RNA id: XM_021569859.2


Basic Information

Item Value
RNA id XM_021569859.2
length 1802
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110494627
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78542451 ~ 78553518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGAACAAAACCTCCACTGCATCTATTTGAGCACCTTGATCAGAGAGAGATTCAATCAGGCATGGTAAAACAACACGTTTCGGCTTGTTTCTTTTGAAAAACGACATTTTTTACAACTAGCATCTCAGTAGTTTGAAATGGATTATCAACGCCGTATTACCTCATATCCTTTGAGAATACTTTGCTTTTTTAATCTGgtttgttctgtgttgttgtctagCTGTCCTCGTACCTGTGACTCAGGCTTCATCATTAACAAGTGTAAGTGTGTCCCTTGTCCCAATGGTTACTACTGGTACAAGCTTAATGGCCGTCCTAAGTGTGACTTCTGTACTAAAGCCTGCTCAGTTGATCGGCACTTGACACAGGTGAAGGAATGCCGCCGGGACTCAAACCGGGAGTGCCACTGTGTCAGGGGCTTTTTCTGTGCCAGCACTGCCCAGTATACCTGCAGGAGGTGTAAACCGTGCGTGTCTGGCACCTTCTCCAACACAGCAAACCTAGCCACGTCCTGCAAACCCCACACAGTTTGTGGCCATAAGGGAATGACCATGGTAACAGAGGGCACTGCCTCTCAGGATCGTGTGTGTGCCCAGACTTCCCCCACCTCTCCTACAACTACTGCACTTCCACCTGCTCAAAGCTCAAAGATGTCCCTTCGTTCTGCTATATCCAGTGGTGTCGGCACCAACAGAGAACTCCTCATCGCGAGATCCGCATCTCGACTGGTTTGGTCTCCTGAGAACGTTCTCATCAGGTCCTCTCTGTCCCAAGCCAGGAGAgacccctccatctccctcgcaACCAAGCTCACCACCAGGAGAAAGCCATGCAAGGTGGACAGTGACACCTCACCTGCAGAGTCTGCCTCTGCACCCCCTCTTACCACAAAAGACAATGACTCACCTCATCTCCCAGTCCCAGCCTCTGGACAGAGCCCTCCCAGTCTCCCTTTGCTGCTGCTGATAGTTGGGCTCTTAGGGGTCACTCTGCTGCTGATTGGTTACTTTGTGGGGTGTAGGGGGAGGTCACTGGAGTCCATGCACAAGTGGAAAGGTCCAATATTTCGGAAATATATTTGTAAGGAAAGTCTGAGAGGGAGCTATAAAGCGTGGGAGTGCCAGCCTTGTCCTGCTGCCCTACAGACGGCTTCCTATAAGCAGGCCAAGCTGCCACAGGAGAGAATCCCACACCTGGAGGCCCAGCATCTTCTGgggagggagactgggggagaTCCTAGACAGGAGGGTACAGGGTCACAACTTCCAGGGGGCATGCAGAATGTCTCAGTAGATCCCTCTGGAGGAGAAAACATTAGCAACATAGTAGGGTCCATATACATCTACTCTCCAGGGACGGTTGTCCTGGGATCCAACAAATCAGACAGGGAGGGGGATCaaggggagagtggaggagagggctgTCCCCTCACCAGCAAGCCCCAGCAGGAGTCCTCCTACCCACTCCCTTGGGGCTCCGCTCTGGGGCCAGAGGGAATGAGTACGCCGAAGGATACCTGCAAAGAGCTGAGCTACCCCGTGCCAGCCACCAGCAATTGAAAACTATGAAAAAAATGGTGAGggggtgtgagggggggggggcaggttcaGTCAATATCATACCATCTCTGGGAGAGGGAGACTGAATATTATTTGCTACTGTAAAGACAGACTGAATATTATTTGCTACTGTAAAGACAGACTGAATATTATTTGCTACTGTAAAGACAGACTGAATTGCAAAATACACTGGGGTCTATGGGCCTTCTATTATTAAAGAGTGACAACTTGTTTGAACTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1705878 lncRNA upstream 58851 78480780 ~ 78483600 (+) True G1492125
TU1705857 lncRNA upstream 101464 78440778 ~ 78440987 (+) True G1492106
TU1705850 lncRNA upstream 108134 78434050 ~ 78434317 (+) True G1492099
TU1705814 lncRNA upstream 129595 78411384 ~ 78412856 (+) True odad1
TU1705832 lncRNA upstream 155017 78386899 ~ 78387434 (+) False G1492083
TU1705986 lncRNA downstream 71200 78624718 ~ 78630403 (+) True G1492219
TU1706008 lncRNA downstream 99591 78653109 ~ 78653334 (+) True G1492239
TU1705953 lncRNA downstream 119359 78672877 ~ 78673046 (+) True G1492193
TU1705954 lncRNA downstream 119640 78673158 ~ 78673551 (+) True G1492194
TU1706019 lncRNA downstream 129538 78683056 ~ 78683313 (+) True G1492249
XM_021569855.2 mRNA upstream 116455 78422987 ~ 78425996 (+) False LOC110494624
XM_021569857.2 mRNA upstream 116455 78423047 ~ 78425996 (+) True LOC110494624
XR_002469296.2 mRNA upstream 129618 78396236 ~ 78412833 (+) False odad1
XM_021569848.2 mRNA upstream 139287 78396236 ~ 78403164 (+) False odad1
XM_021569850.2 mRNA upstream 139287 78396236 ~ 78403164 (+) False odad1
XM_021569860.2 mRNA downstream 1085 78554603 ~ 78576168 (+) False LOC110494628
XM_021569861.2 mRNA downstream 2219 78555737 ~ 78576168 (+) True LOC110494628
XM_036948245.1 mRNA downstream 43622 78597140 ~ 78640882 (+) False LOC110494629
XM_036948246.1 mRNA downstream 43622 78597140 ~ 78640882 (+) False LOC110494629
XM_036948248.1 mRNA downstream 43622 78597140 ~ 78640882 (+) False LOC110494629
TU1705741 other upstream 289143 78252629 ~ 78253308 (+) True G1492003
TU1705667 other upstream 352161 78189012 ~ 78190290 (+) False G1491963
TU1705669 other upstream 352161 78189012 ~ 78190290 (+) False G1491963
TU1705568 other upstream 522635 78018368 ~ 78019816 (+) True G1491899
TU1705554 other upstream 533652 78008290 ~ 78008799 (+) True G1491886
TU1706084 other downstream 217229 78770747 ~ 78773759 (+) False G1492310
TU1706085 other downstream 219711 78773229 ~ 78775727 (+) True G1492310
TU1707053 other downstream 776101 79329619 ~ 79336072 (+) True LOC110493267
TU1707042 other downstream 829127 79382645 ~ 79385437 (+) False tusc2
TU1707040 other downstream 830277 79383795 ~ 79385437 (+) False tusc2

Expression Profile