RNA id: XM_036948232.1


Basic Information

Item Value
RNA id XM_036948232.1
length 3788
RNA type mRNA
GC content 0.48
exon number 24
gene id LOC110494625
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78484389 ~ 78508098 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcactcactctctcactctctcactctgtctctctctctctctcacacacacacactccctgagcTGCGAACTGGACCAGATAGTATCTCTCCAGTATCCAGTTCCACAGCCTCATTTCTCCACACACCAGCTCTGGGTGACAGCTCAGTAGGGGTGTCTGGGAAATACAGCCTGCTGTAAGGGACGTCTCAGGGAGTTCTACTGACCAGATACAGGTCACTTGAGCGACTGGCGTTGCACTGCATCAGTTTACACAGCCCACTCACACGCAGGGACGCACCGCACGCTCTCTGGCTGTACCCCGTTCCTGTCACTCTCCACACTACTTTTCCAGAGAGCCCGGAGAGCTGAGAATGGGCAAATCCGAAAGCCAAAtggacatcatggaaaaatctacCAAACCAGGGAAGCGTCGTTGGACTGTTGCAGAGATTGGGCTGTCTGTGCTGTTGTTGCTGGTCAGCTGTGCCCTAGCTGGACTGATAGTCCTCTACACATCGGCTCTGAGAGAGCGGTCCAATAGACCTGGTGTGTCAAGGAGCTCAGTCACTGAGGGGCAGAAGTATCGTTCTGGCCCCAGCAATGTTTGCACAACTCCTGAGTGCGTCACATCAGCCGCTCGTCTCTTGCAGAACATGGATGCGACGGTGGAGCCGTGTCAGAACTTCTACCAATATGCTTGTGGGGGCTGGCTGGAGCGTCATGTCATCCCAGAGACCAGCTCCCGTCACAGTGTCTTCGACATCCTCAGAGACAGGCTGGAGATTGTGCTCAAAGGAGTTTTTGAGACTGAGAGTGATCAGGACCGTGACGCCTTCAAGAAGGCCAAAACTCTCTACAGCTCCTGCATGAATGAGACTCTGATAGAGCAGCGCGACTCCCAGCCACTCATGCTTCTCATTGACAGCATAGGAGACTGGCCGGCTGCCTCAGAGGACTGGAACAGCACTACTGAGGAGGCCTGGAGCCTGGAGGACACTCTAGCCACCCTCATCTCTCGTTACCACAAGAAGGTCCTGCTGGATATGTATGTGTGGACTGATGACCGCGACTCCCGGCGCCACATCATCTACATTGACCAGCCAGGACTAGGAATGCCATCCAGAGAGTATTACTTCAATGATGGAAACTACAAAAGGGTTCGAGAGGCCTACCTGCAGTTCATGGTTTCCATGGTGAGGATTGCCCGGGAAGACAGGAACTTGACCCAGGAAGATGATCGTGTGGTCGAGGAGATGGTGCAAGTGCTGGAGCTGGAAACAGATATTGCAAATGCCACATCCCCTGCTGAGGAGCGGCAGGATGTCACGATTCTCTACAAAAAGATGACCCTGACTGAGCTGCAGGAGTCCTTCAATCTCAACGGTTTTAACTGGACAAGGTTTGTGCGTGGTGTGTTGTCCAGCGTGGCTGTGAAGGTACAGCtggaagaggaggtggtggtctaTAGCTCCCCTTACCTGGATAAGATGAACAAAGTGCTCTCCAAACACACTGTCAGAACCATGCAGAACTACCTCACCTGGCAGGTTGTCATGGAGAGAGTCAGCAGCCTTAGTCGACGCTTCAAAGATGCCAGGGCACACTATAGAAAGGCCCTGTATGGGACGACAGTAGAGGAGGCGCGGTGGAGAGACTGTGTGCGTTACGTCCAGGGCAGCATGGAGAACGCAGTGGGGGCTCTGTATGTGCGAGAGACCTTTGCTGGCGAGAGTAAACGCATGGTTAGTGACCTCATCAGTAAGATCCAGGAAGCGTACGTGGAGACGCTAGAGGAGTTGAGCTGGATGGATGACCAGTCTaaggaaaaagcaagagagaaGGCCATGGCCATTAAGGAGCATATTGGCTATCCTGACCACATTCTGGAAGAGAGCAATCTGAAGCTTGACCAGGAGTATGCCCATTTGAACTTTAGCGAGGAGAACTACTTTGAGAACATCCTTGAGAACCTGCAGGCTGAAGCACACAAGAGTTTGAAGAAGCTGAGAGAGCCGGTCAACCCAGACATGTGGATCATTGGTGCTGCTGTGGTCAATGCTTTCTACTCACCAAACAGAAACCAGATAGTATTCCCTGCAGGTATCCTGCAGCCTCCTTTCTTCAGTAAGCAGCAGCTCCAGGCCCTGAACTTTGGAGGAATAGGAATGGTCATTGGACATGAGATCACCCATGGGTTTGATGACAATGGCCGTAATTTTGATAAGGATGGTAACATGCTTAACTGGTGGAGTAATTATTCTGCTGAGCACTTCAAGGACCAATCACAATGCATGGTGCAACAATATGGCAACTTCAACTGGAAACTCGCAGGCGGACAAAATGTCAGTGGAATTAGCACTTTGGGGGAGAACATCGCTGACAACGGAGGAGTTCGGCAAGCCTATAAGGCCTACATgaagtggatggagagagaaggtgaAGAGCATCGTTTACCTGGTCTGGACATGGACCACAAACAACTTTTCTTTCTTAACTTTGCACAAGTATGGTGTGGTGCCTATCGGCCTGAATATGCCAGCCAGTCCATCAAAACGGACTCCCACAGTCCCCTAGAATACAGGGTGCTCGGCTCCCTACAGAATTTTGGAGCATTCTCAGACGCATTCCAGTGCAAACCGGGTACTCCCATGAACCCTGAGATAAAATGTCGGGTGTGGTAGCCAGTTTCTGCCTTCTTCTACTCTTGTTAATTATTTCTTGACTCGGGCAACTGAACAAAAGAACATGCTTAACCTTCACAGAGGCATCCTGCCTTAGAGTATGTCTGATAGATTTACATGGCAGAAGATAATAGATATTTACACAAGTGTTTTAACAGTGTGTAAATGCAGAATACAGTTTATATATGGACTGGATAACTGACCAAACTACACCCTAGTATCACCATTTGAAGCAGATTAAAACTACGATTAGACAGCAAAAACACTTGCAAGGAGTGTGTGCTTATATGGCTACTCAGCTTGAAGATGTTGTCTGTGGGTGAACAGTTTTACTTGTGGTTTTGTTGTATACACTCTCAGGAAAAAAGATTCTGGGTAGAACCAAAAAAGGTTTCTATAATTGCTTAATTTATGGCACCCCTAAAGGTTCTATATAGAGCCAGTTCAGTTCTTCACTGAACCTAAATTTGATCCATATAGGGTTCTAAATTTTAGTTCAGTGAATAAGAATAAGGGTGCCATATATGAAGCAAGCAGAGAACCCTTATTGGTTCTATCCAGAACCTTTTTCTCTAAGAGTGTACTTGTATCAATCTGAAGCTCCACTGTGGGTGGTCAGTTGATACATGAATAGTCGGGGAAATGTAGGAAATTCCTAAGATTTTGTAGAATAGGTTTCAGCCGAGCTGGCTTTAAATGCTTTAACTGACTTTTTGAAGAATTTCCTAAacaactctttctgctttttgtcAAGTCATGCGGGTGGCAAATCCACAGCGCTTTGAAGCCCACATATTTAGTGGCTTAAATCTATGTGCGCCGAGTATCTTCAGGCACCGTGTTGCCTTGTACGATCCTGTCTGATATgaaacatttgtttttcaagaCATTTTTCCACGAAGCAAGAGGTAAAGTGAATAataacacactggttgaatctaCGTTTTTCCCACGATGAAATTACgtggaaccaacgtggaatagacgttgaattgatgtctgtgcccagtgggaagtttCTACGAAATGAATAAAGGCTCTGTGAGAAAATGTAGAGCAGCAGTGAACTAGAGCTGGCTTGGCTACGTCACTCTTTGAAATAAAGCAATTTACCTGAAGACAGA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K08635 MMEL1, NEP; neprilysin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1706567 lncRNA downstream 780 78480785 ~ 78483609 (-) True G1492734
TU1706569 lncRNA downstream 2862 78478830 ~ 78481527 (-) True G1492735
TU1706565 lncRNA downstream 5664 78477578 ~ 78478725 (-) False G1492733
TU1706561 lncRNA downstream 8435 78473357 ~ 78475954 (-) True G1492730
TU1706544 lncRNA downstream 42269 78441813 ~ 78442120 (-) True G1492713
TU1706581 lncRNA upstream 4605 78512703 ~ 78512906 (-) True G1492747
TU1706663 lncRNA upstream 130406 78638504 ~ 78640770 (-) True G1492825
TU1706630 lncRNA upstream 160600 78668698 ~ 78671759 (-) True G1492795
TU1706631 lncRNA upstream 163815 78671913 ~ 78672168 (-) True G1492796
TU1706632 lncRNA upstream 164767 78672865 ~ 78673520 (-) True G1492797
LOC110494623 mRNA downstream 51816 78427699 ~ 78432573 (-) True LOC110494623
XM_036950726.1 mRNA downstream 94540 78217831 ~ 78389849 (-) False LOC110494620
XM_036950727.1 mRNA downstream 94540 78217831 ~ 78389849 (-) False LOC110494620
XM_036950728.1 mRNA downstream 94540 78217831 ~ 78389849 (-) False LOC110494620
XM_036950729.1 mRNA downstream 128021 78217831 ~ 78356368 (-) False LOC110494620
XM_021569867.2 mRNA upstream 134817 78642915 ~ 78651843 (-) True LOC110494630
XR_005036719.1 mRNA upstream 233104 78741202 ~ 78836394 (-) False LOC110493264
XM_021569887.2 mRNA upstream 784348 79292446 ~ 79297728 (-) True LOC110494643
XM_021569900.2 mRNA upstream 807102 79315200 ~ 79319147 (-) False LOC110494645
XM_036948234.1 mRNA upstream 807102 79315200 ~ 79319780 (-) False LOC110494645
TU1706560 other downstream 8883 78473018 ~ 78475506 (-) True G1492729
TU1706362 other downstream 265346 78214999 ~ 78219043 (-) True LOC110494620
TU1706388 other downstream 395537 78087603 ~ 78088852 (-) True LOC110493260
TU1704739 other downstream 1002000 77481941 ~ 77482389 (-) True G1491128
TU1703698 other downstream 1786293 76696796 ~ 76698096 (-) True G1490147
TU1706741 other upstream 262642 78770740 ~ 78771954 (-) True G1492897
TU1706762 other upstream 270254 78778352 ~ 78781395 (-) True G1492910
TU1706752 other upstream 295762 78803860 ~ 78813955 (-) True G1492901
TU1706748 other upstream 299041 78807139 ~ 78815429 (-) True G1492898
TU1707296 other upstream 840133 79348231 ~ 79349389 (-) True G1493395

Expression Profile