RNA id: XM_021569860.2


Basic Information

Item Value
RNA id XM_021569860.2
length 1958
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110494628
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78554603 ~ 78576168 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatatatttgagattttgtttatgaattattaagtgtTTAGAAATCGTAATTCCGTTACTAAATGGATAACTGCTGGAAGTAGAAAGACGCCCTCTGTTTCCTCAAACACTCAGCATTTCAAGGAAACTCATTTATCTTGCCGTCGGGGCGGTAATTCGAGCATTCTTCTGTAGGCTAGGCAATCTGCGGTTTCAGTATTATATGGACTTTTCTCAAGATCTTAAAGGGGCAATAATAATTGTATCAATCATGATACTAAGCACTGTAAGTGGCATCCTTACAGTAAGGATACTTCTCGCGATCATGGTTCAGCGTGTTGAGAACACGGTGTACACTCTGCCATACACACCAGACTCTGCTGAAACCTGTCGCAACAAAACAGCTGAATACTATAACACACTGATAAACCTGTGCTGCAGCAAGTGTGCTCCCGGGACACGCCTTAAGAATGAATGCAGCACTACCTCAGACACAGTGTGTGAACCATGTCCCAGTGGCCAATACAGTGGGACCTTCAATTACTTCACAAAATGCTTCAGATGTCCCAAGTGTTCAGAAGACAAAGGCCTGCAGTATGCCCAGGATTGCTCTAGCACCACCAAAACCCAGTGTATGTGCCAGACTGGGAAGTTCTGCATAATGGAACAACACCCAAACTGTAAGGAGTGTGGCAGTTATACACACTGCCAGCCTGGCCATGGTGTTGCCATAGAAGGGACAACAGATTCAGATGTGAACTGTGCACCATGCCCTAATGGAACCTTCTCTGACCAGCACTCCTACACCCAGACCTGCCAGCACCACACAGACTGTGTGTCGCAGAGAAGGGGTGTACTGACTTATGGTAACACCACATCAAATGCTGTGTGTGGACCTAAGGTTAGACCACCGACCCGCCCACCGACCACAATTCCGACCTCTGGTACAGGGCATACCACGCCAAGTCTACAGAACCTGCATATAGGGGGCAAATCACCAGGTTTTGACCTTCGTATAGTTTCAGGTGTTATCGGAGGTGTTATCGGAGGTGTTATCCTGCTGCTGATCATAGGCACAGTCATTTACAAGAAAGCTTTCATAGGGTCCAGGCTTGTATCTTCTATAGAAGATAGAAATGGAAATTGGGAGGCCATTAAAtTTGATAGTGACGGACCAATGGTTCTTCAGAACAGTTCATTCATTACTAGCTATCGGGAACAGCAGCAATGTTTGATGGGAAAGGGAAACTGCAGCAATCCCAGTCAGGCAGAGAACCAGCAAGATACTAGAAGGACCTGGGTGTCAGAGTGCTCCAACAGCCTGGAGGGCCTGTCAATAGGCCCCCTTCAGTCCACTCCTCCACAGTCCAGCACCCAGCCCAGCCCTCAACCCACCAGCCCCCAGCCTACCAGTCCCTTGCCATCTAGTCCCCTAGTTAATGTCAACATCACTGTTAACTACCCTGTGACCTTAGGAAATGGGTCATGCGCCACACCTACCAGCACCCACATAGACTCATCCCAGGCTGACCCTGAGCTCCCTCTATCAAGGGAGGAGGAGGTGCATGTCAACATGCCACAGCAAGAGGGCGGAAAAGAGGCACTTACGGCAATACAGGAGAGTGGAAATTATGTTTGAGGACTGGCAGCAGATAGGACAGCACCAGACAATAGATTATGttttaattatattttttcaCACTGGTTGTTGTCTCTGTTTTTATATGATTGCTACTACTGTTGCTGACTGAATTGGTGGAGAGAGACTGCACAGAATGACTGTTCATGTGTCTTAGGCATGGACTTGTCATAATGTGCTGTGCTGGAAAGCCTTGAGCACCTGAATAGAATGTCAATGACTGTTCAAAGAATGATTGATATGTGAGTAATGTATGTAATTACTGTGAATGTTGTAAATAtacactgaaaaaatatataaacacaacatgcaacaaattaaaaggttttactgagttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1705878 lncRNA upstream 71003 78480780 ~ 78483600 (+) True G1492125
TU1705857 lncRNA upstream 113616 78440778 ~ 78440987 (+) True G1492106
TU1705850 lncRNA upstream 120286 78434050 ~ 78434317 (+) True G1492099
TU1705814 lncRNA upstream 141747 78411384 ~ 78412856 (+) True odad1
TU1705831 lncRNA upstream 167169 78386981 ~ 78387434 (+) True G1492083
TU1705986 lncRNA downstream 48550 78624718 ~ 78630403 (+) True G1492219
TU1706008 lncRNA downstream 76941 78653109 ~ 78653334 (+) True G1492239
TU1705953 lncRNA downstream 96709 78672877 ~ 78673046 (+) True G1492193
TU1705954 lncRNA downstream 96990 78673158 ~ 78673551 (+) True G1492194
TU1706019 lncRNA downstream 106888 78683056 ~ 78683313 (+) True G1492249
XM_021569859.2 mRNA upstream 1085 78542451 ~ 78553518 (+) True LOC110494627
XM_021569855.2 mRNA upstream 128607 78422987 ~ 78425996 (+) False LOC110494624
XM_021569857.2 mRNA upstream 128607 78423047 ~ 78425996 (+) True LOC110494624
XR_002469296.2 mRNA upstream 141770 78396236 ~ 78412833 (+) False odad1
XM_021569848.2 mRNA upstream 151439 78396236 ~ 78403164 (+) False odad1
XM_036948245.1 mRNA downstream 20972 78597140 ~ 78640882 (+) False LOC110494629
XM_036948246.1 mRNA downstream 20972 78597140 ~ 78640882 (+) False LOC110494629
XM_036948248.1 mRNA downstream 20972 78597140 ~ 78640882 (+) False LOC110494629
XM_036948243.1 mRNA downstream 20975 78597143 ~ 78640882 (+) False LOC110494629
XM_036948244.1 mRNA downstream 20975 78597143 ~ 78640882 (+) False LOC110494629
TU1705741 other upstream 301295 78252629 ~ 78253308 (+) True G1492003
TU1705667 other upstream 364313 78189012 ~ 78190290 (+) False G1491963
TU1705669 other upstream 364313 78189012 ~ 78190290 (+) False G1491963
TU1705568 other upstream 534787 78018368 ~ 78019816 (+) True G1491899
TU1705554 other upstream 545804 78008290 ~ 78008799 (+) True G1491886
TU1706084 other downstream 194579 78770747 ~ 78773759 (+) False G1492310
TU1706085 other downstream 197061 78773229 ~ 78775727 (+) True G1492310
TU1707053 other downstream 753451 79329619 ~ 79336072 (+) True LOC110493267
TU1707042 other downstream 806477 79382645 ~ 79385437 (+) False tusc2
TU1707040 other downstream 807627 79383795 ~ 79385437 (+) False tusc2

Expression Profile