RNA id: TU1706732


Basic Information

Item Value
RNA id TU1706732
length 2651
lncRNA type sense_over
GC content 0.43
exon number 3
gene id LOC110493264
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78741202 ~ 78836394 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGAAGTCGACCACTACTTCTCAATCATCAGTGACTTTCTTTCGATGTCTTTAAAAaTTTGTCTCCCTGGCTTGACCAGGCATTGCAGAACCCTGGACCCTCACTGTAGATGGGAAGCTGTCTGACGAGTTTTCCCTTCCATTCCATGTAGAGGAAGTCAAAAGGTAGATGACAGCTTTTGCTGAGCAGGATGGTGCTGATCACCTCAGGTCCCCCTGGAGTCTTGCACCATCCGCTTCCTGGATAACTTCAGCCGTGGCCAGCACGGAGCCTCTTCGGCAGAGTACTTACTAGAGTCCGGCTACGCTGTGATCTTCCTGCACAGACACCGCTCCTTATATCCCTTCACTCTGGGATTAATCTGCTGGACAATAGAGGGTTCTGGCTGTGGCCAAGTCATGGTCAACCAGCAGGCACTTCCCAACATTGGCAAAGTCCTGATGCGTTACCAGGCGGTAAAAGAGGCACGGCTTCTTCTGCCTGTGGAGTTCAGCACCCTGTCTGAGTACCTGCACCACCTCAAAGCTGCAGCACAGGCACTCAGGCCCATAGGGTCTACGGCCATGTTTTATTTGGCTGCAGCAGTGTCAGATTTTTACATTCCAGCATCAGAAATGCCAGAGCACAAAATCCAGTCCTCCAATGGACCACTTCAGGTGAGTAAAGAAAGCCATCAAATACAAAAGCACATGCTCATTGATCCACTGTAAGCCAAGCCTCTTCTGTCCTATAGATCAGTATGAAGATGGTCCCCAAGATGTTGTCGCCGCTGGTGGACTGGGCTCCACAGGCATTTGCTTCAAGCTGGAGATGGACCCGTCCATCCTGCTGGACAGAGCTCGGCGGGCACTGGACAACAGGCTGTGGTGGCCAGCGTACTGGACACCAGACGAGGTTATGTAGTGGTGGTGACCCCTTACACTCAGGCCAAGCTAGTACTTACGGATGAGGAAGCAAGCAGAGATGTGGAGATCGAGGACAGTATTGTCAGTAACCTGACCAGAGCTCACAGCCAAATCATAACCCAACAAGACTGAGACCCCAGAGGTGTTTTCATTAGTTGCAATGGAAACTTCACTCCAAACAGAAAACGTTATGCAACAAAAACAGGTTACAACTGGACAAATTCATGGACGTCCCTCCCTGTTTGATATGTTTGCTTCCTAGAGTAAGATCGCTTCTCACAGAATCTGACTAATGAATACACTCCAGTAAACTGTGCTGCTTACTGGGAGGGCTGGCTTTGGTGGTCCGATGAAACACAGTAACGTGTCGTACAAGTCCCTGGGGCAGGGCACTAGCTCTACTTTCTTCTGAAATCTTAATTCATGCTTGTCTAGTTTGGATCTTCATTTTATCTTGCAGGGCTTTCACCGTCCTAGATCAGACATTCATGTGCATGCATATGTAGGTTTCAGTACACACTCTGCCTTTAAAATCTAATATTTACATAATCACAGCAAAACAATCCTTGATCACCTTAACTTTAAGTATCATACTCATGTCACAAGGCAGATTACAACATATTGGTTGTGGAATGATAATGCCAACCAATGAATTGACTTAACCTCATAGCAGTTTGTCAGAGTAATATCACAGACAGAGTACATCAGTAAAGTAACAGACTCGGAACATTAAACTTTAACTGTATGTTGATATTTTATGTGCTGGACAAATCACAAATCTACTCCACAGAGGGAACAGTCTTCCTTGAAGGCATGACACCCCATACAGCTAGCTATCAGTGATTGTGTAATTTACTTGCAAATGTGTGGAAACGGTTTGGTTGGTTATTTGAGTTTGACACTAAGTCCAGCACGAATACCAGACAGCTCTCCACTATCTTGTCTCCTCACAACAGACTTCATGAACCTGGAATACATTCAAGATTTTAATGTAGGTTTTTTTCAAAAATACACTTGGAATTCAATTTGATCCATAATTGACACTAGTTAAATTATACAAGTTGTCAATTTTGCTATCAAATACAGTATATCATATCAGCATACacactacaaagcaggatcaaggaGTTAGCCAGATAAATTGCCTCTATTCTGAACTAATAAATAACCAAGCTTGAAATGGGCTATGGTCTAATTAACTCAACCTAAGTTTATTTTTCTAAATGATTCAGAAAATCAACAGTTGTTTCTGGTTGTTAATCAAAGtaagctggctaactcattggttctgctttgtagtatacccctcagagGTCCTGAAAGATGTGCCTGCAGGAGGTGTAAGTAATGCCTGCAAAACACTATCATACATAGGATTTGTATACATTTTATACACTGCAACTTCAAGTTTCAAATGTTGTCTACAAACTTGTCCCGTTATGCGGATCTTGGCTAGTCTGAAATTCTCTCTGTTTGACTCTGCGATTGCGGTCAGTCTTCTTCCTCTTTGGTGTAAACCCTTGGTTCTTGGCCATTAGCGGAAAGGATCGAGCAGCATGTACAAATTAGACAAAAGTTTTAAACCGGGAAGGGAATACTCTAACATATAAAGTACTAGAATAATCTGATGAAGGTCATGATTTGAAGTACTGGGTGAAAATGTTTTCTTAATATTGTGCTTTGTACAATGAGTATGGAAACAAATATTGTACATGAAGGCTAAGCTGTACAATAAATAATTACTG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016874 ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1706689 lncRNA downstream 57300 78683688 ~ 78683964 (-) True G1492851
TU1706687 lncRNA downstream 59140 78681882 ~ 78682124 (-) True G1492849
TU1706632 lncRNA downstream 67744 78672865 ~ 78673520 (-) True G1492797
TU1706631 lncRNA downstream 69096 78671913 ~ 78672168 (-) True G1492796
TU1706630 lncRNA downstream 69505 78668698 ~ 78671759 (-) True G1492795
TU1706746 lncRNA upstream 27103 78771571 ~ 78804991 (-) False G1492898
TU1706759 lncRNA upstream 30634 78775102 ~ 78775595 (-) True G1492908
TU1706742 lncRNA upstream 31833 78776301 ~ 78815429 (-) False G1492898
TU1706745 lncRNA upstream 32135 78776603 ~ 78815429 (-) False G1492898
TU1706761 lncRNA upstream 32741 78777209 ~ 78778233 (-) True G1492909
XM_021569867.2 mRNA downstream 89421 78642915 ~ 78651843 (-) True LOC110494630
XM_036948232.1 mRNA downstream 233166 78484389 ~ 78508098 (-) True LOC110494625
LOC110494623 mRNA downstream 308691 78427699 ~ 78432573 (-) True LOC110494623
XM_036950727.1 mRNA downstream 351415 78217831 ~ 78389849 (-) False LOC110494620
XM_021569887.2 mRNA upstream 547978 79292446 ~ 79297728 (-) True LOC110494643
XM_021569900.2 mRNA upstream 570732 79315200 ~ 79319147 (-) False LOC110494645
XM_036948234.1 mRNA upstream 570732 79315200 ~ 79319780 (-) False LOC110494645
XM_021569893.2 mRNA upstream 570732 79315200 ~ 79319798 (-) False LOC110494645
XM_021569899.2 mRNA upstream 570732 79315200 ~ 79319798 (-) False LOC110494645
TU1706560 other downstream 265758 78473018 ~ 78475506 (-) True G1492729
TU1706362 other downstream 522221 78214999 ~ 78219043 (-) True LOC110494620
TU1706388 other downstream 652412 78087603 ~ 78088852 (-) True LOC110493260
TU1704739 other downstream 1258875 77481941 ~ 77482389 (-) True G1491128
TU1703698 other downstream 2043168 76696796 ~ 76698096 (-) True G1490147
TU1706741 other upstream 26272 78770740 ~ 78771954 (-) True G1492897
TU1706762 other upstream 33884 78778352 ~ 78781395 (-) True G1492910
TU1706752 other upstream 59392 78803860 ~ 78813955 (-) True G1492901
TU1706748 other upstream 62671 78807139 ~ 78815429 (-) True G1492898
TU1707296 other upstream 603763 79348231 ~ 79349389 (-) True G1493395

Expression Profile