RNA id: XM_036948241.1


Basic Information

Item Value
RNA id XM_036948241.1
length 8248
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110494637
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78747838 ~ 78914408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGGATGTTGATTAAAAAGCGAAACGTTTTTAATTATAACCCAAATGTTAATGCCGTCCCAAGTGAAGAAAATGTTTAGGCTTTGACGAGGAGAACTTCTAATTGACTGAACCAAAGCTCCACTCTTCCAATTTAGAGTCTTGTTTATTTTTCTTGACTTTTAGCACTAAATGGGCTTAACTGCTGTTGTGTCGTTGGGTGTCATTTGACGTTATTGTATGTCATCAATGCCCAACCGGAGCGGCCTAGCCTGAACCCTGTCTCCATTTCAAATTCATGACATTCTAGCTCTGCAGGGATTTCTGATCATGCTTTGCCACCCAGGTAATTCCTTTAACTCATGCTTGGGCAAATTCAGCTTGTTCTCATTTTAACACACTTCGGTTGCGACTTAATTGATTTgtttttgtcacatacaccggatcggtgcagtgaaatgtgttttacACCCCTGGagtaaattagggttaagtgccttgctcaaggggacATCGATAGATTTATCACTTTGTCTGCTCGGTTATTCGAACCAGcagccttttggttactggccaagcgctctaaacgctaggctacctgccgcccttggAAGAGTGCTTGTGCACAGTCATTTTCGAAGGGGATGATATTGGATTCACAAATACACCATATTGAGCTGGAACTCAAAATGAAGACACAGCAGTTTCTTGTTTTATTCAGGTAGAGTCTCTATACATTATAATTGCAGGAGGATTTAGAAGACTTCCTGATAATGTGAGTTTGCTGTAGCTACTGACGACACTGGAGCGAAACCTCTCTGGTCCTGAGGCAGTGCTAGCGCCAGCGCCTCCTTAGCTtgctgcctgcctgccccagAGCCAGGCTCAGGATTTAATTGTGGCTTATTGGACAGGATCTGGGGAATGCTGATGAGGGAAAGGCTCTCAATAATGCCACAAACGGTCCTCCTGCCAGTGCCTTAAGTGGCCTATTTGTGATTCAGCATgcatgctctctttctctctccctcttccgctCCCTGTCTAACTGCCAGGCTGGCATGGAGTCGAGCTCCCAAGGGGTGAGTGTGTTAATGCGGGCCTCCAGGCCCGGGGACCAGGGTAATTGGGTTTGCATGGTCGGTGTCAGGGCACCACCACTGCTCCCTACATAAAGGCCACCTCCCAGCCAAGCTgttcaggacagagagacaaacccCTCATCACTGGTGTAATTCATTGGAAAGGCTTATTGAATTACTGGAATGGTGTATGTGCTTTTTGTATGAGGGCCTGCTGCAGATTGCACAATGAGCTGAGGGCCTTGTGTTTGCCTGCCTGCTTGCGtgttcagctctctctctcagctcagaCGCTTGGCTCTGAACACTACCGTGAATAACGGCAGACGGCTGAGAAAATCTGTAATATCCCCAAATGGCGTAATTACTGCAGCTTCCATTCAGATAACCTTCTCTTGTTTCCAGTGCCTGTTTGACCATGTCTGCATGTAGGGGTCACAGAGCCTGTTGTCTGCCTTGTGACAGCCTGGAGGCTGGAGCTTTTTGGCTGGGCCTCATCCAGCCCTGACTGGATGGGCTGGTGTCTGCTTCAGCTTAATGTTGACATACATGCACATCCATGTAGACTGTTGATTTGTCTGGTTTGTTTGATACTAAGTGATTGGAGCCCCCTCACTAGTATGTTATGCTCATAGCAACAAGAGTGAAGGTGTTCATTTCTTTGCCTGCTTGCCTTTTTTAGGTCCAGTGGGTTTAAAAGAAACCCAGCATTAAGGTTTGCAATGTTGACTAGTCTCTTCCGCCTGGCTATGTGTAGCAATAAACTGACCCATACACCACACAGTGGCACTCTCCTCTAATTGGAAGTATAATTCTGAAGTATGATGATCAGCCACTGGTGAGGTGGGAACAGGGGAATCGGAGAACCCACCTCCCCTGCAATATACTACATTATACCGTTGGCTACTTCACTCAATCACCAGACCCAACCAACATAAAACAGGCTCTCAACATAACATAACTCGCCACCACAATcctactccacacacacactgtgaggaCCACCGACTGAAAATAGCAGCTGTCTCAGAGCCCAGCTTGGCTGTGGTCTTCAATAAGCCCAACAATGTGCTCAGCAGTGTGAGCAGTGAAGTGATAATTGACACATCCTAAAAATTCAAGAAGGCTGTTGTTAAtgttccttctcttcctctgagtGGATTTAACATAACCACTTTAAGACTTTAATTGACAAGGAATACTGCCATTAAAGCCGTTGCCTTGGCACTGCCATTACCTACTTTTTCGTTTTTTAAAGATGAGACCCACTTGGGGCGTTCACACGGCACCATTACAAAAGCTCACGTGGAATCACAATGGCCAGCCGTGTTGCTATTTtagtttctgtttaaaaaaacataAGTCCTCCAATAAGCCCTGTGCCTCCAGGGCTGGAAAAAGTGAGGAATCTCACTTTGTCTGCTGGGCAGGTGAGCGTGGTTCCCACCCCTCCCTGTTTCCCCCCTTCATATCAGTAGGAAAACAAGGGCTTCTCCAGCGCTGGAACCAGTCTGTTGATATGGAAGGTATGGCCAGGGTTTCAGTGGAGAGAGATGATGCCAAAAGCTTGTTACCAGGTTACATCACTGTTGTTGTGAGTTGTGTGCCAGATCTTCAGGCGTAGCAGAGGGAGCTCGCAGAGCCTTTCCTCTCTCCGTCGCCAAGCTACCGTCACGCTCtcctcacacacaccaacaggcCAGGCTGTGGGCAGTATTTAACCATCATTGGTTTCACTCAGAGACAGCTAGATCGCTGAAGCCCTGAGCTGGGGGAGCCCTGTCCTCAGCCTCCACTCAACTCACCTGGCTTGCATTTTACCCATCAACTCCCTTCTTACCACGCAGACTCGCCGCAGCCCAGCCTGTCGTCACTATGACGTCGGAGCTGGAGAGTAGTCTGACCTCCATGGATTGGCTGCCTCAGCTGACCATGCGGGCAGCCATCCAGAAGGCTGATGCCCAGGGGCACCACGGGGGGCCGGGCATGGCCAAGAAGAGTGCAATGCTGGACCCCAAcaccactctggaccaggaggaGGTCCAGCAGCACAAAGACGGCAAGCCGCCCTACAGCTACGCCAGCCTCATCACCTTCGCCATCAACAGCTCGCCTAAGAAGAAGATGACCCTGAGTGAAATCTACCAGTGGATCTGTGACAACTTCCCCTACTACCGGGAGGCAGGCAGCGGCTGGAAGaACTCAATACGGCACAATCTGTCATTGAACAAGTGTTTTCTCAAAGTGCCTCGCTCCAAAGATGACCCAGGAAAGGGCTCCTACTGGGCCATCGACACCAACCCAAAGGAGGACGCCCTGCCCACACGGCCAAAGAAGAGGCCGCGGTCCGGAGAGCGGgctTCCACACCGTACACCCTGGAGTCGGAGTCTTTGGGAATGGACTGTATGATCTCTGGAAGTGCCTCTCCAACTCTGGCAATCAACACTGTGACTAACAAGGTGGCATTATACAACCCAGACCAGGATGGGAGTGACAGCCCAAGAAGCAGCCTTAACAACAGCCTGTCTGACCAGAGTCTGGCCTCCGTCAATTTAAACAGTGTGGGCAGCGTGCACAGCTACACGCCGGTGACTAACCACCCAGAGCCGGTGTCTCAGTCGATGAGCCTCCAGCAGCCCCTCCAGCCCCAGTACAACATGCCAGAGAGGGACAAGCAGCTCCTCTTCTCCGACTTTGAAGATCTCAGTGCCTCCTTCCGCAGCCTTTACAAGTCTGTCTTTGGGCAGTCCTTCAGCCAACAGGGTTTGATGGGCATGCCAACGGAATCGTCCCAACAGACCCACACCTCCTGCTCCTATCAGCACTCACCCAGTGGCACCATTAGCACCCAGAACAGCCTGACAAACAACCACTCCAGCAGTGGTGGCCAGGTGCCCCTGTCCCACCCTCCCCAGCTCCCTGGCCAGAACGCCCACCCGGGCCATGGCTCGCCCCACACACAGCACCTCTCCCAGCACGGCCCACACAACCAacacacccagcaccaacacccACAGCACCCCCATCACCCTGCACACTCCCAGCATGGTCCGCACCCATCACAGCACACGCCGCACCCCTCCCAACACGCACAGCACACCCAGCACCCCTCCCAACACTCACAGCAGCACGGCCAGCACCCctcccagcagcagcatcagactCTGGCTCACCAGCCCCATCCTGCCCAGCAACAGATGGCCTGCAACACGGGTCTGCCCTCTGACTGGTACCCAAATCTGGACGCACTGAAAGAGAGCTGCCGTATTGCCAGCAGTTATAACTGGGCTGATGTCGACCTCTCACCTTTTCAAGGACTGAAGGAGAGCATGAGACTAGCAGAGCAGAACAACTGGGCCCTGGAGCCCACACAGATCGCAGATCTCTGCTCATCTATCAACCAGTTCTTTGCCCGCACCGGTGTCATTCAGCCACAGGGGGCAGTGCAGCCCGTACCCGTATGCCATGGCTCCATGCACCCCAACAAGCCCAGCCAGCACATGGCCACAGGAAATCTCTACATGGACTCAAGACAGAGCATGTCTATGATGGGCCCCCCAGGATACCCCCACATGCCCCCAATGAGCAGCGCAGGTCCCACAATGACAGGACACCATGCGCAGATGAACCAGCAGCACATGATCTCTCCCAGAAACTTCCAGATGCACCGCATGCCAGCTGATGACATCCAGGATGACTTTGACTGGGACTCCATTGTCTAATGTTAGATGTTCTGCCCCTAACAAGGAACGGTCAGGTGGTGCAGAGCAGGTGGAAGTAGGAGGAAGAAGCCAGGCTGAGCTGTACGCTCTAGCGAGGAGACTGACTGTTGCTGGTGGGATACAGAACAGAAGAGCAGGTGTTGTTttgggaggatagagggagagacttCAGAGTGCTGCCATTTTTACAAACAAAATGAAACATACAAAATAAATGTTACTTTGAAGACAATCATATTTACTAGGACATGTTTAAGTGGTGGCTTATGTGCTTGTCTTGACCAGGCAAGTAGCACACGTTCATGTCGAAACAAATCCTCCAGTCCTCGTTCCTCAGCCAgccctctcccatccccctcccaGCCAGCAGCTTTCCAAAGTTCCCCCAGCTCCCTCCGTAACTGTTGTGTGATTTGAGCGACTTGTTCCGCTTGTTATCCTTCTCGTGTTGACTTTAGGCCTCGGCTGCCTCTTGGATGAGTTTCTCTCTTTATTCCTTCTTATTTTATGGAAAACGCAGGCCGCCTGTGGTGCTTGTTGGTTTGCTTTGGGTGGACGATGGAACCCCAATAGTGGGTGTATTGGTAGGAAGGTTAGGATCCGCAATAGTGGGTGTATTGGTAGGAAGGTTAGGATCCCCAATAGTGGGTGTATTGGTAGGAAGGTTAGGATCCCCAATAGTGGGTGTATTGGTAGGAAGGTTAGGATCCCCAATAGTGGGTGTATTGGTAGGAAGGTTAGGATCCCCAATAGTGGGTGTATTGGTAGGAAGGTTAGGATCCCCAATAGTGGGTGTATTGGTAGGAAGGTTAGGATCCCCAATAGTGGGTGTATTGGTAGGAAGGTTTACAATAACTGAGGTTATGTTTTGAACAGGGTGTTTTGCATTGAACTAGGCTTCACATAAAGAACACAAATACTTTATCATAGAGCGTTGTCCTTTAACCAACACATCTGGCCCATTTTTTTAAGCTAATTGTGTACATTCAGAAACATTACCGGCAGTATTTGTTGTGGTTTTGTGTCTATTCTGTTAACAATGTCATACCTTTATCTCTTTATCTCCAAGACTGAAACTGGTAGATGAATTCCAGACCTCATCAGACCTCATCACCTCATAATTTCCCTGTACTAGTGTATTAAGGGAATAGTTTGTAGTTAATACACAAAATGAATGAGTACAAGTATACACCTGTAGGTGTCTTTTCATATATTAAACTCTGTGTACATGCAGCACAATGAACTGTGGGATATTTTCCTGTTATCTTATGATGCAGGAAATGTACTGATATAACTTAATTACTACAAACAATAGGAATGTTCTTCATTCAGATGCTATACGTCCGAAGTCATCAGAACTGATCTCCCAAATATCTTCTTGGTTGTGACCATCAGACTTACACTGCAAGGCATAAAATATGCTGAAATACCATATAAAAAGGGAACGAGGTGTGTGTTTGCCCTAAAATTACAATAATCTGCATATGCTATCAACGAGCACAAAACAGATGCAGAAAAAAGAGATGAAAGCAAGGGTTCAAGGCAGATGTGCATTTTGCAGGCAGGGTTTCTTATGTAGAGAAATGAGCTCTGTCTGATCAACAGCCAGGTGGAGGATGGGAGACTAGAGGTTCTGGAAAcactcctgtcctctctgtccctctttgtcGTCTTAATCAGACTGGCCCTGAACTTCCATCATGGTGCTGCGTTAAACCTGTATGGGAGCTTTGTCTGGGTAGAGCACAGTTCATCTTCCCTTTTTAATTTGTTCCTCCACTATTGGCCCTTAGATAAACTAAATCTTTGGCTGGattttgttttactccatttcTGAAAATCATGACATTGTTTTGTAATATCACATAAACACCGCTGGGGCCAGACACCAATATGTCTCTTGTGACAGTGTACATGTGTAGATACTGAACCGCCATTGTCCTTTTGAAACAGGAGGCAGAAGACAAGAAGGGAAGCTTGGCTGGAGCTAGTGCTAGCTCTTCTCACAGCTAGCTATACTGCCAAGCATATCTGCAAGGTTTCACAGATCTTTTAGCAGCCAGTTCGTTAATACTGCCCATTGTTTTGAtcttaaatgtttttttctttcttttcctCCATCTTTTTCCTTTTCTTACTTCTGCCTCTTTTACCTGTACCGGATTTTCGGTTAGATTCCCAAATGTTCATTGTATTTGAAAGCGTTGTGTGTGGCTGATTGTCCTGCCTGTGGATACCCATTGAGTGTTTAGTCTTTGTTTAATGGCcaaaatcagtcagtcagtcagtcagtcagccagccagccatttaAAGCACAGTCTGATTGCTCATTCAGTTAAAAAGCCAAGATCACTTAAGATTGTCAATCATTGAGCCCTTCATTAGTGAAGGAGGACTACTTTATGGAGAAAAGATCAGTGTAGTGCTTTTTAATTGACCATTTGATTGCTAGTTGAAGTCAGTGTGGGTGCTGCAGACTCTGGGACTCACCTAAGGAATGGGTGTTTTGAGGAACACAGTGAGAATATGGATATAAAAGTGATAGGGAAGTCTTGGCAGCCCATGGTTTTGTATGTTGCATTTCATCACTGGTAATGATGAAGGCACTAATGAAAAACTCTCGGACAGCCTTAGGGTATGTAGTAAATCCACCCCCACAGCTCAGAGGAGATGGGATGGGCTGGAAAGAGCTCATGGATGTGATCAGAGGTAAAGAGGAAGGGAAAGACGATGACTGGATCACCctcttaactgtgtgtgtgtgcttgtgtgtctgtgtgcgagtGAGTACATTTTGTTTAAAAAGACCATTCAATTTTTTAAATACTGCTGGAGATGTACCTGCCAGAGAGATTACTATGATATGAAAAAAGAAAATCAGCCTTGTTCGCTTGTTACATTATGGAGAAAACTGCCAAGAAGTACTGCTGATTGAGGCCTATTTTATTCAGTGCTGGTGTGTTGTTGTGCTTCTTGTAAATAAATGTCTTTTCAATCATCCCTTTTTCCTCTTGGGGGCGGGGCATCAAGGCAAGGGGTTGGTCTTACTCATCAGAGGGAAAAGAATAGAGTATTTTGTTAATGTCCAATCAGAGGGTGAGACCGtatgtgtatatatctatattGTATATATGTGATGAAAATGTGTTGGCTTTTTGTGACACTACCTTTTACCTGTACTATGGTTCTACATTCAGTGTTTCAATGTTgataatatatattttatgtttttcagtttttgattttgtCTTTGTCATTTcttgtatttgttttcttttctCCTTTTTGTCCTCTTGGTTATTGCACGGTTTATTACTTTTGCTGTCCAATGAGGTGATACAGCTACTCTTTGTATTGGTTTAGTGCTGTAAAATAACTTGTTATTAGAGTTGTCGATACCACCCCCATCCCCAATATGCATGAATGGCACttaaacaaataaaatgttaacTTCACTGTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1706065 lncRNA upstream 303 78794009 ~ 78829586 (+) True LOC110494637
