RNA id: XR_005036719.1


Basic Information

Item Value
RNA id XR_005036719.1
length 3175
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110493264
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78741202 ~ 78836394 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCTATAAAGGCCGAGGGAAAGTTGTGCAATACATCTGGCTTGCCCGCCCGCCCCTCTGCCTTCTACCACGAGCTGGCCCGCCCTTCTGCCTTCTACCACGAGCTGGCTTGCCCGCCCGCCCACCCCTCTGCCTTCTACCACGAGCTGGCTTGCCCGCCCACCCGCCCGCCCCTCTGCCTTCTACCACGAGCTGGCttgcctgcccgcccgcccgcccctcTGCCTTCTACCACGAGCTGGCTTGCCCGCCCGCCTCCCGCCCGCCCCTCTGCCTTCTACCACGAGCTGGCTTGCCCGCCCGCCCGCCTCTCTGCCTTCGCCCACGAGCTGGCCCGCCCGCCCCTCTGCCTTCGCCCACGAGCTGGCCCGCCCGCCCGCATTTCTGCCTTCTCCCTCAAGCTGGCCCGCCCGCCCCTCTGCCTTCGCCCACGAGCTGGCCCGCCCGCAACTCTGCCTTCGCCCACGAGCTGGCCCGCCCGCCCCTCTGCCTTCGCCCACGAGCTGGCCCGCCCGCCCCTCTGCCTTCGCCCACGAGCTGGCCCGCCCGCCCGCCTTTCTGCCTTCTCCCTCAAGCTGGCCCGCCCGCCCCTCTGCCTTCGCACACGAGCTGGCCCTGGCATTGCAGAACCCTGGACCCTCACTGTAGATGGGAAGCTGTCTGACGAGTTTTCCCTTCCATTCCATGTAGAGGAAGTCAAAAGGTAGATGACAGCTTTTGCTGAGCAGGATGGTGCTGATCACCTCAGGTCCCCCTGGAGTCTTGCACCATCCGCTTCCTGGATAACTTCAGCCGTGGCCAGCACGGAGCCTCTTCGGCAGAGTACTTACTAGAGTCCGGCTACGCTGTGATCTTCCTGCACAGACACCGCTCCTTATATCCCTTCACTCTGGGATTAATCTGCTGGACAATAGAGGGTTCTGGCTGTGGCCAAGTCATGGTCAACCAGCAGGCACTTCCCAACATTGGCAAAGTCCTGATGCGTTACCAGGCGGTAAAAGAGGCACGGCTTCTTCTGCCTGTGGAGTTCAGCACCCTGTCTGAGTACCTGCACCACCTCAAAGCTGCAGCACAGGCACTCAGGCCCATAGGGTCTACGGCCATGTTTTATTTGGCTGCAGCAGTGTCAGATTTTTACATTCCAGCATCAGAAATGCCAGAGCACAAAATCCAGTCCTCCAATGGACCACTTCAGATCAGTATGAAGATGGTCCCCAAGATGTTGTCGCCGCTGGTGGACTGGGCTCCACAGGCATTTGCTTCAAGCTGGAGATGGACCCGTCCATCCTGCTGGACAGAGCTCGGCGGGCACTGGACAACAGGCTGTGGTGGCCAGCGTACTGGACACCAGACGAGGTTATGTAGTGGTGGTGACCCCTTACACTCAGGCCAAGCTAGTACTTACGGATGAGGAAGCAAGCAGAGATGTGGAGATCGAGGACAGTATTGTCAGTAACCTGACCAGAGCTCACAGCCAAATCATAACCCAACAAGACTGAGACCCCAGAGGTGTTTTCATTAGTTGCAATGGAAACTTCACTCCAAACAGAAAACGTTATGCAACAAAAACAGGTTACAACTGGACAAATTCATGGACGTCCCTCCCTGTTTGATATGTTTGCTTCCTAGAGTAAGATCGCTTCTCACAGAATCTGACTAATGAATACACTCCAGTAAACTGTGCTGCTTACTGGGAGGGCTGGCTTTGGTGGTCCGATGAAACACAGTAACGTGTCGTACAAGTCCCTGGGGCAGGGCACTAGCTCTACTTTCTTCTGAAATCTTAATTCATGCTTGTCTAGTTTGGATCTTCATTTTATCTTGCAGGGCTTTCACCGTCCTAGATCAGACATTCATGTGCATGCATATGTAGGTTTCAGTACACACTCTGCCTTTAAAATCTAATATTTACATAATCACAGCAAAACAATCCTTGATCACCTTAACTTTAAGTATCATACTCATGTCACAAGGCAGATTACAACATATTGGTTGTGGAATGATAATGCCAACCAATGAATTGACTTAACCTCATAGCAGTTTGTCAGAGTAATATCACAGACAGAGTACATCAGTAAAGTAACAGACTCGGAACATTAAACTTTAACTGTATGTTGATATTTTATGTGCTGGACAAATCACAAATCTACTCCACAGAGGGAACAGTCTTCCTTGAAGGCATGACACCCCATACAGCTAGCTATCAGTGATTGTGTAATTTACTTGCAAATGTGTGGAAACGGTTTGGTTGGTTATTTGAGTTTGACACTAAGTCCAGCACGAATACCAGACAGCTCTCCACTATCTTGTCTCCTCACAACAGACTTCATGAACCTGGAATACATTCAAGATTTTAATGTAGGTTTTTTTCAAAAATACACTTGGAATTCAATTTGATCCATAATTGACACTAGTTAAATTATACAAGTTGTCAATTTTGCTATCAAATACAGTATATCATATCAGCATACacactacaaagcaggatcaaggaGTTAGCCAGATAAATTGCCTCTATTCTGAACTAATAAATAACCAAGCTTGAAATGGGCTATGGTCTAATTAACTCAACCTAAGTTTATTTTTCTAAATGATTCAGAAAATCAACAGTTGTTTCTGGTTGTTAATCAAAGtaagctggctaactcattggttctgctttgtagtatacccctcagagGTCCTGAAAGATGTGCCTGCAGGAGGTGTAAGTAATGCCTGCAAAACACTATCATACATAGGATTTGTATACATTTTATACACTGCAACTTCAAGTTTCAAATGTTGTCTACAAACTTGTCCCGTTATGCGGATCTTGGCTAGTCTGAAATTCTCTCTGTTTGACTCTGCGATTGCGGTCAGTCTTCTTCCTCTTTGGTGTAAACCCTTGGTTCTTGGCCATTAGCGGAAAGGATCGAGCAGCATGTACAAATTAGACAAAAGTTTTAAACCGGGAAGGGAATACTCTAACATATAAAGTACTAGAATAATCTGATGAAGGTCATGATTTGAAGTACTGGGTGAAAATGTTTTCTTAATATTGTGCTTTGTACAATGAGTATGGAAACAAATATTGTACATGAAGGCTAAGCTGTACAATAAATAATTACTGCTGTATACTTGTGTGTAACTAATTTCTACATGTTTAAAGGATAATACTCAAGAGGGTGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1706689 lncRNA downstream 57238 78683688 ~ 78683964 (-) True G1492851
TU1706687 lncRNA downstream 59078 78681882 ~ 78682124 (-) True G1492849
TU1706632 lncRNA downstream 67682 78672865 ~ 78673520 (-) True G1492797
TU1706631 lncRNA downstream 69034 78671913 ~ 78672168 (-) True G1492796
TU1706630 lncRNA downstream 69443 78668698 ~ 78671759 (-) True G1492795
TU1706848 lncRNA upstream 86187 78922581 ~ 78922901 (-) True G1492992
TU1706850 lncRNA upstream 88437 78924831 ~ 78925060 (-) True G1492994
TU1706855 lncRNA upstream 99297 78935691 ~ 78935910 (-) True G1492999
TU1706856 lncRNA upstream 100538 78936932 ~ 78937235 (-) True G1493000
TU1706862 lncRNA upstream 110766 78947160 ~ 78947483 (-) True G1493006
XM_021569867.2 mRNA downstream 89359 78642915 ~ 78651843 (-) True LOC110494630
XM_036948232.1 mRNA downstream 233104 78484389 ~ 78508098 (-) True LOC110494625
LOC110494623 mRNA downstream 308629 78427699 ~ 78432573 (-) True LOC110494623
XM_036950726.1 mRNA downstream 351353 78217831 ~ 78389849 (-) False LOC110494620
XM_021569887.2 mRNA upstream 456052 79292446 ~ 79297728 (-) True LOC110494643
XM_021569900.2 mRNA upstream 478806 79315200 ~ 79319147 (-) False LOC110494645
XM_036948234.1 mRNA upstream 478806 79315200 ~ 79319780 (-) False LOC110494645
XM_021569893.2 mRNA upstream 478806 79315200 ~ 79319798 (-) False LOC110494645
XM_021569899.2 mRNA upstream 478806 79315200 ~ 79319798 (-) False LOC110494645
TU1706560 other downstream 265696 78473018 ~ 78475506 (-) True G1492729
TU1706362 other downstream 522159 78214999 ~ 78219043 (-) True LOC110494620
TU1706388 other downstream 652350 78087603 ~ 78088852 (-) True LOC110493260
TU1704739 other downstream 1258813 77481941 ~ 77482389 (-) True G1491128
TU1703698 other downstream 2043106 76696796 ~ 76698096 (-) True G1490147
TU1707296 other upstream 511837 79348231 ~ 79349389 (-) True G1493395
TU1708035 other upstream 1235245 80071639 ~ 80087637 (-) True G1494054
TU1708910 other upstream 1761600 80597994 ~ 80598532 (-) True G1494870
TU1708974 other upstream 1856028 80692422 ~ 80694102 (-) False G1494924
TU1708975 other upstream 1856028 80692422 ~ 80694102 (-) False G1494924

Expression Profile