RNA id: XM_036948259.1


Basic Information

Item Value
RNA id XM_036948259.1
length 4501
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC110493267
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79321093 ~ 79336076 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCCCCCTAAATGTAGCTAACTGTACCAAGAGCTAGCTATATGAGATACTGGTTATCTCATTATAATAGTACGGTTATTTGAATTGAAAAGTGTTTCGTGACATAACAGTAAAGCAAATATTATTGCATCTGTGACTGAACATTTCCTCCTCAATCTGTTTGACGAATGGGGTAATTTGAAACAGTCAGCGCATCACCCGTTGGCTAGCTGTTACGCGTTTAGCCcctgttcatatagctaactatAGTAAACCTCAGTGGTTTAGACAGTTACTCGGCCTTGGTCATATTAGCTAGCTGGTTTagataaaatatgttttttgacAAAGCATACATTTTGGGTGTTGTTTTATAAAATGGAAGAGCCCTGGGATTTCGAGTTTTTATCCCGCATTGTGGACGGGTTTGTTTCGTTTCTTTCCGAATTTGTTGACGACTGGCTTGCTAATGATATGAGAGTGTCAATATTCAAGATATTGTTTAGTTGGCTCGTTGTCAGTCTCATTGCCATCCATTTCGCTTGGAAATTTTACGGAAACACTGTGAACGATATGTATTACCGACAAGGTACTGGTGGAAAGAATGGAGGCACACCTGACACTGCACCTCACAGGAGCGGATGGTAGGTGTCCAAGCATCCATGTCTCCCTCCAGGGAGAGTGCGGCAGGAGACAACCTCAAGACACATCGTGAGTGACAGACAGGACATAAGTTGGACTACATACAATTTGCTCTCTTGTCTTATCAGACAGGGTTGCTGAGTAGACACAGACTTGCTAATGTTGTGCCTTTTCAAATGGACTGGAGTTCATTGATGAGGTGGGCCTGTGGAAGCTTCCTTTGAGCTGAAGAAGTTTCTCCTTGTTGGTTGTCATGACGATATAACGATATAAACACCATGTAATATGCTAAGATATTCTCTCATATGCCATATCTTTTTTAATCTCATATCTTTTTAAATTTAGCTCCTCTGGCTCATGTACAATTTTACCTCCTTTTATTGGAGAGACATTCAAATATCCATCTGGCTACATATCCACTGATTGATATAGATTTACATGAAATGTTATTCTAATCTAGACAGAATCTGGAGAGACTCAACAACAAATGCTGTGAGAGTTGTGGGTTGGTGTGACTGCAGTTatgttcgtaacatattgtatgagtAAGGAGCTGTTCAGAGAGAtggtttctgtttttatttttgctGGAGCAAGGCTACATAGTAATCCATGAAGATTGCGCTGGAGCAAGGCTACTGTGGAGAGCGTGGTCAGAGATAGAGGTCTTACATCAAACAGCAGCTTTCCTCAAATTCATATTTCTTATTATTGACAGCCTGAGCCCTCAATGACTGTCTTTTGATTGTTATGAAAATATAAAACAGTGAAGACTGGGGTGCGTTCAGTTTGATTGAACATTTGCTACATTGTTTATCTGTTTGTACTAAATGACACGTTTCCCCAAAACGTTATTGAACAGATGTTGCGGTAGGTTTGCTCTGTTTCGTGGGTCTGACAGGTTGATGCTTGAAGAAAGTGAGTGACGTATTTAAAGGTAAGCCGCCATGCTGACAGCCTTCCACAACCCAACCCCTCCCCGTTTTTAACTGGCCATTTAGAACAGTACCGTTTCCATTTGATTGAATGTTGGAGTATGTTTTTTTTGTACTGAACGCAGCCCTGTCTTCTGATTGCTGTGAAAATATTAAACAGTGAAGGCCAATAATGATTTTTATTGTCTCAGGTACAGGTTGGTACCTGTAGCAGTCCAATGGAGTAGGCACATTGATTGTACATTTTATGTTATGGTCTTGTGCAGTTGATTGGTACATAAATCATTTTGTTTAAAATTCtaatttcctaatgttttgtttttttcattgtCTAAAACGATGTCTAGCACACAACTTAGTCCAGCAGATAGGTGACATAATTCTTCCATTTTATGATACAAGTATCAAACTTGGTACACTAATACTAGATACTTTAAGGAACAGTTTAATATTTTTTTGCAGCCTGGGAAGCTTGTCAGTCAACCATGGTGGCTATTTTTAATAACATGTTAATGTTAATAAACCTGTTAGAAGAAAATAGAGTAAAATCATTCCAAACAATATCAAAATAACTCATTTATCTACCCACTATATTACCCCAGATATAGACAAATCTGATCATAAAGTACTCTTAAGACCTTAATAGGGGTCATATTGAGGTCACTTTGACCATAGTCCAGCAGCTTTGTGAGAAAATGATAGAGCCACCAAATTTCACACATTGCTACGGCATGTCTAAATAACTATTTTTGTAGTGCCATCGCAGATTTGGTCAATTACACCACCCTGGCGTCATTTCCAATATGGCCACTGAAAAATAGGCTAAGAAATCCAAGATAGGGAATTAGTTGGATAGATGTCACCAGGGGTATAATTCAATTCATTTAGACAAGAAGTTTCTGATTTTTTTCAATGTTACGAAGATGAAAATAGGCTGCTCTTGAAATATTTTTGACACGTTCATCGAAGGCaatatcagggtccagagtaacgccaaggtccttcagtTTTTATTTgcgatgactgtacaaccatctaGATTTACTCTGCTCTGGTCAGAGAGCAAGGAGACAGAGCCAAAGTTCACATATTTATTATGGACTTGTGGTTGGACATGGTAAAGTTGGATTTGTGTGTGGTTCTGAAACAAAGGAGAGACATAAGCAAGTTGCATAATGTAAAAAGGTGATAAGGATGATTATATTAAACAAGGAAAAGTATTACGTAACTAAAATATACAAGGAAATaggaaatgtacttttaacacaACTGGAAAGAAACTTGAGTAACTGCTTGACAGGCTCATTCACACCTTGAGTTTCTATTTAAATCCTATCAGGGCAGTCCTGATAATTAGTGACAAGTGTGTGGCATTGAGAAAGAGTCAACAGGTGAAAATCAACTTGGTTGATTAAAGTCATCTCTGTAGTATTAGAGAGGAACATCCAAAGTGAGAGGGATAACTGGacccaaaatctgtcttctccagcagACCCTCTCAAACATTTGAAACCATCATTGGGCTGGCACGGCGTACAGAGTTAAGCTCCTGAATGGTGGCACCAGCACCAGCCAGTCTACGTGTAACATCCTGTTTGTCTTGAAGAGAGATTGGTGGGACTGGTGCAGGCAAGAGTGCAGACcctcctcctacacacacacacaagACCCAAGCGGACCCTCTACAGTAAGAAGTATGGAGTGGATCTGATCAGGTACACACATGCAGCCAACACCGTGGTCTACAGCTTCAACAAAATTGATGACACTATCCGGTACCTCTCCCTCCATGACAACAAGTACATTCGGTACTTCCCCGGACACAACAAAAGGGCCTGATGCACCTCCAGGGGAAGCCAGTTTGCTCCTTTGACCCTGGGGGTCTGATTGTTGCTGCTGGTGTGAACTCTGAGATGGTCAAATTGTACGACCTGCGATCCTTTGACAAGGGTCCTTTTGCTACCTTCAAGCTACAGTACGACCGTACATGTGAGTGGACAGGACTCAAGTTCAGCAATGATGGGAAGCTCATCCTTGTCTCAACCAATGGGGGTGCTCTCCGCCTCCTCGATGCCTTCAAGGGCGCTGTGATGCATTCCTTTGGGGGCTACAACAACAGTAAAGCTGTGACGCTGGAGGCCTCCTTCACTCCTGACTCTGTTTATTATGATTGTTAAGTCCACAAGGAACGTGAGGCTCTGAGGATGGGAAGATCCACATGTGGAATGCAGAGAGTGGGATGAAGGTGGCTGGTCTGGATGGGAAGATCCACATGTGGAATGCAGAGAGTGGGATGAAGGTGGCTGGTCTGGATGAGAAGATCCACATGTGGAATGCAGAGAGTGGGATGAAGGTGGCTGGTCTGGATGGGAAGATCCACATGTGGAATGCAGAGAGTGGGATGAAGGTGGCTGGTCTGGATGGGAAGATCCACATGTGGAATGCAGAGAGTGGGATGAAGGTGGCTGGTCTGGATGAGAAGATCCACATGTGGAATGCAGAGAGTGGGATGAAGGTGGCTGGTCTGGATGAGAAGATCCACATGTGGAATGCAGAGAGTGGGATGAAGGTGGCAGGTCCCATCACCTGCCTTCAGTTCAACCCCAAATTCATGACTTTTTCTAGTGCCTGTTCAAACATGGTTATGTTGAAAACACACAATCTCACATACAGAATGCTCAGTAAATCTGTTTTGTCCTCTGCAGGCATTCTGGCTCCCCACTATTGATGATTGATTGAGAGAGCGAGATGCTATAGAAGCCACAGGCAACGTGAGATCCCATTTAAAACCAGCAGGCGTCAGCACATCcagctctttgtgtgtgtgtgtgtgtgtgttgccaatTCAAGTTGATTGTAAATATGTAGAACTTCAGGAATATAAATGGTCAGATTGTTGTGTTCTTTTTATACTTGTaacattaaatgttttattttttaacaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1707055 lncRNA upstream 6255 79313591 ~ 79314838 (+) False LOC110494644
TU1707054 lncRNA upstream 6255 79313789 ~ 79314838 (+) True LOC110494644
TU1707064 lncRNA upstream 14379 79298545 ~ 79306714 (+) False LOC110494644
TU1707047 lncRNA upstream 27843 79245955 ~ 79293250 (+) True G1493174
TU1707071 lncRNA downstream 2558 79338634 ~ 79343426 (+) True LOC118936427
TU1707073 lncRNA downstream 3622 79339698 ~ 79444677 (+) True G1493195
TU1707193 lncRNA downstream 169312 79505388 ~ 79505593 (+) True G1493309
TU1707202 lncRNA downstream 180706 79516782 ~ 79517163 (+) True G1493318
TU1707413 lncRNA downstream 181221 79517297 ~ 79517805 (+) True G1493488
XM_021569888.2 mRNA upstream 6219 79298520 ~ 79314874 (+) False LOC110494644
XM_021569889.2 mRNA upstream 6219 79298520 ~ 79314874 (+) False LOC110494644
LOC110493266 mRNA upstream 32443 79277301 ~ 79288650 (+) True LOC110493266
XM_021569886.2 mRNA upstream 47648 79221280 ~ 79273445 (+) True LOC110494642
XM_036948257.1 mRNA upstream 104561 79201869 ~ 79216532 (+) True LOC110494641
XM_036948434.1 mRNA downstream 6989 79343065 ~ 79350582 (+) False LOC118936427
XM_036948255.1 mRNA downstream 15696 79351772 ~ 79355461 (+) False LOC110494652
XM_036948256.1 mRNA downstream 15706 79351782 ~ 79355461 (+) False LOC110494652
XM_021569908.2 mRNA downstream 15706 79351782 ~ 79355509 (+) True LOC110494652
XM_021569905.2 mRNA downstream 23202 79359278 ~ 79366137 (+) True nprl2
TU1706085 other upstream 545366 78773229 ~ 78775727 (+) True G1492310
TU1706084 other upstream 547334 78770747 ~ 78773759 (+) False G1492310
TU1705741 other upstream 1067785 78252629 ~ 78253308 (+) True G1492003
TU1705667 other upstream 1130803 78189012 ~ 78190290 (+) False G1491963
TU1707042 other downstream 46569 79382645 ~ 79385437 (+) False tusc2
TU1707040 other downstream 47719 79383795 ~ 79385437 (+) False tusc2
TU1707041 other downstream 47719 79383795 ~ 79385437 (+) True tusc2
TU1709446 other downstream 1957364 81293440 ~ 81293926 (+) True G1495346
TU1709462 other downstream 2000941 81337017 ~ 81338163 (+) True G1495362

Expression Profile