RNA id: XM_021569899.2


Basic Information

Item Value
RNA id XM_021569899.2
length 2760
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110494645
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79315200 ~ 79321011 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgccctgactaatttaggctgttctgagggcaaatggggtgcgcaacttaatattaggaagTGTTTGTGATGTCAACATGGAGAGAGATGACAATCAagaaaagggagagatggaggagataaAGAGTGAGAATCCATCCTCTGACTGCACACTGTCAACTGTTCCTGAGCCTGCTGGGCCAGTGGGAGGAGACGAAGGCACCAATGTGACTTTAGAGGAGCCTAAGAATCCACCTCCATCAGATACTATGGGTGAGGAGGGGACCCAGGAACTAGAACCAGCCCCTGATCAGGAACTAGAACCGGCCCCTGTCCAGGAACTAGAACCAGCCCCTGACCAGGAACTAGAACCGGCTCCTGACCAGGTAAAAGATGAAGAGACCAATGAGTGCAATAAGACAGAATATCATAACAGTTCAGGTGGTCAACCAGAGACTGTGCCAGAAGAGGCTTCATCTTCAGCTGAGAATGTGCAGGACGACTCAGGGGAGTTTGTGGTCACTATGTTGGCCAGAGGTAAACTGGAGGAACAAGATATGGGAGTGAAGGGGATGTCCTCTACACTTTCAGAGACTGGCGCCCCAGAGGCCCACCCATCCTACCGTGATGAAGACGTGATGGCTGAGAGCTGGAGGCAGCACAGGAAGCATGTGTTTGTCCTGAGTGAGGCAGGGAAACCAATCTACTCCCGCTACGGCAGTGAAGAGGCCCTGTCGTCCACCATGGGAGTCATGATGGCACTGGTGTCCTTTGTCCAGAGTAGTGACAACATGATCCGCTCTGTCTACTCAGACGGGCACACGGTGGTGTTCATGCAGAAGGGTCCTCTGGTGCTGGTGTCTGTGTCAAGCAGCCGTCAGTCAGAGCAGCAGCTGCGTGCTGAGCTGCTGTACGTCTACTACCAGATCATCAGCATGCTCACCCAGGCCAGCATCACACGCATCTTCGAACACAAGAAGAACTATGACCTGCGGCGACTACTGGCCGGCTCCGAGAAGATCCTGGATGGCCTCCTCAACCTGGTGGACTCAGACCCCAGCTTCCTGCTGGCAGCGGTGCACTGCTTGCCCCTGACTTCCTCTCTCAGGGACTCCCTCAGCCAGATCCTACAGAAGGCCATCACCCCAAACCTGGTCTTCTCCATCCTCATTGCCAAGAACCAGCTGCTCACCattgtccaggagaagacggTGATTGAGGACACCAGGCTGGAGCCTGCTGATGTCCACCTACTGCTCAACCTCATTGGGGCCTCCTCTGCCTTCCAGGCTGGAGAGATCTGGACTCCCATCTGCCTGCCTCTCTTTAACCCTGACTGTTACTTCTATGCCTACATCTCCTACCTGGACCCCCCAGAATGCACTGTGTGTCTGCTGCTGCTCTCCACGGATAAGGAGGCCTTTTATGCAGTGGCAGAGTGcaagaggaggatagagttggCCATGCTGGCTCAGAGCTCTCTGAGGCTCATTGCCAATGCCCACTCCTACAGCGTGAGCCAGGTGGGTGTCTCAGACCTCAGGCACTTCATGTACAAGCCCTTTGATGTCCCAGACAACCACAAGCAGCTCACCCAGTTCACCAGCCCAGAGATGGAGGCTCCCTACAGcacggaggaggagaggatgcgGCTGCTGGACCTGTACCGTTACATGCACAGTCGCATCCACAGCTCCTCCCGGCCCCTCAAGCTCATCTACCACGTGGCAGAGAGGGAAACCCTGCTGGCCTGGGTCACAAGTAAATTTGAGTTGTACACTTGCTTCAGCCCCTTGGTGACTAAGGCCCGTGCCATTAACGCAATAACCAAGCTTCTACGTTGGATCAAGAAGGAGGAGGACCGTCTCTTTATCCGATACCCACCCAAGTATTCAACCACGCCCAACCCCAGCAAAAGCTCCCGCAAGTCTGACCAGCAGGACTCCACAGATAATGGCTTTGCGTCTCTACTATAGAGCTGATCTAGCCCTGGCTCTGTCAACAGTTTATACACCGGTTCTACTAGAAGAGGTGTTAGGGACTGACCACATCCTACATCTTTTTGGACTTCATTGAACTTTTACCACTGGACTATTGAAGGATGACTTGCCTTCTTGAAACTGACTCTATTATTATTTCTGTACCTTTATAAGAAAGCATGTTTAGTAACTGTGTTAGTGCTTTTAGGTTCCAACTTAGTCAGGAAAACTGTAAGGAGAAAGCAAACATTTTAAAATTGGCTAGTGGTGGAACTTTCAATAATATCTAATTgtttttatattgttttattctatTGTGACAAAGGTGAGAACTCTTCTCGAAGGCATAATATCTGACTCATTACATACAACTATTGCAATTCAAGCTTTTGTGGTCATTGACACTGTAGCACATTACAAAAATGAAAGGAAGGCCTACCTAGAACTACTCCTAAATTTCTTTTCAACTGCCTTGCCATCATACTTATTGCTAGAAACCTTAATGTTGACCGGATGACAAATaggaaattaattttaaaaagtttGGTTATTGGTGGGATGAACAGAATTTAAATGTATCAATGTCTTATTTTGAAATCGCATCCTCTAGACAACTGGAATTGGAAGGATTACCACTCTTGTATGTGTCTGGATGACTGGATAGTCCATGTAGAGAGTCCATCACCTCTCTACATGTTCATTGTTCTCAGTTGATACAATTGTTTGACTGGCATGTTGTCTTTGTTTAGATTGTAAATAATGCTCTGGTAATAAACATTCAGTTAAATTTTTCTATCCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1707260 lncRNA downstream 413 79313924 ~ 79314787 (-) True G1493367
TU1707277 lncRNA downstream 23544 79290283 ~ 79291656 (-) True G1493382
TU1707223 lncRNA downstream 98053 79215284 ~ 79217147 (-) True G1493332
TU1707018 lncRNA downstream 114549 79200417 ~ 79200651 (-) True G1493152
TU1707017 lncRNA downstream 115283 79197747 ~ 79199917 (-) True G1493151
TU1707323 lncRNA upstream 59324 79379122 ~ 79382147 (-) True G1493415
TU1707408 lncRNA upstream 181626 79501424 ~ 79502027 (-) True G1493483
TU1707415 lncRNA upstream 197483 79517281 ~ 79517527 (-) True G1493490
TU1707417 lncRNA upstream 199575 79519373 ~ 79519585 (-) True G1493492
TU1707418 lncRNA upstream 200475 79520273 ~ 79520539 (-) True G1493493
XM_021569887.2 mRNA downstream 17472 79292446 ~ 79297728 (-) True LOC110494643
XR_005036719.1 mRNA downstream 478806 78741202 ~ 78836394 (-) False LOC110493264
XM_021569867.2 mRNA downstream 663357 78642915 ~ 78651843 (-) True LOC110494630
XM_036948232.1 mRNA downstream 807102 78484389 ~ 78508098 (-) True LOC110494625
LOC110494623 mRNA downstream 882627 78427699 ~ 78432573 (-) True LOC110494623
XM_021569901.2 mRNA upstream 3426 79323224 ~ 79327983 (-) False LOC110494647
XM_021569902.2 mRNA upstream 3426 79323224 ~ 79329499 (-) True LOC110494647
XM_021569907.2 mRNA upstream 36096 79355894 ~ 79359031 (-) False hemk1
XM_021569906.2 mRNA upstream 36096 79355894 ~ 79359054 (-) True hemk1
XM_036948435.1 mRNA upstream 524612 79844410 ~ 79845741 (-) True LOC110493269
TU1706748 other downstream 499771 78807139 ~ 78815429 (-) True G1492898
TU1706752 other downstream 501245 78803860 ~ 78813955 (-) True G1492901
TU1706762 other downstream 533805 78778352 ~ 78781395 (-) True G1492910
TU1706741 other downstream 543246 78770740 ~ 78771954 (-) True G1492897
TU1706560 other downstream 839694 78473018 ~ 78475506 (-) True G1492729
TU1707296 other upstream 28433 79348231 ~ 79349389 (-) True G1493395
TU1708035 other upstream 751841 80071639 ~ 80087637 (-) True G1494054
TU1708910 other upstream 1278196 80597994 ~ 80598532 (-) True G1494870
TU1708974 other upstream 1372624 80692422 ~ 80694102 (-) False G1494924
TU1708975 other upstream 1372624 80692422 ~ 80694102 (-) False G1494924

Expression Profile