RNA id: XM_036948246.1


Basic Information

Item Value
RNA id XM_036948246.1
length 3787
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110494629
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78597140 ~ 78640882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAATGAACAGCTAAGGAAGAATCGTTCACTTCTCTCATTGCCTTCTCAAACCCAGCCTGGTCTGCTTGGTCTGTTTCGTAAGCCTTCCCGGAAGTCTTGCAATGTTGCGCCTCTgtgtttagaaactctgtgactTTACTGTCTTTGACGTTAGTGCTGCTGTGCTAGCGGAACTAATCTTTGTCTTTCAGCTGAGCGCGTCGAAGTTTGCGCCATTCCATTCGTTTACAGAGGTACAACATTTATCACCAGTAGCGTTTCCTCCGTCTGTGTACTTAAAGATCAAAGAATAGTGGCCAAGATTCTGAAGTGGGTGTCATTGAACTGACAGTCAAGAACCAAACCCTGATGTGATCTCTCAGTCCAGAACAGTGTATTGAAAAATATAACCAGGTGCATTCTGCTCCCAAGCAGTGTGCAGTCAGATGCATCTCAACCTCTATGTTTGCAAATGGCTTGCTGTCTGAAGGACGAGCTTTTGTGTTCCATTTGCCTGAGTATCTATCAGGACCCTGTCAGTTTTGGCTGTGAGCACTATTTCTGCCGTAAGTGTATAACTGAGCACTGGAGCAGGCAGGAGCCCCACGGTGCCCGAGACTGTCCTGAGTGTAGGAGGACCTTCGCAGACCCTCTTCTCTCCCCAAGCCTCAAGCTGTCCAACATCGTGGAGCGCTACTCAGCCTTCCCGCTGGACGCCATCCTCAACGCGCAGAGGAGCTCCTATCCGTGCAAGGACCATGAGAAGGTCAAGCTCTTCTGCCTCAGCGACAAGAGCCTGGTATGCTTCTTCTGTGATGAGCCAGCCTTACACGAGCAACACCAGGTCACCACTATTGACGAGGCCTACGAGGAGATACAGagggagatgaAGGAGCAGCTGGCCACTCTGCAGGACAGTGAGAAGGGACACACAGAGGCCCTGCGGCTACTGCAGAGACAACTCACTGAGACCAAGtCGTCGGCCAAGGGCCTTCGTGCGACCATCGGCGAGGTGTTTGAGCATCTGCAGCGATTTCTGCGCGAGCGCCAGAAGGCCATGTTGGAGGAGCTGGAGACTGATACAGCGCGCACGCTCTCCGACATCGAGCACAAGCTCCAGCGTTTCAGCCAGCAGCTGCGTGACGTCAAGGAGGGCATCGGCATCCTGCAGGAGCGCCTCAACGAGCCAGGCCGCCATGGATTCCTGGAGGGCGTTGCCCTCACCTCCGAGAGGTGCTCTGCTTACTGTCTGACTGACCATGGATCAGCTGTTCTTCCAAACAGCCACAGTCCTAAACTTTTGATAAAAGGAAAGATACATGAGACCAATTTAACATATGAAGATTTCCCGACCTCCAAGTACATGGGGCCCCTGCAGTACACAATATGGAAGTCTCTATTTCAGGATATTTCACCAGTGCCAGCAGCTTTGACCTTAGACCCCGTCACAGCCCACCAGAGACTCATCCTATCAGATGACTGCACCATTGTAGCCTATGGTAACCTGCACCCCCAGCCGCTGCAGGACTCCCTGCGACGCTTCGACGTGGAGGTGTCTGTGCTGGGGGCCGAGGGCTTCGGCTCCGGGGTGCACTACTGGGAGGTGATGGTGTCAGAGAAGACCCAGTGGATGATCGGCGTGGCCAACGAGACGGTCAGCCGCAAGGGCAGCATCCAGATCCAGCCCAGCCGTGGCTTCTACTGCATTGTCATGCACGACGGCAACCAGTACAGCGCCTGCACCGAGCCCTGGACCCGCCTCAACGTCAAGAGCAAGCTGGAGAAGGTGGGCGTGTACCTGGACTACCCCAAGGGTCTGCTGGTGTTCTACAATGCTGATGACATGTCCTGGCTGTACACCTACAGGGAGAAGACTTTCCCGGCCAAGCTCTGCCCCTACTTCAGCCCCGGGCAGAGCCACGCCAACGGCAAGAATGTCCAGCCGCTGAGAATCAACACCGTGCGTCTATAAGAGctacagacagtgtcactagaCAGATCAGATCACTCACCTCAACCCTAACCTGACAATAGGATGATGATGATATAACTACGATCCTAAAGACAACTAGTTTTAAAATGAAGGAATATGAGAAAAAGAACAGGGTGAATGACTATGGAATGTTTTTCTGTCTGGTTTGCGGGTGACAGGAAGTTTGTCTCCTCTTTTTGCCTGTCGGTGTGGGTCCTCACTATTCTCACCTGGGAAAGACTATTGGAACGCTGCTCCAGCAGCATCGCTCCAACTGAGCCCTGGTTAGCTTCTTCACTGGTGTAAGGAGAGACTGTCTGCATAATGTCATCCCACAATGGTTTAGTGGGGGATCTCTGTGTGCTGTTGCTGTCTGAGGACCACCTTGCACAAGCCCAAGGGCTCTGACACCCCTATGGTCCTTTTTCTTTGGCATAGCAGTTGTGAGTGAACGCCCGTCGTGGTGGCAGTGAGTGCTGTTCCATGTCCCTCCATGTACCTGTACCCTTTACTGATGAAAATGATGTCGCAGCTCTTGATTATTTTCCCTCGGGTCACACGTGCACTTTTCCATCGTTGACAATGTCAGTCAGTCCAAGACGTGCTGGAACGGCAGAATCATGTTCCGTGTGGTCTAGTGATCGTCACTGTAGTAGTGTTTGCTGTCCTCACCGCTCCCTCCTTTCCCCAGCGAGTCTGTTTGGTTTATTCACCTCCAGCACGCTAGTGCTCTACTCCAGCTGTACCTGTGGTTATTTATTCATTTAGTGTTAACACTCGTACATTCCTGATTCCatctccctgcctcctcccttcCATGACATCTCGTCATCGCATTGTAGGTGTCAGAGGTCAATATCAATAAATGAATCTTGACATCTGCTGATTTACACTTAGCCTATGGGGCAGAGACCACTTACGACTCGAGCAGCATGACGCTGCAATTAATGAGCTCTAGAATGTTTTTAATCAGTCATTCTGTCTCTttcatttttttcttcaaatATGTTGAAACTAGTAAATGCTATGGATACAATGGTTTTTAATATATTTATAGATTGTCTAAATAGTTTAATGACTTTAAGGATATACAAATGGCCAAGGAGAACAATATTACAGTACATTATTATACTGCCCTGGTCTGTTGGTATTCTTTTAACATCCATTTAGTTCTATAAGGCTGTTGCAGCGTAAACAGAATACACTGATATGTTTTGAGGCTCAGTTCATGTTGGCTCCTGCCCCATATGCCTCAAGTGCCCTGATTTAAGGCCAGTCCTGTAGATTGTTAAGGGACGAGCTTTTGTATTATACAAAGTCCAGCACGGAGAGAGCCAGGGGGGTGAGTGCGTGTGTTTGTCTGTATGTtagtaaatcaaatgtatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagtgtgtgtgcatgttggtgGAAAATGTATGTTCTGGCCTCGTCTGTGAGGTGATAAAATATCACATCTGTCCCCCCGCCTCGTGTGTTTGTTCACTTTGGGGCAGTTCACTACTTTGTTGGTATGTTCTGAAGAGTACAGTATGATGCAGAACCATATTTGAAGCAAGACTGCTGTCctgtgatatggacaccaagcaGGAGATGATTATTGTGGGTTGGTGGTGGGTAACTGGTGGGGGTCATAATAATGACCATTTATATGAACACTTTTTAATGAGGATTGTGTCTTTTGGATGATGGCCGCTGTGCACCCATTGTTGTGCAAACATACTCTGGTGTGCATCTGCTGCTAGAGGTCCATAACAAATGTTTTCATGTACAATTAAAGACAGGTAAAACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1705878 lncRNA upstream 113540 78480780 ~ 78483600 (+) True G1492125
TU1705857 lncRNA upstream 156153 78440778 ~ 78440987 (+) True G1492106
TU1705850 lncRNA upstream 162823 78434050 ~ 78434317 (+) True G1492099
TU1705814 lncRNA upstream 184284 78411384 ~ 78412856 (+) True odad1
TU1705831 lncRNA upstream 209706 78386981 ~ 78387434 (+) True G1492083
TU1706008 lncRNA downstream 12227 78653109 ~ 78653334 (+) True G1492239
TU1705953 lncRNA downstream 31995 78672877 ~ 78673046 (+) True G1492193
TU1705954 lncRNA downstream 32276 78673158 ~ 78673551 (+) True G1492194
TU1706019 lncRNA downstream 42174 78683056 ~ 78683313 (+) True G1492249
TU1706020 lncRNA downstream 42581 78683463 ~ 78683929 (+) True G1492250
XM_021569860.2 mRNA upstream 20972 78554603 ~ 78576168 (+) False LOC110494628
XM_021569861.2 mRNA upstream 20972 78555737 ~ 78576168 (+) True LOC110494628
XM_021569859.2 mRNA upstream 43622 78542451 ~ 78553518 (+) True LOC110494627
XM_021569855.2 mRNA upstream 171144 78422987 ~ 78425996 (+) False LOC110494624
XM_021569868.2 mRNA downstream 12709 78653591 ~ 78669747 (+) False LOC110494631
XM_036948251.1 mRNA downstream 13325 78654207 ~ 78669747 (+) True LOC110494631
XM_021569873.2 mRNA downstream 33495 78674377 ~ 78681299 (+) False LOC110494632
XM_021569870.2 mRNA downstream 33496 78674378 ~ 78681299 (+) False LOC110494632
XM_021569871.2 mRNA downstream 33496 78674378 ~ 78681299 (+) False LOC110494632
TU1705741 other upstream 343832 78252629 ~ 78253308 (+) True G1492003
TU1705667 other upstream 406850 78189012 ~ 78190290 (+) False G1491963
TU1705669 other upstream 406850 78189012 ~ 78190290 (+) False G1491963
TU1705568 other upstream 577324 78018368 ~ 78019816 (+) True G1491899
TU1705554 other upstream 588341 78008290 ~ 78008799 (+) True G1491886
TU1706084 other downstream 129865 78770747 ~ 78773759 (+) False G1492310
TU1706085 other downstream 132347 78773229 ~ 78775727 (+) True G1492310
TU1707053 other downstream 688737 79329619 ~ 79336072 (+) True LOC110493267
TU1707042 other downstream 741763 79382645 ~ 79385437 (+) False tusc2
TU1707040 other downstream 742913 79383795 ~ 79385437 (+) False tusc2

Expression Profile