RNA id: TU1706362


Basic Information

Item Value
RNA id TU1706362
length 3847
RNA type TUCP
GC content 0.49
exon number 3
gene id LOC110494620
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78214999 ~ 78389849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGGGACAAACGACCAGTCAGCGCTCATAGTGTCCTCAACTCCTCCATTACACGCCACTCCTCTCTCAAGACCAAGGTGGAAAGCCCTCAGTTCCGCAAAGCGACCACAGCGGGGCGCTCTAAGAGCTTCAGCAACCACAGACCTCTGGACCCTGAGGTCATCACTCAGCTGGAGCCCACCTCACAGGATATCGAGGCGGCTATGAGCTCTGCTCTGAGAGAGCTGGAGAGGCAGAGCAGtgtccagcacacacacacccccgacGTGGTGCTGGACACTCTGGAGCAGCTGaagggtgtgtgtggtgggggaggagggggcacATCAGAGCCCTCCAGTCCCCTACACTCCCGTCTGCTGAGGGACAGTGACGGCGCAGGATCTCCACACTCACACCCCCTCCAACGCAGCGCTTCGTCCGCTAGCGACGTCCCCTCCTCCTTCCGCCCTTCCTATCCCAGGagccccctgccctcctctctcgcctcctcagccctctctttctccactccctcCTTCCGAGAGCCTCGTCCTCCAGCCACGCGGCCCAAGCCGGTGGTCTTCCCCAAGGGAGGAGGAAGCAGCAGTCCGGCTATGGGGTCCGCAACCTCCACtgttccccctcctcccccacccccaccccagccCAACGACAAGTCCTGCCCCGCCTGAGGAGTGACATCACACATGCTCCCCTTCCATACACAAACCACTGCCCCATCTCCCCTCACCCAATGACAAGTGGAATAGCTCTcacctaggatcagcttaccctcccaAACTAAGCATTATGGGAGTTagactgtataaagcctccatgACTCAAACAAGGGATCAAAACGAACATACAGCATGACAATAAAGAGACATGGAACCTGTGCTGTATATActggtgtgaggtgtgtgtgtgagagcgtgtgtgtgtgcctgtgtgagttgtgtgtgagcgtgcctgtgtgaggtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcctgtgtgaggtgtgtgtgtgaggcgtgtgtgtgtgagcgtgcctGTGTGAGCGTgcctgtgtgaggtgtgtgtgagcgtgcctgtgtgaggtgtgtgtgtgaggcgtgtgtgtgtgagcgtgcctGTGTGAGCGTgcctgtgtgaggtgtgtgtgagcgtgcctgtgtgaggtgtgtgtgtgtgtgtgtgtgtgagcgtgcctgtgtgaggtgtgtgtgtgtgtgagtgtgcctgtgtgaggtgagtgtgtttgtgtgagtgtgcctgtgtgaggtgcgtgtgtgagtgtgcctgtgtgaggtgagtgtgtgtgtgtgaggtgtgtgtgtgagtgtgcctgtGTGAGGTGCGTATGTGAGTGTGCCTGTgtgaggtgagtgtgtgtgtgtgaggtgtgtgtgtgagtgtgcctgtGTGAGGTGCGTGTGAGCCATCctggacagaaagagacagagatggacagacagatggatggatggagagagcagtgGAATGCCTCTTTCTACGTGAAGAGAAGAGGACCAGGCTATGTCTCTGATCCTCCTGTGTGTAGGCAAGCTGAGTGTTGTGGTGACTCGTTCTAACAACAACGCTCACCAGTATAGCTGCTATACACCACGCTATTTTCTACTGAATTCTACTAGACTCTACTATACTATTCATCAGGGCTATTCAATTAGCACCCCTCAGGGGCCAAAGGAATGCTGCTTTACTTTTCTAAGTGGAAGTTGTAATGTAATTGATTGGCCAGAGAGCCCAATCACCAATGTCCcaggtgtgtattgatggggCCCTGCAGGACAATAGTTAAAAGTCCTTCTCTACATTCTGTATTTACCCACATAATGCAACGCTTGTCTAGCTTTCCAACAGCACCTCCTGCTGGTGTTTATGTGCACGACATGGCTATTCTCAATAACCAACCTTTCTTTAGCAATAAGAGTCTGACAGACTCATCAGCTTAGCAGCATGCCAGGcctgctgcttctctctcccttaGATTCCCAGCATTAATATACGCTATGTTACAGAAGTggaatagacacacacatacacatgtgtgtgacgtgtgtgtgtgtgtgtgttctgtggcaGCTAAATGCCTTTCAGGTTCTCCTCGCATGCTGGGGCCACAGCAGTCACAGTGCTGACTGACTGCATCTATTTTCAATACTACCAAACGCGCCTCTTACACCAGCTTCACACAAATTATTACTACAGACAAAATCAGCAAAAAGGGTATTTTTACATGTATAGTTTATTAACCATGGTGATAACTGGACATGTGCAGATGAGGAATCTCAGTGAGGTGGAAGAGTTTGTTTAGATACAAGCACAAACAAACCTCGTCAAGCGCATTCATAAACATTACTTTATGCTTATTTTCTTCCACTTGTTAGTTTATCCTCAGAATATGTAATACTAAACTGTGTAAccgtctacgtgtgtgtgtggggggtgtgtgtgtgtgcgtcagtgaCCCTTCACAACTCTCAGAAGTCAGCGTTAACCACTCATCATTAAGGGAACCAACTAATGCCTGCTCTTTGGAGACATGGGGACCAACAGGATGGGACACAAAGACAGCAGAACCTGTGTCGCCAGAGCCACTCTGCTACCAGTATCACTGATCACTAGGCTTAATGTTTGTGTGACTGACTAGTTCTCAGTCCCAGCCGCTAAAGTCAGAGGACAACAGGAAAAGTGTCACACTGTCTCCTCTGTCGCTCCTCTTCCAATAGCATTGATGTTTGTCATGGCAGACCGGCATCCAATAACTGATTGGATTGATATAATCCAATGAAATGATATACAGGAACAGCCCTGAGGTCTGTTCTGTTGTGCTCGTCTTTAAGAGAACTTCTGCTGTGACTCCCTAACTGTCTGTTACATCATGTGGTCAATCTCCAAccggtcctgtcctgtctgtcactGTGGTAGCATTTTCTGAAGTCTGAACTGTGATTCGtcaaggggaggagacagaatgttttgaTTGGTCAAGGTTAGTGGGAGGCGGCAGGATGCTTTAGTTATTGACAGCTTTAACACTGTCTGAGACCAGGATATTTAATGTCAGGGCTTCGAGATCCCTGAGGCTAGAAAAGCAGCAGACACCTCTCCCTATCACCCTGCTCTCTCTGTACGTTTCTCCTCCTAGCATTCTGCCTCTCTTCCCACAGACACACTAATATCCCTCTGTGTGGTTCCTTCCTTATTCCTTCCTCCCCGCCATGCAGGTATATACTTGTATTATTGCATTCCCAAATGATCTGTAACAAGGGATTTCATTCTAAGTGTAATgttttatctctgtgtgtgtattttaagATGTATTTTACATTGTGTtgctccccttacctcatcttaGCAACTGGAGCgattgtgcgtgtgcgtgtgtggggtAGGGCGAATAGGCATTAACACACACGTCATATGAACATACACTCACGGGTAATGCTTTGCGGTTGGTGTCTGTGTTATCCCGGCTTTGTTGTATCGGAGCTAGGAGCCTCAGTCTCCACACCATATTATCAGTTGAGCTCAAATCAATCATCATGCACTTAAAATGACATGGTGTGCTCCAGGACTGATTGAGTGAGGATGATTTTATTACGATTAACTATTGTTAAATATGCATTTCTTGTCCATTTGAAAACACAAGATCTAAAAAAGGACTGTAATGTCAAATATATGTATAGTTGCCTCTGTATTATGGAGAATCCTGTGTTAAGATGTACTTTGTATATACAATGTTGTACATTACAGAGGTACACTCTTTTTCTGGTACAATATTGTACAGTAATAGCAATAGTAGTTTAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1706432 lncRNA downstream 35325 78179365 ~ 78179674 (-) True G1492620
TU1706409 lncRNA downstream 80636 78134030 ~ 78134363 (-) True G1492599
TU1706408 lncRNA downstream 81312 78133393 ~ 78133687 (-) True G1492598
TU1706368 lncRNA downstream 83010 78125948 ~ 78131989 (-) True LOC110493261
TU1706369 lncRNA downstream 140850 78073214 ~ 78074149 (-) True G1492559
TU1706452 lncRNA upstream 30264 78249307 ~ 78249572 (-) True G1492638
TU1706453 lncRNA upstream 31190 78250233 ~ 78250517 (-) True G1492639
TU1706457 lncRNA upstream 39387 78258430 ~ 78258700 (-) True G1492643
TU1706465 lncRNA upstream 74418 78293461 ~ 78293956 (-) True G1492650
TU1706467 lncRNA upstream 82767 78301810 ~ 78302778 (-) True G1492652
XM_036950724.1 mRNA downstream 613 78190099 ~ 78214386 (-) True ikbke
XM_036950723.1 mRNA downstream 640 78190099 ~ 78214359 (-) False ikbke
XM_036950725.1 mRNA downstream 1101 78190099 ~ 78213898 (-) False ikbke
XM_036950718.1 mRNA downstream 28730 78135094 ~ 78186269 (-) False LOC110494619
XM_036950719.1 mRNA downstream 28730 78135094 ~ 78186269 (-) False LOC110494619
LOC110494623 mRNA upstream 208656 78427699 ~ 78432573 (-) True LOC110494623
XM_036948232.1 mRNA upstream 265346 78484389 ~ 78508098 (-) True LOC110494625
XM_021569867.2 mRNA upstream 423872 78642915 ~ 78651843 (-) True LOC110494630
XR_005036719.1 mRNA upstream 522159 78741202 ~ 78836394 (-) False LOC110493264
XM_021569887.2 mRNA upstream 1073403 79292446 ~ 79297728 (-) True LOC110494643
TU1706388 other downstream 126147 78087603 ~ 78088852 (-) True LOC110493260
TU1704739 other downstream 732610 77481941 ~ 77482389 (-) True G1491128
TU1703698 other downstream 1516903 76696796 ~ 76698096 (-) True G1490147
TU1702105 other downstream 2689403 75525182 ~ 75525596 (-) True G1488708
TU1701641 other downstream 2950776 75263720 ~ 75264223 (-) True G1488266
TU1706560 other upstream 253975 78473018 ~ 78475506 (-) True G1492729
TU1706741 other upstream 551697 78770740 ~ 78771954 (-) True G1492897
TU1706762 other upstream 559309 78778352 ~ 78781395 (-) True G1492910
TU1706752 other upstream 584817 78803860 ~ 78813955 (-) True G1492901
TU1706748 other upstream 588096 78807139 ~ 78815429 (-) True G1492898

Expression Profile