RNA id: TU1705814


Basic Information

Item Value
RNA id TU1705814
length 1473
lncRNA type sense_over
GC content 0.43
exon number 1
gene id odad1
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78396236 ~ 78412856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAAGACAAATAACGTTGGTGAAGGTAGCAATCATAGGTCTTTTCATTATTGGACTGGCAGTGGTTCCGGATTTTCTGGAAACCTGGTTTGCCGTTGCTAAAGATAGAGATTTCTGCGCATGTGAATGATTTTTAGCTGCTGGCCAGTGCCCATTCCACTGcctacgtagctgctgctcagtgCTCCGCTGCCACTTCCCTTTCCTTGATCAGTGATGATTATTGCATGTATTCATGGAACTGTGTATGACCAACACCACTGTTGCCACTGATAGCAGAGACTGAGGGGTCCCCGCTGGCACATCCATTGTCTCTGAAATATTGAGGTTCTGTACACTCTGTCACAATATAGAAGTTAACTTATATGTTCCTGATTCTCTATTGGATTTGCCTGGGATCCCTAGAAAGCCGTTCAGAGTGTATGGGACACCGCTGTTCAGAAGAATAGAGCCCAGTTAGCCCCCACCAATTCTTCCAATTATGGGGACCATTCCCCCTCCTAATCCTGATCTCTGCTCTTTGATGCCCCCACCCCTGCTCTCCCTTCAAGCACCGACATTCCATGGATCAGGTTACAGTCTTTTGTCTTCCTGTTATTCAGGTGTGATTGCGAGTAACTCTTCTTTGTGTTTATTCAGATTTTTGTGAAAATCTGAAGAAAGTTGTGGTGGAGGGGATCCTTGTTGGCCAACCACTCACTTTTGCCTCTCATTCTAAAACTAAAGATCAACTTCTTGAGCACAAAGACTATGTGCTCTCTGGTCCAGATGGTTATAAAGATTATCTGTGGCACTGCATCAGTTCATAAATAATGTTCCATTATAGCTTTCCAAGTTGAGTAGCAACTGTGAAGAAAATACCCTCACTGTGTCAGAGTATGAAATGGAATACTGCCCATGATTATGAGACCTTCTCCTGCAAACCTAAAATGATGACAGCTCTCACAACAGTAAACAGCATACAGAtgttgctctcactctctcttcagtCTCTGCTTGAACTCAGTCTTTTTAAGTGAACCTCTACCTCTTGTAACCTACAGGGACCAGCAGGAGGACATTTCTGGAAGAGGTCCAGTATCTATGGAAACAAGTTGAGGTGGTCTGCAtacaaaagagagaaaaaaatgacaGGAAATGATATCACAAACACTCCCCCTCTCTGATTGCAGGGACTGACTGCTTTTATTAGGCAGTTAGACTGCTTCTTTTCTGAATCCAGACTACTCCTGTGAAGAGACACTAACACACActttctaaaacacacacacgttattcttagtaatgtaatgtagtattaTAATATTGTAATGTAATGAGGGAGCAATGTAGATGTGTATAATGCACACTGTTTTGTTTAATGTAATGTTTTTATCTCtgaacccccaggaagagtagctgctgccttggcaacagctaatggggattctaATAAACTACTAAATACACACAGAGTGGGATGGTTAGATTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1705832 lncRNA upstream 23950 78386899 ~ 78387434 (+) False G1492083
TU1705831 lncRNA upstream 23950 78386981 ~ 78387434 (+) True G1492083
TU1705828 lncRNA upstream 28339 78382816 ~ 78383045 (+) True G1492080
TU1705750 lncRNA upstream 150054 78261121 ~ 78261330 (+) True G1492009
TU1705745 lncRNA upstream 153096 78258033 ~ 78258288 (+) True G1492007
TU1705850 lncRNA downstream 21194 78434050 ~ 78434317 (+) True G1492099
TU1705857 lncRNA downstream 27922 78440778 ~ 78440987 (+) True G1492106
TU1705878 lncRNA downstream 67924 78480780 ~ 78483600 (+) True G1492125
TU1705986 lncRNA downstream 211862 78624718 ~ 78630403 (+) True G1492219
TU1706008 lncRNA downstream 240253 78653109 ~ 78653334 (+) True G1492239
XM_021569848.2 mRNA upstream 8220 78396236 ~ 78403164 (+) False odad1
XM_021569850.2 mRNA upstream 8220 78396236 ~ 78403164 (+) False odad1
XM_021569847.2 mRNA upstream 15655 78390905 ~ 78395729 (+) True LOC110494621
XM_021569840.2 mRNA upstream 325389 78084722 ~ 78085995 (+) False si:ch73-303b9.1
XM_021569842.2 mRNA upstream 325389 78084910 ~ 78085995 (+) True si:ch73-303b9.1
XM_021569855.2 mRNA downstream 10131 78422987 ~ 78425996 (+) False LOC110494624
XM_021569857.2 mRNA downstream 10191 78423047 ~ 78425996 (+) True LOC110494624
XM_021569859.2 mRNA downstream 129595 78542451 ~ 78553518 (+) True LOC110494627
XM_021569860.2 mRNA downstream 141747 78554603 ~ 78576168 (+) False LOC110494628
XM_021569861.2 mRNA downstream 142881 78555737 ~ 78576168 (+) True LOC110494628
TU1705741 other upstream 158076 78252629 ~ 78253308 (+) True G1492003
TU1705667 other upstream 221094 78189012 ~ 78190290 (+) False G1491963
TU1705669 other upstream 221094 78189012 ~ 78190290 (+) False G1491963
TU1705568 other upstream 391568 78018368 ~ 78019816 (+) True G1491899
TU1705554 other upstream 402585 78008290 ~ 78008799 (+) True G1491886
TU1706084 other downstream 357891 78770747 ~ 78773759 (+) False G1492310
TU1706085 other downstream 360373 78773229 ~ 78775727 (+) True G1492310
TU1707053 other downstream 916763 79329619 ~ 79336072 (+) True LOC110493267
TU1707042 other downstream 969789 79382645 ~ 79385437 (+) False tusc2
TU1707040 other downstream 970939 79383795 ~ 79385437 (+) False tusc2

Expression Profile