RNA id: XM_021569878.2


Basic Information

Item Value
RNA id XM_021569878.2
length 5142
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC110494640
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 78953088 ~ 79199957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCGAATCTGCTTTCAGCCTCGCACAGACACAGAGCAAGATCACAGCACTACTGGAACAGCTGCACTCAGGGCTGCTTTCTCCAACACTCCTGCACTCTCTcactctaacagacacacacaggcacgtcCAGAACTCTACCACGCAAGCGCTCCTCACACACTCAGGCAGGCACACCCCCTCTCATTATATGTGCAGTGAGAAGCTCTGCTCTGCTTGTGTGGGTGTGAGCAGTgggctgtgtttctctctggcagcaacagcagcactaGCAGCAGGACTGGTCCAGTGGAGGGCAATCACCTCACTCTCTCCAGACTCCAGGACAGCTCACCCCCAGGACTCGGGAAGCCCTCAACaagcctttctctctctgtttcttgttctctctatctctccattctcactctctctctgcctcgccgTGACGCAGTGTTTCTGACCTTCATTCCCCTAGTGCACTCAGTGTGGACCAGTGGGACAGCCATGGAGGATACCCTCACCTGCAGCCCCGCCACCTTTTCCCAGGTGTTCGGACGTCAGGGACAGCTCATGCAGGCCAcgGTCCAgtccctgaacagtctgaatgacCAGATAGCCCACTTCATGATGACCAGGCCCGGCACTCTGTCCCGGGAGGACGAGGCCTTCATGCCTGAAGAGAGAGACACCTTGAAGGATTCCATGGCCCTGATGAGGCACCTACTGTTGGACGCACAGGGGAAAATCCTTAAAATGATGGAAGACAACAAGCAGCTGGCTCAGAGGATCGATGGGGCCATCCAGTCTGCCAGTCAGGAGGTAACCAACCTGCGCTCAGAGCTGTCGGCCACCAGCCGTAGACTGGCAGAGCTGGGGGCCAGCAGCCCCCCCTCGCCCCTGGTGAACAACCATCAGCACCACCACGACCATGACAGCCTCCGCTACCGGGATCCTGCCGGTAATTACAGGCAGAAGTCGGTGGTGAGCGATATCTGTTACCAGACAGAGATCTCCAGCCTCATGGACTTTGGGACTCCAGACTCCTCGCTTGATAAAGtgttGCTGCGTGAGGAGGTGGCCCAGCTGCAGGAAGAGGTGCACCTGTTGCGGCAGATGAAGGACATGTTGAGTAAGGACCTGGAGGAGACCCAGGGCCAGGGAGGCTGCTCCTCCAACCTCCTCTCTGACACTGAGCTCCGCGTGCAGATGGGAGACAAGGAGCAGGAGCTGGACCGAGTCAAGGAGGCCTTACAAGcTATGAAGTCTGACCGTAAGCGTCTGAAGGTGGAGAAGGCAGACCTGGTGAACCAGATGCAGCAGCTGTACACCACACTGGAGAGCCGGGAGGAGCAGCTCCGAGACTTCATACGCAACTACGACCAGCACCGAAAGGAGAGTGAGGATGCAGTGAAGGCCCTGGCTAAGGAGAAGGACGTgctggagagggagaaatgggATCTGAGGAGGCAGACCAAAGAGGCCACAGAGCAGGCCTGCATCCTGCGCTCTCACATGGACATTAAGGAGAACCGCATCAAAGAGCTGGAGGCTGAACTCACCATGGCAAAACAGTCCCTGGCCACGCTGACTAAGGACGCGCCGAAGCGCCAGTCCCTGGCCATGCCCTCAGAGCCGGTGGTGAACGGCAGTCAGGAGTGGGCGATGCAGGGAGACCTGCCCCTCACCGCTGCCATCCGCCAGAGCCAACAAACACTCTACCACGGACACACTGTGGACCGCCAGgcggTGGTCAGGGTCAGTCCCTGTCACTCCCGCCAGCCCTCTACCATCTCGGACGCGTCGGCGGCTGACGGGGATCGGTCGTCCACCCCCAGTGACATCAACTCCCCCCGCCATCGGACACACTCCCTCTGCAATTCTATGGAGGACCTGGAGGACCAGAAGCGTAAGAccaagaagaaggagaagatgtGTCTGGGCTCCCTCTCCCGGGTGTTTGCTCGGGGAAAGCAGCGCAAGTCAATGGACCCGGGCCTGTTTGATGacactgacagccTCTCCAGCCTATCGACACAACAGCACAGCCTATCAGATGGAGAGGAGCAGCTGGACCGCCTCCAGCAGGCAGAGCTCACTCGGAACATGCCCATGTCACTGTGGAAGGCAGGGGTAGTACAAGCCTGGCTGGAGGTTGTCATGGCAATGCCCATGTATATCCGTGCTTGCACGGAAAACGTCAAAAGTGGCAAGGTGTTGCTGGGGCTGACAGACGAGGACCTGGAGCTGGGACTGGGTATCAGTAAGCCCATGCACCGCAGGAAGCTACGCCTCGCCATCGAGGACTACAGGGAGGCAGAGGCTGGCCAGGGGCTATCAAAGGCTGCAGAAATGGATCATCACTGGGTTGCCAAATCTTGGTTGAGTGACGTCGGGTTGCCACAGTATTCCCAAGCCTTCCAAAATCAACTGGTGGATGGTCGGGTGCTCAACTCCCTCAGCCGACGAGACCTGGAGAGACTCCTGAACGTCACCACAGAGTCCCACCAAAACAGCCTGCTCCTGGCTATACAGCTCCTGCAACTGATCAACTTCAACAAAGAGGTGCTGCAGGCTCGCCGGGCCCAGTGTGAGCACCAGCACCAGGACCCTGTAGTTTGGACCTGCCACAGAGTCATGAAGTGGATCAGAGACATAGACCTAAAAGAGTATGCTGACAGTCTCCATGGCAGGGGAGTCCATGGTGCTATGCTGGCTCTGGACCCCTCCTTTGATGCAGATGCCATGGGCAGGGCCCTGGGAATCCCCAGCCACAAACACATGCTCCATCGGCACCTATATGAGGAGATGAAGGCTCTCGCCATCCCTGCCAGGCATAGTCGTGTTGAGCAGGATTGTGATAAGTCGGGAACCCCACCACAATCACCTTCTGTTGTTAGCCGCTATAATGACGAGAGTGTCTCCATGAGACGAAGACCAGGCAAGAGTCCTCTAAGGTTCAGCCCAAAGACAGCCATTGGACGGGGCCTTGGTTACCATGGCAGCTGTGGATCTCTGCCCAGAGAGGCGCGGGTGCAGGCTGTGCCCAGGACGAAGGGCAGTCCCATGCACACCTACAACAGTGTTGAGATCACCAATGTCTAAACTATGCAGAGCCACCAAGGATTTCAATGCAGTTTCCATTTAGCCTGAGGTGGATACTGGTGGTTGGACTCAGAATCAACATAATACCTGCTTGTTGACAGTCTAAGTTTTCATCTTATTTTTTGGAATTAAAATCTTTTTCAACTTTAGAGACATTTTCTTTCTTTTGTTGTACAGTAAATGTCAATAGATCAGTGGACGTAATGCCTTATGTTTGAATCGGGAAAACTATGAAAATGTGGTAACATTCAAAATTCCACATTGCAACACTGGTGCCATGTTTCCTTTCTAAGAATGAACATCACAACATTTCTTTATCAAGGCATCTGTTGTAACATCTATCAAGGAACATTATGCTAATAATGTGTTTCCGCATATCAAACAAAATAATGTTGACCTGTAAAGGAAAAAGTCACTTCTGGGCAATAAAACAAACCATCCCAAGTCCATGGAGGCTGAAAGTGGTCTGTTCCTGATGTTGATGAAAATGTGGCCATGCGAGGAGGACACATGGAAGGAAGACAGACGCCTGATGTCCTGGTTCTTTGATGTCTATGCCCTGTTTCCTGTATCTCACTGTCTGGCCTGCCTCCCCCTGCAGGGGTCTGATGTTGGCATGCCTGGGTTTCCTGTATCTCACTGTCTGGCCTGCCTCCCCCTGCAGGGGTCTGATGTTGGCATGTATAGGTTTCCTGTATCTCACTGTCTGGCCTGCCTCCCCCTGCAGGGGTCTGATGTTGGCATGCCTGGGTTTCCTGTATCTCACTGTCTGGCCTGCCTCCCCCTGCAGGGGTCTGATGTTGGCATGTATAGGTTTCCTGTATCTCACTGTCTGGCCTGCCACCCCCTGCAGGGGTCTGATGTTGGCATGCCTGGGTTTCCTGTATCTCACTGTCTGGCCTGCCTCCCCCTGCAGGGGCCTGATGTTGGCATGCCTGGGTTTCCTGGCTCAAAAGTTGCAGATGACTACTACTTGGAACTTGGAACCTGTTCTTTGGAACCCTCCATTCACTGGGTTCTGTGTAAGGTTATCATTACATTCTATATTGTGAGAGACAACAGCCGTGAAGAGAATTAGGTGTGGGGGAGCAGAGCTTTCTCTTTGTTCAAATAGCTCAAATGTGGCTAAGAGGTACAGATAAAAacctaatcaaatgttatttgtcacatgcttggtaaacaacaggtgtagactaacagtgaaatgctgacttacaggtcagtttccaacaatgcagagttaaagataaaaaatgtaataaaaatacaGACTACAGCTTGATATGTTTGTCATAAATATTCTTAACTTTACTGAAAGCAATAAAAGCACTTCACTTCCATGTGTCACTGTAAATATGGGGGAAATAATGTATTACAATATTACTCATCAATTCATTAGAAGGTAAAGATTTAGCtacagtgtgtctctctgtgtcacagAGATTACaatgttgtaaatgtttgtaCATTTTGCATTGCAGATAATCAAGGACCTCAAAGAAAAGAACAGTTAAATAATACCATGGTTTAGAATGTCTTCAAAGGACAGAATGTCAAGGGAAATCTTTGTTTTATTTTCAATAACTAAATTATCTTTACCACACATGATTGTAGCAAGAGTGCATGCGGCGCCTAGGGCGATGCGCCTAGGGGAGGGATCTCCTCTGGGCCCCGAAGGACGGGACGATGATCTATTCAGAAGAGCAGGATGAGGTGAGCTTGATAAATACTCACCCCCCTCCTGTACAAGGGACTGaagacagccttttaacaaagtgactttttaacatggtttttcatgtcttaaaaatgttttacctttgttagatcattagtacacattttaaatggcttttacaGATTTGATGTTTTTACAAGGAAAGTACTTTTATCCATGGTTGTTTTCATTGGTTTTAACAACATGTACTTTTTAACAAATTTAAATGTAACTTTCAAATGCTGTGTTTTATGCTTTGTTGCCGTTTTTATGTGTAtcaatgatgtaaaaaatgtatgagctGTTTTTAAAGGAAATGTGTCAATAAAACTTTTCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1706148 lncRNA upstream 16459 78936347 ~ 78936629 (+) True G1492371
TU1706146 lncRNA upstream 17612 78935135 ~ 78935476 (+) True G1492369
TU1706065 lncRNA upstream 123502 78794009 ~ 78829586 (+) True LOC110494637
TU1706089 lncRNA upstream 142121 78779964 ~ 78810967 (+) True G1492314
TU1707047 lncRNA downstream 45998 79245955 ~ 79293250 (+) True G1493174
TU1707063 lncRNA downstream 90339 79290296 ~ 79291967 (+) True G1493185
TU1707064 lncRNA downstream 98588 79298545 ~ 79306714 (+) False LOC110494644
TU1707055 lncRNA downstream 113634 79313591 ~ 79314838 (+) False LOC110494644
TU1707054 lncRNA downstream 113832 79313789 ~ 79314838 (+) True LOC110494644
XM_036948224.1 mRNA upstream 20277 78923570 ~ 78932811 (+) True LOC110493265
XM_021567522.2 mRNA upstream 21373 78922674 ~ 78931715 (+) False LOC110493265
XM_036948225.1 mRNA upstream 21373 78922935 ~ 78931715 (+) False LOC110493265
XM_036948239.1 mRNA upstream 38680 78839491 ~ 78914408 (+) False LOC110494637
XM_021569885.2 mRNA downstream 1444 79201401 ~ 79216532 (+) False LOC110494641
XM_036948257.1 mRNA downstream 1912 79201869 ~ 79216532 (+) True LOC110494641
XM_021569886.2 mRNA downstream 21323 79221280 ~ 79273445 (+) True LOC110494642
LOC110493266 mRNA downstream 77344 79277301 ~ 79288650 (+) True LOC110493266
XM_021569888.2 mRNA downstream 98563 79298520 ~ 79314874 (+) False LOC110494644
TU1706085 other upstream 177361 78773229 ~ 78775727 (+) True G1492310
TU1706084 other upstream 179329 78770747 ~ 78773759 (+) False G1492310
TU1705741 other upstream 699780 78252629 ~ 78253308 (+) True G1492003
TU1705667 other upstream 762798 78189012 ~ 78190290 (+) False G1491963
TU1707053 other downstream 129662 79329619 ~ 79336072 (+) True LOC110493267
TU1707042 other downstream 182688 79382645 ~ 79385437 (+) False tusc2
TU1707040 other downstream 183838 79383795 ~ 79385437 (+) False tusc2
TU1707041 other downstream 183838 79383795 ~ 79385437 (+) True tusc2
TU1709446 other downstream 2093483 81293440 ~ 81293926 (+) True G1495346

Expression Profile