RNA id: XM_021569908.2


Basic Information

Item Value
RNA id XM_021569908.2
length 2445
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110494652
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 79351772 ~ 79355509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacatttgatttgattttgacattTGTTTATAAgcaggggtgaaagtaaggcgGTATGGTCCAGGCAGAATAAAGTGTGGTACGCCATACCAGTTAAAAGTAAGTCTATCACAATTAAAACAACAAGCCCAAAAAACTACAGGCTATTATACCATTATTTGACATTACTGCATATCAGCCGCATGAATAATTAGCGAATTGACTGGAAATCGGTTGGTATACGCTCCAAATTGAGTTGTGGTTTGAGGAGAACACTAACATGTTGCCAAGGCAGAGATGCGTGGCCGAAACGCCCGCGGACAAGACGGAGCTGAGTGGCCGAGACCGTGGCGCGCGTGGACATCCGTGGATGCATCAATTCAGCTACAAGTGTAGGCCTAATGACTTTGTCAATGGGTCAGTGTCGCTTAAGTTTTTTTCCAACAATAATTTCGTCCTCCAGATTAGATGGAGGTCATATTGTATTTCTGTCTCCCCTTTTCGTAGGCTAATTATATATGGACCAGACatcgtttttattgatctgtttgtcagtgtcagcagagtaggctCCCATGTATATTTTATCATATAAAAAAAGAGTGCGCGCACTTGGATATCCCGTACCCGTAAGAAATTAAATCTACTTTCACCCTCTGTTAATACGTATTTTCAGCTGACGAATGTCTATATTATTTGGAAAAACCCTATTCGTTCCGCATACCCATTATTCTAGTGACTCAATTCCCAGAATGTGTAAAGGGCTGGCTGCAGGTCTAGTGGGCGGAGATAATCGCACCGATTCTTGGAAAGTGATTAGGGGGAAGGTAGTGTTGAGGTCCGATTCCTGGCAGCAAGACCGAAAGACTGAATTACTATGATGAATTTAGACTCACCAGGAACGAGctaaatttgtatttatttttacactGGCATTCACAGTAACAGATTTCAAATAATAAAATGTGGACAGGCTCGGTGGCGGTGCGCATGACGTCAGAAGCTCCGGTGTACTGAACAGTTCTCAGAATAGAATCACAGAGTATAATTCTTGGAATTGGTTCATTTTAAAAGCCGAacccacacaccctccctcacatACTAAGAACCCATTTTAGAGACAACACTCATCTGCTGCTCTGTATCCTATATTTCTAcatttcacatttattttagtGCTTTTGAATGAGTTTATTCATTTTCGGATGCGTCTCTATTCACTGAACATTTGCGTGAGACATTAATTAGAATAAAATAATTACATTCCTTTGTATAGACCAGCTATATTTTCGTAAAAACCGCTGTGGAATTAGACTATtgtggaatattgaagactcaccGTCATGATTCTTTGTGTTCAAGGCCCCAGACCACTGCTGTCTGGCAGCCCCACAGAGGGCCCTGTGGGCATGCGGACAGGGAGCATCTCCTCACCTCACTGCCTTCACAGCACCCCTCCACAGTGGGACCCCACGAATGATCTGCGCACCATCGCCAAAAACTTCTTCTACCTTGATACCTCAGGCTGGTACTGGGGAGCCATCACAGCAAGTCAGGCCCATGCAGCTCTCCAGGCAGCGTCAGAGGGGGCCTTTCTGATTCGAGACAGCAGCCATCCCCTGTACATGCTGACCCTGTCTGTTAGGACTGCCCGTGGCCCCACCAGTATACGCATCCAGTACAGTGGAGCCCGGTTTCTGCTTGACTCCAGCTCGCCAGCCCGACCCAGCCTTTTGTCCTTTCCTGATGTGCCTAGCATGGTGCAGTACTATGTAGGACCAACAAGGAAGGTACAGAAGGGCAAGGTGGAGGAGACTCATGGCACACAGCCCGCCCAGAGGACAGTTCAGGAGAGCACAGTAGTGCTGAAGCTCAAGCGGGCCCTGCACAAGCCCCaggccttcccctccctccagcACCTCACACGCCTCACCATCAACCGCAGCACAGGCTGTCCGGACCAGCTGCCACTGCCACGCCCACTGGTGCGCTACCTGCAGGACTACCCCTTCCATGTATGAGGGTCCTCAAGTGCTGAATTAAACAAAACAGCTCAACTAAACCTTGAGGAGCGCTGTCAGTAAGAGGTCCCTGGCAGCTGGAAACAACATCACTGCACTGGAAACTAATGGAGCCACATCAGACATACGGTTGGTCATGAGACCATGTTTGGgaaagaaccttccagaaaatGGTGCCTGGTTTTGGATTTCTCAGAGGGAAGTGGGGTTCTGTGTACCACCCCAATTCACAGAGGTGATTGACTGGAAAACACATGGTGCTAACTGTAGTGTATCCTCGTGCTATGAGGGGTAACATTTTCTTTCTGTTTCTGAGCAGTGAATTGCTTTTCAGTCACAGATGTAAATTGTTTAATTTTTTGTTTAGTCAACATTGTCATTTTTTACCGCCCCGACACTGTAAAGGGACACTGTCCcttttttttattaaaacaatATTAAATTA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K04701 