATATCGAGGCGGCTATGAGCTCTGCTCTGAGAGAGCTGGAGAGGCAGAGCAGtgtccagcacacacacacccccgacGTGGTGCTGGACACTCTGGAGCAGCTGaagggtgtgtgtggtgggggaggagggggcacATCAGAGCCCTCCAGTCCCCTACACTCCCGTCTGCTGAGGGACAGTGACGGCGCAGGATCTCCACACTCACACCCCCTCCAACGCAGCGCTTCGTCCGCTAGCGACGTCCCCTCCTCCTTCCGCCCTTCCTATCCCAGGagccccctgccctcctctctcgcctcctcagccctctctttctccactccctcCTTCCGAGAGCCTCGTCCTCCAGCCACGCGGCCCAAGCCGGTGGTCTTCCCCAAGGGAGGAGGAAGCAGCAGTCCGGCTATGGGGTCCGCAACCTCCACtgttccccctcctcccccacccccaccccagccCAACGACAAGTCCTGCCCCGCCTGAGGAGTGACATCACACATGCTCCCCTTCCATACACAAACCACTGCCCCATCTCCCCTCACCCAATGACAAGTGGAATAGCTCTcacctaggatcagcttaccctcccaAACTAAGCATTATGGGAGTTagactgtataaagcctccatgACTCAAACAAGGGATCAAAACGAACATACAGCATGACAATAAAGAGACATGGAACCTGTGCTGTATATActggtgtgaggtgtgtgtgtgagagcgtgtgtgtgtgcctgtgtgagttgtgtgtgagcgtgcctgtgtgaggtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1706432 lncRNA downstream 38157 78179365 ~ 78179674 (-) True G1492620
TU1706409 lncRNA downstream 83468 78134030 ~ 78134363 (-) True G1492599
TU1706408 lncRNA downstream 84144 78133393 ~ 78133687 (-) True G1492598
TU1706368 lncRNA downstream 85842 78125948 ~ 78131989 (-) True LOC110493261
TU1706369 lncRNA downstream 143682 78073214 ~ 78074149 (-) True G1492559
TU1706526 lncRNA upstream 15855 78405704 ~ 78405931 (-) True G1492695
TU1706527 lncRNA upstream 16109 78405958 ~ 78406190 (-) True G1492696
TU1706528 lncRNA upstream 17183 78407032 ~ 78407276 (-) True G1492697
TU1706530 lncRNA upstream 22100 78411949 ~ 78412840 (-) True G1492699
TU1706532 lncRNA upstream 26506 78416355 ~ 78416747 (-) True G1492701
XM_036950724.1 mRNA downstream 3445 78190099 ~ 78214386 (-) True ikbke
XM_036950723.1 mRNA downstream 3472 78190099 ~ 78214359 (-) False ikbke
XM_036950725.1 mRNA downstream 3933 78190099 ~ 78213898 (-) False ikbke
XM_036950719.1 mRNA downstream 31562 78135094 ~ 78186269 (-) False LOC110494619
LOC110494623 mRNA upstream 37850 78427699 ~ 78432573 (-) True LOC110494623
XM_036948232.1 mRNA upstream 94540 78484389 ~ 78508098 (-) True LOC110494625
XM_021569867.2 mRNA upstream 253066 78642915 ~ 78651843 (-) True LOC110494630
XR_005036719.1 mRNA upstream 351353 78741202 ~ 78836394 (-) False LOC110493264
XM_021569887.2 mRNA upstream 902597 79292446 ~ 79297728 (-) True LOC110494643
TU1706388 other downstream 128979 78087603 ~ 78088852 (-) True LOC110493260
TU1704739 other downstream 735442 77481941 ~ 77482389 (-) True G1491128
TU1703698 other downstream 1519735 76696796 ~ 76698096 (-) True G1490147
TU1702105 other downstream 2692235 75525182 ~ 75525596 (-) True G1488708
TU1701641 other downstream 2953608 75263720 ~ 75264223 (-) True G1488266
TU1706560 other upstream 83169 78473018 ~ 78475506 (-) True G1492729
TU1706741 other upstream 380891 78770740 ~ 78771954 (-) True G1492897
TU1706762 other upstream 388503 78778352 ~ 78781395 (-) True G1492910
TU1706752 other upstream 414011 78803860 ~ 78813955 (-) True G1492901
TU1706748 other upstream 417290 78807139 ~ 78815429 (-) True G1492898

Expression Profile