TU1706089 lncRNA upstream 18922 78779964 ~ 78810967 (+) True G1492314
TU1706091 lncRNA upstream 48291 78780486 ~ 78781598 (+) True G1492315
TU1706074 lncRNA upstream 49506 78778354 ~ 78780383 (+) True G1492300
TU1706082 lncRNA upstream 83352 78746260 ~ 78746537 (+) True G1492308
TU1706146 lncRNA downstream 20727 78935135 ~ 78935476 (+) True G1492369
TU1706148 lncRNA downstream 21939 78936347 ~ 78936629 (+) True G1492371
TU1707047 lncRNA downstream 331547 79245955 ~ 79293250 (+) True G1493174
TU1707063 lncRNA downstream 375888 79290296 ~ 79291967 (+) True G1493185
TU1707064 lncRNA downstream 384137 79298545 ~ 79306714 (+) False LOC110494644
XM_021569874.2 mRNA upstream 100892 78719388 ~ 78728997 (+) False LOC110494635
XM_021569873.2 mRNA upstream 148590 78674377 ~ 78681299 (+) False LOC110494632
XM_021567522.2 mRNA downstream 8266 78922674 ~ 78931715 (+) False LOC110493265
XM_036948225.1 mRNA downstream 8527 78922935 ~ 78931715 (+) False LOC110493265
XM_036948224.1 mRNA downstream 9162 78923570 ~ 78932811 (+) True LOC110493265
XM_036948231.1 mRNA downstream 38680 78953088 ~ 79190410 (+) False LOC110494640
XM_021569880.2 mRNA downstream 38680 78953088 ~ 79191687 (+) False LOC110494640
TU1706085 other upstream 54162 78773229 ~ 78775727 (+) True G1492310
TU1706084 other upstream 56130 78770747 ~ 78773759 (+) False G1492310
TU1705741 other upstream 576581 78252629 ~ 78253308 (+) True G1492003
TU1705667 other upstream 639599 78189012 ~ 78190290 (+) False G1491963
TU1707053 other downstream 415211 79329619 ~ 79336072 (+) True LOC110493267
TU1707042 other downstream 468237 79382645 ~ 79385437 (+) False tusc2
TU1707040 other downstream 469387 79383795 ~ 79385437 (+) False tusc2
TU1707041 other downstream 469387 79383795 ~ 79385437 (+) True tusc2
TU1709446 other downstream 2379032 81293440 ~ 81293926 (+) True G1495346

Expression Profile