CISH; cytokine inducible SH2-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1707071 lncRNA upstream 8356 79338634 ~ 79343426 (+) True LOC118936427
TU1707037 lncRNA upstream 28572 79321262 ~ 79323210 (+) False LOC110493267
TU1707038 lncRNA upstream 28572 79321262 ~ 79323210 (+) False LOC110493267
TU1707055 lncRNA upstream 36944 79313591 ~ 79314838 (+) False LOC110494644
TU1707193 lncRNA downstream 149879 79505388 ~ 79505593 (+) True G1493309
TU1707202 lncRNA downstream 161273 79516782 ~ 79517163 (+) True G1493318
TU1707413 lncRNA downstream 161788 79517297 ~ 79517805 (+) True G1493488
TU1707423 lncRNA downstream 167515 79523024 ~ 79523296 (+) True G1493498
TU1707437 lncRNA downstream 188937 79544446 ~ 79544948 (+) True G1493511
XM_036948434.1 mRNA upstream 1200 79343065 ~ 79350582 (+) False LOC118936427
XM_036948258.1 mRNA upstream 15706 79321093 ~ 79336076 (+) False LOC110493267
XM_036948259.1 mRNA upstream 15706 79321093 ~ 79336076 (+) False LOC110493267
XM_021569888.2 mRNA upstream 36908 79298520 ~ 79314874 (+) False LOC110494644
XM_021569905.2 mRNA downstream 3769 79359278 ~ 79366137 (+) True nprl2
XM_021569911.2 mRNA downstream 15310 79370819 ~ 79382289 (+) False LOC110494653
XM_036948252.1 mRNA downstream 17787 79373296 ~ 79382289 (+) False LOC110494653
XM_021569910.2 mRNA downstream 17788 79373297 ~ 79382289 (+) False LOC110494653
XM_021569913.2 mRNA downstream 21043 79376552 ~ 79382289 (+) True LOC110494653
TU1707053 other upstream 15710 79329619 ~ 79336072 (+) True LOC110493267
TU1706085 other upstream 576055 78773229 ~ 78775727 (+) True G1492310
TU1706084 other upstream 578023 78770747 ~ 78773759 (+) False G1492310
TU1705741 other upstream 1098474 78252629 ~ 78253308 (+) True G1492003
TU1705669 other upstream 1161492 78189012 ~ 78190290 (+) False G1491963
TU1707042 other downstream 27136 79382645 ~ 79385437 (+) False tusc2
TU1707040 other downstream 28286 79383795 ~ 79385437 (+) False tusc2
TU1707041 other downstream 28286 79383795 ~ 79385437 (+) True tusc2
TU1709446 other downstream 1937931 81293440 ~ 81293926 (+) True G1495346
TU1709462 other downstream 1981508 81337017 ~ 81338163 (+) True G1495362

Expression Profile