RNA id: XM_021569885.2


Basic Information

Item Value
RNA id XM_021569885.2
length 2006
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110494641
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79201401 ~ 79216532 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAAAGTGAGACTACGTGCTCTATGACCAAGGAACAAAGAGTTAACGCTTTACAATAGGGGGGAAGTTGGACAAAGTTCCTGTCTAACATATTCCCTGAATTCTATAGAGACTACCATCGGGGGAAATACACACGTTAATACATATTTCAGATTGTGTAAATAGCAGGATTACATTCTGGATACTGGGGTAGCAATATCATAATTTTGAAGACACCTGCGATACATCAGGTATTCGATTGGGAGGGAATTCATTGGGCGTTTACCGCTGGAAAGAATAAGATTAGGTCTACGGGGTTCATCCCTTGAGCCTCCTCTCCCCAGTCTGCTGTATCTGATTGTGTGACACTTCTGGTGGGTCcacgtgggggggggggtgatgtgttCCAGTGGCGGTCCAGACAGCTCCGGCTATGGGGGCAGCCGGTCCGGCTCCTCATATGCTCTGTGTGCCTTGGGGGTGGGGCTCATAGCCCTGGGCATCGTCATGATCGTGTGGACTGTGGTGCCCGGGGATGCTCCCCAGACAACCAAGGCTCCGGGCAACTTCAGTGTTATTGTACCAGTGGACCATGctggggatggagagaaggacagGGAAACAGCGAAGACCTCATCAATAGCCTATGTGCTGGTGGGGGCGGGggtggccatgctgctgctgtCCATCTACCTGGGGGTGAGGAACAAGAGGAGGGGGAGCCAAAGAGGACAGGAGACACAGGTCCCCTTTGTGGACCATGTGGCTGGGGAGGCAAGAGAGATTGCAGGGGAGCCAGCACCAGCCTACGATGTGCCCAGCTATGAGGAGGCGGTCACCAGTGGCCAGTACCCCATACGCCAGAGCAACTTACGCCACAGCACCTCCCAGCTGCCTTCATACGAAGACCTCATCAGTGCTGTGGAAAACGAGGGGGAGGGACCAAGAGCAGTTACTTCAGAGGAGGTTCCTCCCACCACTCCGGCCCTGGATCCCCAGCCCACCCCCGCCACTGCAGCCAACCCCCCCACCCGCAGCAGCAGTCGGGCTAGACGGATACTACGGCCGCTCAGGGTACGCAGAATCAAGTCAGAGAAACTCCATCTGAAGGACTTCCGTTTTAAGGTCCGCAACCCTACTGATGTGAAGGTGACCATTGAACCCATCACGCCACCACCACAGTATGACGACAAGATGCCTGAGTTCTGACAGCGCCCTCGGGCTTGGGAGGACTACAAGCATTGTTTTTCAATGTTGAGTAAAACAACACTATTGCTGGATCAGATGGACTAATAATAATACCATATTTGGAAAGCAGAACCATTATACCAGATGCTTTGTGAATATAGGCCCTGAACTCACATaccatctcagagtaggagtgctgatctaggatctgtccatgcaatcttattcattatgaactGAAAGGCAAATCCGATCCTAGTTCAGATCTCccactctgagacactttgtggataCACGGGCCTTGAGTCCAGAGGCCTGGCTGGGAGTCTTCTTCCTTCACACTGAGACCAAGACACTGACATTGTTGCTTTGAATCAAGATGTTTCTCTGCTCTATCTTGACTTGTTTATTGAAATCTGCTTAATGGCATATTTATTCCAGGGCTTCTTTATGTGCACTATGCTATCTGTTTAGAACACTGTGGCTGTGTTTGGAAGATAATTCCCTATCTTGTTCTTATCTTGTGCACAAATACATCTTGACATCCAGAAAATGTCCTTAACCTTTTCAGATGGAATGCATAAAATTGTGTCATAACAGTGCCTTGGTAATTGTATTGTATCAGCAGATGTGCCTATTAGGAAACGATCCATGTCATCAGTTTGTCCCACACTGTGATTGCTCATGGACTACTGGAAACAAATGCCCTATGGAAATGGTAGTTTCATGTCTGTCTATACAAAGAATGGCACAACTTTTGAGAATGTGTTTTTATAGTACTACTATGTAGAGGACATGCTGAAGCCAAGGAATAATTAAATACCTTTATGTTGACTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1706148 lncRNA upstream 264772 78936347 ~ 78936629 (+) True G1492371
TU1706146 lncRNA upstream 265925 78935135 ~ 78935476 (+) True G1492369
TU1706065 lncRNA upstream 371815 78794009 ~ 78829586 (+) True LOC110494637
TU1706089 lncRNA upstream 390434 78779964 ~ 78810967 (+) True G1492314
TU1707047 lncRNA downstream 29423 79245955 ~ 79293250 (+) True G1493174
TU1707063 lncRNA downstream 73764 79290296 ~ 79291967 (+) True G1493185
TU1707064 lncRNA downstream 82013 79298545 ~ 79306714 (+) False LOC110494644
TU1707055 lncRNA downstream 97059 79313591 ~ 79314838 (+) False LOC110494644
TU1707054 lncRNA downstream 97257 79313789 ~ 79314838 (+) True LOC110494644
XM_021569878.2 mRNA upstream 1444 78953088 ~ 79199957 (+) False LOC110494640
XR_005036681.1 mRNA upstream 1444 78953088 ~ 79199957 (+) False LOC110494640
XM_021569879.2 mRNA upstream 1444 79149620 ~ 79199957 (+) True LOC110494640
XM_036948230.1 mRNA upstream 4069 78953088 ~ 79197332 (+) False LOC110494640
XR_002469301.2 mRNA upstream 6903 78953088 ~ 79194498 (+) False LOC110494640
XM_021569886.2 mRNA downstream 4748 79221280 ~ 79273445 (+) True LOC110494642
LOC110493266 mRNA downstream 60769 79277301 ~ 79288650 (+) True LOC110493266
XM_021569888.2 mRNA downstream 81988 79298520 ~ 79314874 (+) False LOC110494644
XM_021569889.2 mRNA downstream 81988 79298520 ~ 79314874 (+) False LOC110494644
XM_036948258.1 mRNA downstream 104561 79321093 ~ 79336076 (+) False LOC110493267
TU1706085 other upstream 425674 78773229 ~ 78775727 (+) True G1492310
TU1706084 other upstream 427642 78770747 ~ 78773759 (+) False G1492310
TU1705741 other upstream 948093 78252629 ~ 78253308 (+) True G1492003
TU1705667 other upstream 1011111 78189012 ~ 78190290 (+) False G1491963
TU1707053 other downstream 113087 79329619 ~ 79336072 (+) True LOC110493267
TU1707042 other downstream 166113 79382645 ~ 79385437 (+) False tusc2
TU1707040 other downstream 167263 79383795 ~ 79385437 (+) False tusc2
TU1707041 other downstream 167263 79383795 ~ 79385437 (+) True tusc2
TU1709446 other downstream 2076908 81293440 ~ 81293926 (+) True G1495346

Expression Profile